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Record Information
Version2.0
Created at2022-09-05 05:45:33 UTC
Updated at2022-09-05 05:45:33 UTC
NP-MRD IDNP0208668
Secondary Accession NumbersNone
Natural Product Identification
Common Name3-oxo-n-[(3s)-2-oxooxolan-3-yl]dodecanimidic acid
DescriptionN-3-OXO-DODECANOYL-L-HOMOSERINE LACTONE, also known as 3-oxo-C12-ahl or N-(3-ketododecanoyl)-L-homoserine lactone, belongs to the class of organic compounds known as n-acyl-alpha amino acids and derivatives. N-acyl-alpha amino acids and derivatives are compounds containing an alpha amino acid (or a derivative thereof) which bears an acyl group at its terminal nitrogen atom. Thus, N-3-oxo-dodecanoyl-L-homoserine lactone is considered to be a fatty amide lipid molecule. 3-oxo-n-[(3s)-2-oxooxolan-3-yl]dodecanimidic acid was first documented in 1999 (PMID: 10556916). N-3-OXO-DODECANOYL-L-HOMOSERINE LACTONE is a very hydrophobic molecule, practically insoluble (in water), and relatively neutral (PMID: 16495538) (PMID: 25188245).
Structure
Thumb
Synonyms
ValueSource
3-oxo-C12-AHLChEBI
3-oxo-C12-HSLChEBI
N-(3-Ketododecanoyl)-L-homoserine lactoneChEBI
3-oxo-C8-HSLMeSH
N-(3-Oxododecanoyl)-L-homoserine lactoneMeSH
N-(3-Oxododecanoyl)homoserine lactoneMeSH
N-3-Oxododecanoyl-L-homoserine lactoneMeSH
3O-C12-HSLMeSH
N-(3-Oxododecanoyl)-homoserine lactoneMeSH
N3-ODDHLMeSH
Chemical FormulaC16H27NO4
Average Mass297.3899 Da
Monoisotopic Mass297.19401 Da
IUPAC Name3-oxo-N-[(3S)-2-oxooxolan-3-yl]dodecanamide
Traditional Name3-oxo-C12-HSL
CAS Registry NumberNot Available
SMILES
[H][C@@]1(CCOC1=O)NC(=O)CC(=O)CCCCCCCCC
InChI Identifier
InChI=1S/C16H27NO4/c1-2-3-4-5-6-7-8-9-13(18)12-15(19)17-14-10-11-21-16(14)20/h14H,2-12H2,1H3,(H,17,19)/t14-/m0/s1
InChI KeyPHSRRHGYXQCRPU-AWEZNQCLSA-N
Experimental Spectra
Not Available
Predicted Spectra
Spectrum TypeDescriptionDepositor IDDepositor OrganizationDepositorDeposition DateView
1D NMR13C NMR Spectrum (1D, 25 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 100 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 252 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 1000 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 50 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 200 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 75 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 300 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 101 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 400 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 126 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 500 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 151 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 600 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 176 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 700 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 201 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 800 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 226 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 900 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
Chemical Shift Submissions
Not Available
Species
Species of OriginNot Available
Chemical Taxonomy
Description Belongs to the class of organic compounds known as n-acyl-alpha amino acids and derivatives. N-acyl-alpha amino acids and derivatives are compounds containing an alpha amino acid (or a derivative thereof) which bears an acyl group at its terminal nitrogen atom.
KingdomOrganic compounds
Super ClassOrganic acids and derivatives
ClassCarboxylic acids and derivatives
Sub ClassAmino acids, peptides, and analogues
Direct ParentN-acyl-alpha amino acids and derivatives
Alternative Parents
Substituents
  • Alpha-amino acid ester
  • N-acyl-alpha amino acid or derivatives
  • Acyl-homoserine lactone
  • Acyl-l-homoserine lactone
  • Fatty amide
  • Gamma butyrolactone
  • Fatty acyl
  • 1,3-dicarbonyl compound
  • N-acyl-amine
  • Tetrahydrofuran
  • Carboxamide group
  • Carboxylic acid ester
  • Ketone
  • Secondary carboxylic acid amide
  • Lactone
  • Oxacycle
  • Organoheterocyclic compound
  • Monocarboxylic acid or derivatives
  • Organic nitrogen compound
  • Hydrocarbon derivative
  • Organic oxide
  • Organopnictogen compound
  • Carbonyl group
  • Organooxygen compound
  • Organic oxygen compound
  • Organonitrogen compound
  • Aliphatic heteromonocyclic compound
Molecular FrameworkAliphatic heteromonocyclic compounds
External Descriptors
Physical Properties
StateNot Available
Experimental Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Predicted Properties
PropertyValueSource
logP2.9ALOGPS
logP2.95ChemAxon
logS-3.8ALOGPS
pKa (Strongest Acidic)10.31ChemAxon
pKa (Strongest Basic)-3.9ChemAxon
Physiological Charge0ChemAxon
Hydrogen Acceptor Count3ChemAxon
Hydrogen Donor Count1ChemAxon
Polar Surface Area72.47 ŲChemAxon
Rotatable Bond Count11ChemAxon
Refractivity79.59 m³·mol⁻¹ChemAxon
Polarizability34.12 ųChemAxon
Number of Rings1ChemAxon
BioavailabilityYesChemAxon
Rule of FiveYesChemAxon
Ghose FilterYesChemAxon
Veber's RuleNoChemAxon
MDDR-like RuleNoChemAxon
HMDB IDNot Available
DrugBank IDDB08324
Phenol Explorer Compound IDNot Available
FoodDB IDNot Available
KNApSAcK IDNot Available
Chemspider IDNot Available
KEGG Compound IDNot Available
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem Compound3246941
PDB IDNot Available
ChEBI ID44534
Good Scents IDNot Available
References
General References
  1. Lawrence RN, Dunn WR, Bycroft B, Camara M, Chhabra SR, Williams P, Wilson VG: The Pseudomonas aeruginosa quorum-sensing signal molecule, N-(3-oxododecanoyl)-L-homoserine lactone, inhibits porcine arterial smooth muscle contraction. Br J Pharmacol. 1999 Oct;128(4):845-8. doi: 10.1038/sj.bjp.0702870. [PubMed:10556916 ]
  2. Sio CF, Otten LG, Cool RH, Diggle SP, Braun PG, Bos R, Daykin M, Camara M, Williams P, Quax WJ: Quorum quenching by an N-acyl-homoserine lactone acylase from Pseudomonas aeruginosa PAO1. Infect Immun. 2006 Mar;74(3):1673-82. doi: 10.1128/IAI.74.3.1673-1682.2006. [PubMed:16495538 ]
  3. Kumar AS, Bryan JN, Kumar SR: Bacterial quorum sensing molecule N-3-oxo-dodecanoyl-L-homoserine lactone causes direct cytotoxicity and reduced cell motility in human pancreatic carcinoma cells. PLoS One. 2014 Sep 4;9(9):e106480. doi: 10.1371/journal.pone.0106480. eCollection 2014. [PubMed:25188245 ]
  4. LOTUS database [Link]