NP-MRD: Showing NP-Card for (2s)-3-[(2r,4e)-4-{[(1s,2r,4ar,6r,8s,8ar)-2-[(2e)-but-2-en-2-yl]-6,8-dimethyl-decahydronaphthalen-1-yl](hydroxy)methylidene}-5-hydroxy-3-oxo-2h-pyrrol-2-yl]-2-hydroxy-2-methylpropanoic acid (NP0210672)

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Record Information

Version

2.0

Created at

2022-09-05 08:35:49 UTC

Updated at

2022-09-05 08:35:49 UTC

NP-MRD ID

NP0210672

Secondary Accession Numbers

None

Natural Product Identification

Common Name

(2s)-3-[(2r,4e)-4-{[(1s,2r,4ar,6r,8s,8ar)-2-[(2e)-but-2-en-2-yl]-6,8-dimethyl-decahydronaphthalen-1-yl](hydroxy)methylidene}-5-hydroxy-3-oxo-2h-pyrrol-2-yl]-2-hydroxy-2-methylpropanoic acid

Description

(2S)-3-[(2R,4E)-4-{[(1S,2R,4aR,6R,8S,8aR)-2-[(2E)-but-2-en-2-yl]-6,8-dimethyl-decahydronaphthalen-1-yl](hydroxy)methylidene}-5-hydroxy-3-oxo-3,4-dihydro-2H-pyrrol-2-yl]-2-hydroxy-2-methylpropanoic acid belongs to the class of organic compounds known as sesquiterpenoids. These are terpenes with three consecutive isoprene units. Based on a literature review very few articles have been published on (2S)-3-[(2R,4E)-4-{[(1S,2R,4aR,6R,8S,8aR)-2-[(2E)-but-2-en-2-yl]-6,8-dimethyl-decahydronaphthalen-1-yl](hydroxy)methylidene}-5-hydroxy-3-oxo-3,4-dihydro-2H-pyrrol-2-yl]-2-hydroxy-2-methylpropanoic acid.

Structure

MOL 3D MOL SDF PDB SMILES InChI


  Mrv1652309052210352D          

 32 34  0  0  1  0            999 V2000
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   -0.7145   -1.2375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
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M  END

     RDKit          3D

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M  END


  Mrv1652309052210352D          

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M  END
> <DATABASE_ID>
NP0210672

> <DATABASE_NAME>
NP-MRD

> <SMILES>
C\C=C(/C)[C@@H]1CC[C@@H]2C[C@H](C)C[C@H](C)[C@H]2[C@@H]1\C(O)=C1\C(O)=N[C@H](C[C@](C)(O)C(O)=O)C1=O

> <INCHI_IDENTIFIER>
InChI=1S/C25H37NO6/c1-6-13(3)16-8-7-15-10-12(2)9-14(4)18(15)19(16)22(28)20-21(27)17(26-23(20)29)11-25(5,32)24(30)31/h6,12,14-19,28,32H,7-11H2,1-5H3,(H,26,29)(H,30,31)/b13-6+,22-20-/t12-,14+,15-,16+,17-,18-,19-,25+/m1/s1

> <INCHI_KEY>
MUDQVVPCPYQCHC-UPZXKQCMSA-N

> <FORMULA>
C25H37NO6

> <MOLECULAR_WEIGHT>
447.572

> <EXACT_MASS>
447.262087915

> <JCHEM_ACCEPTOR_COUNT>
7

> <JCHEM_ATOM_COUNT>
69

> <JCHEM_AVERAGE_POLARIZABILITY>
48.53787953798525

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
4

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
1

> <JCHEM_IUPAC>
(2S)-3-[(2R,4E)-4-{[(1S,2R,4aR,6R,8S,8aR)-2-[(2E)-but-2-en-2-yl]-6,8-dimethyl-decahydronaphthalen-1-yl](hydroxy)methylidene}-5-hydroxy-3-oxo-3,4-dihydro-2H-pyrrol-2-yl]-2-hydroxy-2-methylpropanoic acid

> <JCHEM_LOGP>
3.962488075333331

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
3

> <JCHEM_PHYSIOLOGICAL_CHARGE>
-2

> <JCHEM_PKA>
4.332364501425133

> <JCHEM_PKA_STRONGEST_ACIDIC>
3.283105390345927

> <JCHEM_PKA_STRONGEST_BASIC>
1.0929146261836766

> <JCHEM_POLAR_SURFACE_AREA>
127.42

> <JCHEM_REFRACTIVITY>
122.58109999999995

> <JCHEM_ROTATABLE_BOND_COUNT>
5

> <JCHEM_RULE_OF_FIVE>
1

> <JCHEM_TRADITIONAL_IUPAC>
(2S)-3-[(2R,4E)-4-{[(1S,2R,4aR,6R,8S,8aR)-2-[(2E)-but-2-en-2-yl]-6,8-dimethyl-decahydronaphthalen-1-yl](hydroxy)methylidene}-5-hydroxy-3-oxo-2H-pyrrol-2-yl]-2-hydroxy-2-methylpropanoic acid

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 05-SEP-22   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   05-SEP-22         0                                  
HETATM    1  C   UNK     0      -2.667  -3.080   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0      -1.334  -2.310   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0       0.210  -3.024   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0      -0.113  -4.199   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0       1.334  -2.310   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0       1.334  -0.770   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0       2.667   0.000   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0       4.001  -0.770   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0       5.335   0.000   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0       6.668  -0.770   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0       8.002  -0.000   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0       6.668  -2.310   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0       5.335  -3.080   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0       5.335  -4.620   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0       4.001  -2.310   0.000  0.00  0.00           C+0
HETATM   16  C   UNK     0       2.667  -3.080   0.000  0.00  0.00           C+0
HETATM   17  C   UNK     0       2.667  -4.620   0.000  0.00  0.00           C+0
HETATM   18  O   UNK     0       4.001  -5.390   0.000  0.00  0.00           O+0
HETATM   19  C   UNK     0       1.334  -5.390   0.000  0.00  0.00           C+0
HETATM   20  C   UNK     0      -0.073  -4.764   0.000  0.00  0.00           C+0
HETATM   21  O   UNK     0      -0.393  -3.257   0.000  0.00  0.00           O+0
HETATM   22  C   UNK     0      -1.104  -5.908   0.000  0.00  0.00           C+0
HETATM   23  C   UNK     0      -2.635  -5.747   0.000  0.00  0.00           C+0
HETATM   24  C   UNK     0      -3.540  -6.993   0.000  0.00  0.00           C+0
HETATM   25  C   UNK     0      -2.295  -7.898   0.000  0.00  0.00           C+0
HETATM   26  O   UNK     0      -4.786  -6.088   0.000  0.00  0.00           O+0
HETATM   27  C   UNK     0      -4.446  -8.239   0.000  0.00  0.00           C+0
HETATM   28  O   UNK     0      -5.977  -8.078   0.000  0.00  0.00           O+0
HETATM   29  O   UNK     0      -3.819  -9.646   0.000  0.00  0.00           O+0
HETATM   30  N   UNK     0      -0.334  -7.242   0.000  0.00  0.00           N+0
HETATM   31  C   UNK     0       1.173  -6.922   0.000  0.00  0.00           C+0
HETATM   32  O   UNK     0       2.317  -7.952   0.000  0.00  0.00           O+0
CONECT    1    2                                                            
CONECT    2    1    3                                                       
CONECT    3    2    4    5                                                  
CONECT    4    3                                                            
CONECT    5    3    6   16                                                  
CONECT    6    5    7                                                       
CONECT    7    6    8                                                       
CONECT    8    7    9   15                                                  
CONECT    9    8   10                                                       
CONECT   10    9   11   12                                                  
CONECT   11   10                                                            
CONECT   12   10   13                                                       
CONECT   13   12   14   15                                                  
CONECT   14   13                                                            
CONECT   15   13    8   16                                                  
CONECT   16   15    5   17                                                  
CONECT   17   16   18   19                                                  
CONECT   18   17                                                            
CONECT   19   17   20   31                                                  
CONECT   20   19   21   22                                                  
CONECT   21   20                                                            
CONECT   22   20   23   30                                                  
CONECT   23   22   24                                                       
CONECT   24   23   25   26   27                                             
CONECT   25   24                                                            
CONECT   26   24                                                            
CONECT   27   24   28   29                                                  
CONECT   28   27                                                            
CONECT   29   27                                                            
CONECT   30   22   31                                                       
CONECT   31   30   19   32                                                  
CONECT   32   31                                                            
MASTER        0    0    0    0    0    0    0    0   32    0   68    0
END

View in JSmol

Synonyms

Value	Source
(2S)-3-[(2R,4E)-4-{[(1S,2R,4ar,6R,8S,8ar)-2-[(2E)-but-2-en-2-yl]-6,8-dimethyl-decahydronaphthalen-1-yl](hydroxy)methylidene}-5-hydroxy-3-oxo-3,4-dihydro-2H-pyrrol-2-yl]-2-hydroxy-2-methylpropanoate	Generator

Chemical Formula

C₂₅H₃₇NO₆

Average Mass

447.5720 Da

Monoisotopic Mass

447.26209 Da

IUPAC Name

Traditional Name

(2S)-3-[(2R,4E)-4-{[(1S,2R,4aR,6R,8S,8aR)-2-[(2E)-but-2-en-2-yl]-6,8-dimethyl-decahydronaphthalen-1-yl](hydroxy)methylidene}-5-hydroxy-3-oxo-2H-pyrrol-2-yl]-2-hydroxy-2-methylpropanoic acid

CAS Registry Number

Not Available

SMILES

C\C=C(/C)[C@@H]1CC[C@@H]2C[C@H](C)C[C@H](C)[C@H]2[C@@H]1\C(O)=C1\C(O)=N[C@H](C[C@](C)(O)C(O)=O)C1=O

InChI Identifier

InChI=1S/C25H37NO6/c1-6-13(3)16-8-7-15-10-12(2)9-14(4)18(15)19(16)22(28)20-21(27)17(26-23(20)29)11-25(5,32)24(30)31/h6,12,14-19,28,32H,7-11H2,1-5H3,(H,26,29)(H,30,31)/b13-6+,22-20-/t12-,14+,15-,16+,17-,18-,19-,25+/m1/s1

InChI Key

MUDQVVPCPYQCHC-UPZXKQCMSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Not Available

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as sesquiterpenoids. These are terpenes with three consecutive isoprene units.

Kingdom

Organic compounds

Super Class

Lipids and lipid-like molecules

Class

Prenol lipids

Sub Class

Sesquiterpenoids

Direct Parent

Sesquiterpenoids

Alternative Parents

Substituents

Sesquiterpenoid
Alpha-hydroxy acid
Hydroxy acid
Pyrrolidone
2-pyrrolidone
3-pyrrolidone
Pyrrolidine
Vinylogous acid
Tertiary alcohol
Carboxamide group
Ketone
Lactam
Secondary carboxylic acid amide
Cyclic ketone
Monocarboxylic acid or derivatives
Enol
Carboxylic acid
Carboxylic acid derivative
Azacycle
Organoheterocyclic compound
Organic oxide
Organooxygen compound
Organonitrogen compound
Organic nitrogen compound
Organic oxygen compound
Hydrocarbon derivative
Carbonyl group
Alcohol
Aliphatic heteropolycyclic compound

Molecular Framework

Aliphatic heteropolycyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	3.96	ChemAxon
pKa (Strongest Acidic)	3.28	ChemAxon
pKa (Strongest Basic)	1.09	ChemAxon
Physiological Charge	-2	ChemAxon
Hydrogen Acceptor Count	7	ChemAxon
Hydrogen Donor Count	4	ChemAxon
Polar Surface Area	127.42 Å²	ChemAxon
Rotatable Bond Count	5	ChemAxon
Refractivity	122.58 m³·mol⁻¹	ChemAxon
Polarizability	48.54 Å³	ChemAxon
Number of Rings	3	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	Yes	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

24705799

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

77281925

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

LOTUS database [Link]

Showing NP-Card for (2s)-3-[(2r,4e)-4-{[(1s,2r,4ar,6r,8s,8ar)-2-[(2e)-but-2-en-2-yl]-6,8-dimethyl-decahydronaphthalen-1-yl](hydroxy)methylidene}-5-hydroxy-3-oxo-2h-pyrrol-2-yl]-2-hydroxy-2-methylpropanoic acid (NP0210672)

MOL for NP0210672 ((2s)-3-[(2r,4e)-4-{[(1s,2r,4ar,6r,8s,8ar)-2-[(2e)-but-2-en-2-yl]-6,8-dimethyl-decahydronaphthalen-1-yl](hydroxy)methylidene}-5-hydroxy-3-oxo-2h-pyrrol-2-yl]-2-hydroxy-2-methylpropanoic acid)

3D MOL for NP0210672 ((2s)-3-[(2r,4e)-4-{[(1s,2r,4ar,6r,8s,8ar)-2-[(2e)-but-2-en-2-yl]-6,8-dimethyl-decahydronaphthalen-1-yl](hydroxy)methylidene}-5-hydroxy-3-oxo-2h-pyrrol-2-yl]-2-hydroxy-2-methylpropanoic acid)

3D SDF for NP0210672 ((2s)-3-[(2r,4e)-4-{[(1s,2r,4ar,6r,8s,8ar)-2-[(2e)-but-2-en-2-yl]-6,8-dimethyl-decahydronaphthalen-1-yl](hydroxy)methylidene}-5-hydroxy-3-oxo-2h-pyrrol-2-yl]-2-hydroxy-2-methylpropanoic acid)

3D-SDF for NP0210672 ((2s)-3-[(2r,4e)-4-{[(1s,2r,4ar,6r,8s,8ar)-2-[(2e)-but-2-en-2-yl]-6,8-dimethyl-decahydronaphthalen-1-yl](hydroxy)methylidene}-5-hydroxy-3-oxo-2h-pyrrol-2-yl]-2-hydroxy-2-methylpropanoic acid)

PDB for NP0210672 ((2s)-3-[(2r,4e)-4-{[(1s,2r,4ar,6r,8s,8ar)-2-[(2e)-but-2-en-2-yl]-6,8-dimethyl-decahydronaphthalen-1-yl](hydroxy)methylidene}-5-hydroxy-3-oxo-2h-pyrrol-2-yl]-2-hydroxy-2-methylpropanoic acid)

3D PDB for NP0210672 ((2s)-3-[(2r,4e)-4-{[(1s,2r,4ar,6r,8s,8ar)-2-[(2e)-but-2-en-2-yl]-6,8-dimethyl-decahydronaphthalen-1-yl](hydroxy)methylidene}-5-hydroxy-3-oxo-2h-pyrrol-2-yl]-2-hydroxy-2-methylpropanoic acid)

SMILES for NP0210672 ((2s)-3-[(2r,4e)-4-{[(1s,2r,4ar,6r,8s,8ar)-2-[(2e)-but-2-en-2-yl]-6,8-dimethyl-decahydronaphthalen-1-yl](hydroxy)methylidene}-5-hydroxy-3-oxo-2h-pyrrol-2-yl]-2-hydroxy-2-methylpropanoic acid)

INCHI for NP0210672 ((2s)-3-[(2r,4e)-4-{[(1s,2r,4ar,6r,8s,8ar)-2-[(2e)-but-2-en-2-yl]-6,8-dimethyl-decahydronaphthalen-1-yl](hydroxy)methylidene}-5-hydroxy-3-oxo-2h-pyrrol-2-yl]-2-hydroxy-2-methylpropanoic acid)

Structure for NP0210672 ((2s)-3-[(2r,4e)-4-{[(1s,2r,4ar,6r,8s,8ar)-2-[(2e)-but-2-en-2-yl]-6,8-dimethyl-decahydronaphthalen-1-yl](hydroxy)methylidene}-5-hydroxy-3-oxo-2h-pyrrol-2-yl]-2-hydroxy-2-methylpropanoic acid)

3D Structure for NP0210672 ((2s)-3-[(2r,4e)-4-{[(1s,2r,4ar,6r,8s,8ar)-2-[(2e)-but-2-en-2-yl]-6,8-dimethyl-decahydronaphthalen-1-yl](hydroxy)methylidene}-5-hydroxy-3-oxo-2h-pyrrol-2-yl]-2-hydroxy-2-methylpropanoic acid)