NP-MRD: Showing NP-Card for n-[5,8,11,14-tetrahydroxy-9,12-bis(hydroxymethyl)-6-isopropyl-16-methyl-2-oxo-3-(sec-butyl)-1-oxa-4,7,10,13-tetraazacyclohexadeca-4,7,10,13-tetraen-15-yl]dodec-5-enimidic acid (NP0209760)

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Record Information

Version

2.0

Created at

2022-09-05 07:18:11 UTC

Updated at

2022-09-05 07:18:12 UTC

NP-MRD ID

NP0209760

Secondary Accession Numbers

None

Natural Product Identification

Common Name

n-[5,8,11,14-tetrahydroxy-9,12-bis(hydroxymethyl)-6-isopropyl-16-methyl-2-oxo-3-(sec-butyl)-1-oxa-4,7,10,13-tetraazacyclohexadeca-4,7,10,13-tetraen-15-yl]dodec-5-enimidic acid

Description

N-[3-(butan-2-yl)-5,8,11,14-tetrahydroxy-9,12-bis(hydroxymethyl)-16-methyl-2-oxo-6-(propan-2-yl)-1-oxa-4,7,10,13-tetraazacyclohexadeca-4,7,10,13-tetraen-15-yl]dodec-5-enimidic acid belongs to the class of organic compounds known as cyclic depsipeptides. These are natural or synthetic compounds having sequences of amino and hydroxy carboxylic acid residues (usually α-amino and α-hydroxy acids) connected in a ring. The residues are commonly but not necessarily regularly alternating. Based on a literature review very few articles have been published on N-[3-(butan-2-yl)-5,8,11,14-tetrahydroxy-9,12-bis(hydroxymethyl)-16-methyl-2-oxo-6-(propan-2-yl)-1-oxa-4,7,10,13-tetraazacyclohexadeca-4,7,10,13-tetraen-15-yl]dodec-5-enimidic acid.

Structure

MOL 3D MOL SDF PDB SMILES InChI


  Mrv1652309052209182D          

 47 47  0  0  0  0            999 V2000
   -5.7158   -4.9500    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.0013   -5.3625    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.2868   -4.9500    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5724   -5.3625    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8579   -4.9500    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1434   -5.3625    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4289   -4.9500    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7145   -5.3625    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0000   -4.9500    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7145   -5.3625    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7145   -6.1875    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4289   -6.6000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.1434   -6.1875    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.4289   -7.4250    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    2.1434   -7.8375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.1434   -7.0125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.8079   -6.2588    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.8579   -6.6000    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    3.5724   -7.0125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.2868   -6.6000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.2868   -5.7750    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.5724   -7.8375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.8579   -8.2500    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.2868   -8.2500    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    4.2868   -9.0750    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.0013   -8.6625    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.0013   -7.8375    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.0013   -9.4875    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.7158   -9.0750    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.0013  -10.3125    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    4.2868  -10.7250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.2868  -11.5500    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.0013  -11.9625    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.5724  -11.9625    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.5724  -10.3125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.5724   -9.4875    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.8579  -10.7250    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    2.1434  -10.3125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4289  -10.7250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7145  -10.3125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4289  -11.5500    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7145  -11.9625    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.1434   -9.4875    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.8579   -9.0750    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.4289   -9.0750    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.4289   -8.2500    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7145   -7.8375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  1  0  0  0  0
  3  4  1  0  0  0  0
  4  5  1  0  0  0  0
  5  6  1  0  0  0  0
  7  6  1  4  0  0  0
  7  8  2  0  0  0  0
  8  9  1  0  0  0  0
  9 10  1  0  0  0  0
 10 11  1  0  0  0  0
 11 12  1  0  0  0  0
 12 13  1  0  0  0  0
 12 14  2  0  0  0  0
 14 15  1  4  0  0  0
 15 16  1  0  0  0  0
 16 17  1  0  0  0  0
 16 18  2  0  0  0  0
 18 19  1  4  0  0  0
 19 20  1  0  0  0  0
 20 21  1  0  0  0  0
 19 22  1  0  0  0  0
 22 23  1  0  0  0  0
 22 24  2  0  0  0  0
 24 25  1  4  0  0  0
 25 26  1  0  0  0  0
 26 27  1  0  0  0  0
 25 28  1  0  0  0  0
 28 29  1  0  0  0  0
 28 30  2  0  0  0  0
 30 31  1  4  0  0  0
 31 32  1  0  0  0  0
 32 33  1  0  0  0  0
 32 34  1  0  0  0  0
 31 35  1  0  0  0  0
 35 36  1  0  0  0  0
 35 37  2  0  0  0  0
 37 38  1  4  0  0  0
 38 39  1  0  0  0  0
 39 40  1  0  0  0  0
 39 41  1  0  0  0  0
 41 42  1  0  0  0  0
 38 43  1  0  0  0  0
 43 44  2  0  0  0  0
 43 45  1  0  0  0  0
 45 46  1  0  0  0  0
 15 46  1  0  0  0  0
 46 47  1  0  0  0  0
M  END

     RDKit          3D

104104  0  0  0  0  0  0  0  0999 V2000
   11.9353    0.9662   -0.3562 C   0  0  0  0  0  0  0  0  0  0  0  0
   10.7849    1.9210   -0.2367 C   0  0  0  0  0  0  0  0  0  0  0  0
    9.4484    1.1620   -0.1016 C   0  0  0  0  0  0  0  0  0  0  0  0
    9.4895    0.3019    1.1248 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.1973   -0.4436    1.3041 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.9247   -1.3285    0.1005 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.7211   -2.1044    0.3393 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.6243   -2.0894   -0.3836 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.4175   -1.2853   -1.5629 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.3749   -0.2800   -1.6931 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.9348   -0.4990   -1.6869 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.1482   -0.9715   -0.5725 C   0  0  0  0  0  0  0  0  0  0  0  0
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    1.1110   -0.4731   -0.1558 N   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0100    0.0361    0.3225 C   0  0  2  0  0  0  0  0  0  0  0  0
   -0.8577   -0.9117    1.1897 C   0  0  0  0  0  0  0  0  0  0  0  0
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   -0.8495   -2.0919    0.9693 N   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1462   -3.4156    1.0957 C   0  0  2  0  0  0  0  0  0  0  0  0
    0.0486   -4.3558    0.7675 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.4833   -4.1933   -0.5316 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2604   -3.9645    0.3511 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2687   -5.4068    0.2985 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.1816   -3.4411   -0.2318 N   0  0  0  0  0  0  0  0  0  0  0  0
   -3.7036   -2.1696   -0.5341 C   0  0  1  0  0  0  0  0  0  0  0  0
   -4.7078   -2.3783   -1.6844 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.2525   -1.1985   -2.1356 O   0  0  0  0  0  0  0  0  0  0  0  0
   -4.4340   -1.5487    0.6095 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.8161   -2.0417    1.8607 O   0  0  0  0  0  0  0  0  0  0  0  0
   -5.3283   -0.7971    0.7206 N   0  0  0  0  0  0  0  0  0  0  0  0
   -6.3689    0.0773    0.8340 C   0  0  2  0  0  0  0  0  0  0  0  0
   -7.7342   -0.5864    1.0752 C   0  0  0  0  0  0  0  0  0  0  0  0
   -8.2841   -1.3157   -0.0935 C   0  0  0  0  0  0  0  0  0  0  0  0
   -8.7020    0.5135    1.4509 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.4500    1.1030   -0.2799 C   0  0  0  0  0  0  0  0  0  0  0  0
   -7.7176    1.2372   -0.8327 O   0  0  0  0  0  0  0  0  0  0  0  0
   -5.4659    1.7084   -0.6058 N   0  0  0  0  0  0  0  0  0  0  0  0
   -4.2105    2.1989   -0.7216 C   0  0  1  0  0  0  0  0  0  0  0  0
   -4.2758    3.7371   -0.5593 C   0  0  1  0  0  0  0  0  0  0  0  0
   -4.5435    4.1634    0.8429 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.0565    4.4243   -1.0675 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.1434    5.9316   -0.8990 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.1172    1.7220    0.1785 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.1928    2.2579    1.3580 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1733    0.8544   -0.1634 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9211    0.7482   -0.6854 C   0  0  1  0  0  0  0  0  0  0  0  0
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   11.8055    0.2791   -1.2166 H   0  0  0  0  0  0  0  0  0  0  0  0
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    7.8364   -0.6573   -0.7571 H   0  0  0  0  0  0  0  0  0  0  0  0
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    0.3025    0.9050    1.0621 H   0  0  0  0  0  0  0  0  0  0  0  0
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  1  2  1  0
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 32 34  1  0
 38 39  1  0
 39 40  1  0
 39 41  1  0
 41 42  1  0
 16 15  1  0
  1 48  1  0
  1 49  1  0
  1 50  1  0
  2 51  1  0
  2 52  1  0
  3 53  1  0
  3 54  1  0
  4 55  1  0
  4 56  1  0
  5 57  1  0
  5 58  1  0
  6 59  1  0
  6 60  1  0
  7 61  1  0
  8 62  1  0
  9 63  1  0
  9 64  1  0
 10 65  1  0
 10 66  1  0
 11 67  1  0
 11 68  1  0
 13 69  1  0
 15 70  1  1
 46101  1  6
 47102  1  0
 47103  1  0
 47104  1  0
 38 91  1  6
 36 90  1  0
 31 82  1  1
 29 81  1  0
 25 77  1  6
 26 78  1  0
 26 79  1  0
 27 80  1  0
 23 76  1  0
 19 72  1  1
 20 73  1  0
 20 74  1  0
 21 75  1  0
 17 71  1  0
 32 83  1  0
 33 84  1  0
 33 85  1  0
 33 86  1  0
 34 87  1  0
 34 88  1  0
 34 89  1  0
 39 92  1  6
 40 93  1  0
 40 94  1  0
 40 95  1  0
 41 96  1  0
 41 97  1  0
 42 98  1  0
 42 99  1  0
 42100  1  0
M  END


  Mrv1652309052209182D          

 47 47  0  0  0  0            999 V2000
   -5.7158   -4.9500    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.0013   -5.3625    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.2868   -4.9500    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5724   -5.3625    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8579   -4.9500    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1434   -5.3625    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4289   -4.9500    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7145   -5.3625    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0000   -4.9500    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7145   -5.3625    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7145   -6.1875    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4289   -6.6000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.1434   -6.1875    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.4289   -7.4250    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    2.1434   -7.8375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.1434   -7.0125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.8079   -6.2588    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.8579   -6.6000    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    3.5724   -7.0125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.2868   -6.6000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.2868   -5.7750    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.5724   -7.8375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.8579   -8.2500    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.2868   -8.2500    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    4.2868   -9.0750    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.0013   -8.6625    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.0013   -7.8375    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.0013   -9.4875    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.7158   -9.0750    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.0013  -10.3125    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    4.2868  -10.7250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.2868  -11.5500    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.0013  -11.9625    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.5724  -11.9625    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.5724  -10.3125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.5724   -9.4875    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.8579  -10.7250    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    2.1434  -10.3125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4289  -10.7250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7145  -10.3125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4289  -11.5500    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7145  -11.9625    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.1434   -9.4875    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.8579   -9.0750    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.4289   -9.0750    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.4289   -8.2500    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7145   -7.8375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  1  0  0  0  0
  3  4  1  0  0  0  0
  4  5  1  0  0  0  0
  5  6  1  0  0  0  0
  7  6  1  4  0  0  0
  7  8  2  0  0  0  0
  8  9  1  0  0  0  0
  9 10  1  0  0  0  0
 10 11  1  0  0  0  0
 11 12  1  0  0  0  0
 12 13  1  0  0  0  0
 12 14  2  0  0  0  0
 14 15  1  4  0  0  0
 15 16  1  0  0  0  0
 16 17  1  0  0  0  0
 16 18  2  0  0  0  0
 18 19  1  4  0  0  0
 19 20  1  0  0  0  0
 20 21  1  0  0  0  0
 19 22  1  0  0  0  0
 22 23  1  0  0  0  0
 22 24  2  0  0  0  0
 24 25  1  4  0  0  0
 25 26  1  0  0  0  0
 26 27  1  0  0  0  0
 25 28  1  0  0  0  0
 28 29  1  0  0  0  0
 28 30  2  0  0  0  0
 30 31  1  4  0  0  0
 31 32  1  0  0  0  0
 32 33  1  0  0  0  0
 32 34  1  0  0  0  0
 31 35  1  0  0  0  0
 35 36  1  0  0  0  0
 35 37  2  0  0  0  0
 37 38  1  4  0  0  0
 38 39  1  0  0  0  0
 39 40  1  0  0  0  0
 39 41  1  0  0  0  0
 41 42  1  0  0  0  0
 38 43  1  0  0  0  0
 43 44  2  0  0  0  0
 43 45  1  0  0  0  0
 45 46  1  0  0  0  0
 15 46  1  0  0  0  0
 46 47  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0209760

> <DATABASE_NAME>
NP-MRD

> <SMILES>
CCCCCCC=CCCCC(O)=NC1C(C)OC(=O)C(N=C(O)C(N=C(O)C(CO)N=C(O)C(CO)N=C1O)C(C)C)C(C)CC

> <INCHI_IDENTIFIER>
InChI=1S/C33H57N5O9/c1-7-9-10-11-12-13-14-15-16-17-25(41)36-28-22(6)47-33(46)27(21(5)8-2)38-31(44)26(20(3)4)37-30(43)24(19-40)34-29(42)23(18-39)35-32(28)45/h13-14,20-24,26-28,39-40H,7-12,15-19H2,1-6H3,(H,34,42)(H,35,45)(H,36,41)(H,37,43)(H,38,44)

> <INCHI_KEY>
QVFWSRMQRGDMSW-UHFFFAOYSA-N

> <FORMULA>
C33H57N5O9

> <MOLECULAR_WEIGHT>
667.845

> <EXACT_MASS>
667.415628435

> <JCHEM_ACCEPTOR_COUNT>
13

> <JCHEM_ATOM_COUNT>
104

> <JCHEM_AVERAGE_POLARIZABILITY>
73.84981032384822

> <JCHEM_BIOAVAILABILITY>
0

> <JCHEM_DONOR_COUNT>
7

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
N-[3-(butan-2-yl)-5,8,11,14-tetrahydroxy-9,12-bis(hydroxymethyl)-16-methyl-2-oxo-6-(propan-2-yl)-1-oxa-4,7,10,13-tetraazacyclohexadeca-4,7,10,13-tetraen-15-yl]dodec-5-enimidic acid

> <JCHEM_LOGP>
3.9993001657234304

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
1

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA>
3.1706366852799714

> <JCHEM_PKA_STRONGEST_ACIDIC>
1.97602306101791

> <JCHEM_PKA_STRONGEST_BASIC>
4.156024197896665

> <JCHEM_POLAR_SURFACE_AREA>
229.70999999999995

> <JCHEM_REFRACTIVITY>
177.04160000000005

> <JCHEM_ROTATABLE_BOND_COUNT>
15

> <JCHEM_RULE_OF_FIVE>
0

> <JCHEM_TRADITIONAL_IUPAC>
N-[5,8,11,14-tetrahydroxy-9,12-bis(hydroxymethyl)-6-isopropyl-16-methyl-2-oxo-3-(sec-butyl)-1-oxa-4,7,10,13-tetraazacyclohexadeca-4,7,10,13-tetraen-15-yl]dodec-5-enimidic acid

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 05-SEP-22   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   05-SEP-22         0                                  
HETATM    1  C   UNK     0     -10.669  -9.240   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0      -9.336 -10.010   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0      -8.002  -9.240   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0      -6.668 -10.010   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0      -5.335  -9.240   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0      -4.001 -10.010   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0      -2.667  -9.240   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0      -1.334 -10.010   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0      -0.000  -9.240   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0       1.334 -10.010   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0       1.334 -11.550   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0       2.667 -12.320   0.000  0.00  0.00           C+0
HETATM   13  O   UNK     0       4.001 -11.550   0.000  0.00  0.00           O+0
HETATM   14  N   UNK     0       2.667 -13.860   0.000  0.00  0.00           N+0
HETATM   15  C   UNK     0       4.001 -14.630   0.000  0.00  0.00           C+0
HETATM   16  C   UNK     0       4.001 -13.090   0.000  0.00  0.00           C+0
HETATM   17  O   UNK     0       3.375 -11.683   0.000  0.00  0.00           O+0
HETATM   18  N   UNK     0       5.335 -12.320   0.000  0.00  0.00           N+0
HETATM   19  C   UNK     0       6.668 -13.090   0.000  0.00  0.00           C+0
HETATM   20  C   UNK     0       8.002 -12.320   0.000  0.00  0.00           C+0
HETATM   21  O   UNK     0       8.002 -10.780   0.000  0.00  0.00           O+0
HETATM   22  C   UNK     0       6.668 -14.630   0.000  0.00  0.00           C+0
HETATM   23  O   UNK     0       5.335 -15.400   0.000  0.00  0.00           O+0
HETATM   24  N   UNK     0       8.002 -15.400   0.000  0.00  0.00           N+0
HETATM   25  C   UNK     0       8.002 -16.940   0.000  0.00  0.00           C+0
HETATM   26  C   UNK     0       9.336 -16.170   0.000  0.00  0.00           C+0
HETATM   27  O   UNK     0       9.336 -14.630   0.000  0.00  0.00           O+0
HETATM   28  C   UNK     0       9.336 -17.710   0.000  0.00  0.00           C+0
HETATM   29  O   UNK     0      10.669 -16.940   0.000  0.00  0.00           O+0
HETATM   30  N   UNK     0       9.336 -19.250   0.000  0.00  0.00           N+0
HETATM   31  C   UNK     0       8.002 -20.020   0.000  0.00  0.00           C+0
HETATM   32  C   UNK     0       8.002 -21.560   0.000  0.00  0.00           C+0
HETATM   33  C   UNK     0       9.336 -22.330   0.000  0.00  0.00           C+0
HETATM   34  C   UNK     0       6.668 -22.330   0.000  0.00  0.00           C+0
HETATM   35  C   UNK     0       6.668 -19.250   0.000  0.00  0.00           C+0
HETATM   36  O   UNK     0       6.668 -17.710   0.000  0.00  0.00           O+0
HETATM   37  N   UNK     0       5.335 -20.020   0.000  0.00  0.00           N+0
HETATM   38  C   UNK     0       4.001 -19.250   0.000  0.00  0.00           C+0
HETATM   39  C   UNK     0       2.667 -20.020   0.000  0.00  0.00           C+0
HETATM   40  C   UNK     0       1.334 -19.250   0.000  0.00  0.00           C+0
HETATM   41  C   UNK     0       2.667 -21.560   0.000  0.00  0.00           C+0
HETATM   42  C   UNK     0       1.334 -22.330   0.000  0.00  0.00           C+0
HETATM   43  C   UNK     0       4.001 -17.710   0.000  0.00  0.00           C+0
HETATM   44  O   UNK     0       5.335 -16.940   0.000  0.00  0.00           O+0
HETATM   45  O   UNK     0       2.667 -16.940   0.000  0.00  0.00           O+0
HETATM   46  C   UNK     0       2.667 -15.400   0.000  0.00  0.00           C+0
HETATM   47  C   UNK     0       1.334 -14.630   0.000  0.00  0.00           C+0
CONECT    1    2                                                            
CONECT    2    1    3                                                       
CONECT    3    2    4                                                       
CONECT    4    3    5                                                       
CONECT    5    4    6                                                       
CONECT    6    5    7                                                       
CONECT    7    6    8                                                       
CONECT    8    7    9                                                       
CONECT    9    8   10                                                       
CONECT   10    9   11                                                       
CONECT   11   10   12                                                       
CONECT   12   11   13   14                                                  
CONECT   13   12                                                            
CONECT   14   12   15                                                       
CONECT   15   14   16   46                                                  
CONECT   16   15   17   18                                                  
CONECT   17   16                                                            
CONECT   18   16   19                                                       
CONECT   19   18   20   22                                                  
CONECT   20   19   21                                                       
CONECT   21   20                                                            
CONECT   22   19   23   24                                                  
CONECT   23   22                                                            
CONECT   24   22   25                                                       
CONECT   25   24   26   28                                                  
CONECT   26   25   27                                                       
CONECT   27   26                                                            
CONECT   28   25   29   30                                                  
CONECT   29   28                                                            
CONECT   30   28   31                                                       
CONECT   31   30   32   35                                                  
CONECT   32   31   33   34                                                  
CONECT   33   32                                                            
CONECT   34   32                                                            
CONECT   35   31   36   37                                                  
CONECT   36   35                                                            
CONECT   37   35   38                                                       
CONECT   38   37   39   43                                                  
CONECT   39   38   40   41                                                  
CONECT   40   39                                                            
CONECT   41   39   42                                                       
CONECT   42   41                                                            
CONECT   43   38   44   45                                                  
CONECT   44   43                                                            
CONECT   45   43   46                                                       
CONECT   46   45   15   47                                                  
CONECT   47   46                                                            
MASTER        0    0    0    0    0    0    0    0   47    0   94    0
END

View in JSmol

Synonyms

Value	Source
N-[3-(Butan-2-yl)-5,8,11,14-tetrahydroxy-9,12-bis(hydroxymethyl)-16-methyl-2-oxo-6-(propan-2-yl)-1-oxa-4,7,10,13-tetraazacyclohexadeca-4,7,10,13-tetraen-15-yl]dodec-5-enimidate	Generator

Chemical Formula

C₃₃H₅₇N₅O₉

Average Mass

667.8450 Da

Monoisotopic Mass

667.41563 Da

IUPAC Name

N-[3-(butan-2-yl)-5,8,11,14-tetrahydroxy-9,12-bis(hydroxymethyl)-16-methyl-2-oxo-6-(propan-2-yl)-1-oxa-4,7,10,13-tetraazacyclohexadeca-4,7,10,13-tetraen-15-yl]dodec-5-enimidic acid

Traditional Name

N-[5,8,11,14-tetrahydroxy-9,12-bis(hydroxymethyl)-6-isopropyl-16-methyl-2-oxo-3-(sec-butyl)-1-oxa-4,7,10,13-tetraazacyclohexadeca-4,7,10,13-tetraen-15-yl]dodec-5-enimidic acid

CAS Registry Number

Not Available

SMILES

CCCCCCC=CCCCC(O)=NC1C(C)OC(=O)C(N=C(O)C(N=C(O)C(CO)N=C(O)C(CO)N=C1O)C(C)C)C(C)CC

InChI Identifier

InChI=1S/C33H57N5O9/c1-7-9-10-11-12-13-14-15-16-17-25(41)36-28-22(6)47-33(46)27(21(5)8-2)38-31(44)26(20(3)4)37-30(43)24(19-40)34-29(42)23(18-39)35-32(28)45/h13-14,20-24,26-28,39-40H,7-12,15-19H2,1-6H3,(H,34,42)(H,35,45)(H,36,41)(H,37,43)(H,38,44)

InChI Key

QVFWSRMQRGDMSW-UHFFFAOYSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Not Available

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as cyclic depsipeptides. These are natural or synthetic compounds having sequences of amino and hydroxy carboxylic acid residues (usually α-amino and α-hydroxy acids) connected in a ring. The residues are commonly but not necessarily regularly alternating.

Kingdom

Organic compounds

Super Class

Organic acids and derivatives

Class

Peptidomimetics

Sub Class

Depsipeptides

Direct Parent

Cyclic depsipeptides

Alternative Parents

Substituents

Cyclic depsipeptide
Macrolide lactam
N-acyl-alpha amino acid or derivatives
Macrolactam
Alpha-amino acid ester
Alpha-amino acid or derivatives
Fatty acyl
N-acyl-amine
Fatty amide
Secondary carboxylic acid amide
Lactone
Lactam
Carboxylic acid ester
Carboxamide group
Oxacycle
Azacycle
Organoheterocyclic compound
Monocarboxylic acid or derivatives
Carboxylic acid derivative
Organic nitrogen compound
Organic oxygen compound
Organopnictogen compound
Organic oxide
Hydrocarbon derivative
Primary alcohol
Organooxygen compound
Organonitrogen compound
Carbonyl group
Alcohol
Aliphatic heteromonocyclic compound

Molecular Framework

Aliphatic heteromonocyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	4	ChemAxon
pKa (Strongest Acidic)	1.98	ChemAxon
pKa (Strongest Basic)	4.16	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	13	ChemAxon
Hydrogen Donor Count	7	ChemAxon
Polar Surface Area	229.71 Å²	ChemAxon
Rotatable Bond Count	15	ChemAxon
Refractivity	177.04 m³·mol⁻¹	ChemAxon
Polarizability	73.85 Å³	ChemAxon
Number of Rings	1	ChemAxon
Bioavailability	No	ChemAxon
Rule of Five	No	ChemAxon
Ghose Filter	No	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

Not Available

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

162814626

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

LOTUS database [Link]

Showing NP-Card for n-[5,8,11,14-tetrahydroxy-9,12-bis(hydroxymethyl)-6-isopropyl-16-methyl-2-oxo-3-(sec-butyl)-1-oxa-4,7,10,13-tetraazacyclohexadeca-4,7,10,13-tetraen-15-yl]dodec-5-enimidic acid (NP0209760)

MOL for NP0209760 (n-[5,8,11,14-tetrahydroxy-9,12-bis(hydroxymethyl)-6-isopropyl-16-methyl-2-oxo-3-(sec-butyl)-1-oxa-4,7,10,13-tetraazacyclohexadeca-4,7,10,13-tetraen-15-yl]dodec-5-enimidic acid)

3D MOL for NP0209760 (n-[5,8,11,14-tetrahydroxy-9,12-bis(hydroxymethyl)-6-isopropyl-16-methyl-2-oxo-3-(sec-butyl)-1-oxa-4,7,10,13-tetraazacyclohexadeca-4,7,10,13-tetraen-15-yl]dodec-5-enimidic acid)

3D SDF for NP0209760 (n-[5,8,11,14-tetrahydroxy-9,12-bis(hydroxymethyl)-6-isopropyl-16-methyl-2-oxo-3-(sec-butyl)-1-oxa-4,7,10,13-tetraazacyclohexadeca-4,7,10,13-tetraen-15-yl]dodec-5-enimidic acid)

3D-SDF for NP0209760 (n-[5,8,11,14-tetrahydroxy-9,12-bis(hydroxymethyl)-6-isopropyl-16-methyl-2-oxo-3-(sec-butyl)-1-oxa-4,7,10,13-tetraazacyclohexadeca-4,7,10,13-tetraen-15-yl]dodec-5-enimidic acid)

PDB for NP0209760 (n-[5,8,11,14-tetrahydroxy-9,12-bis(hydroxymethyl)-6-isopropyl-16-methyl-2-oxo-3-(sec-butyl)-1-oxa-4,7,10,13-tetraazacyclohexadeca-4,7,10,13-tetraen-15-yl]dodec-5-enimidic acid)

3D PDB for NP0209760 (n-[5,8,11,14-tetrahydroxy-9,12-bis(hydroxymethyl)-6-isopropyl-16-methyl-2-oxo-3-(sec-butyl)-1-oxa-4,7,10,13-tetraazacyclohexadeca-4,7,10,13-tetraen-15-yl]dodec-5-enimidic acid)

SMILES for NP0209760 (n-[5,8,11,14-tetrahydroxy-9,12-bis(hydroxymethyl)-6-isopropyl-16-methyl-2-oxo-3-(sec-butyl)-1-oxa-4,7,10,13-tetraazacyclohexadeca-4,7,10,13-tetraen-15-yl]dodec-5-enimidic acid)

INCHI for NP0209760 (n-[5,8,11,14-tetrahydroxy-9,12-bis(hydroxymethyl)-6-isopropyl-16-methyl-2-oxo-3-(sec-butyl)-1-oxa-4,7,10,13-tetraazacyclohexadeca-4,7,10,13-tetraen-15-yl]dodec-5-enimidic acid)

Structure for NP0209760 (n-[5,8,11,14-tetrahydroxy-9,12-bis(hydroxymethyl)-6-isopropyl-16-methyl-2-oxo-3-(sec-butyl)-1-oxa-4,7,10,13-tetraazacyclohexadeca-4,7,10,13-tetraen-15-yl]dodec-5-enimidic acid)

3D Structure for NP0209760 (n-[5,8,11,14-tetrahydroxy-9,12-bis(hydroxymethyl)-6-isopropyl-16-methyl-2-oxo-3-(sec-butyl)-1-oxa-4,7,10,13-tetraazacyclohexadeca-4,7,10,13-tetraen-15-yl]dodec-5-enimidic acid)