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Record Information
Version2.0
Created at2022-09-05 05:06:36 UTC
Updated at2022-09-05 05:06:36 UTC
NP-MRD IDNP0208199
Secondary Accession NumbersNone
Natural Product Identification
Common Name(1r,5r,7s)-1-(3,4-dihydroxybenzoyl)-4-hydroxy-8,8-dimethyl-7-[(2s)-5-methyl-2-(prop-1-en-2-yl)hex-5-en-1-yl]-3,5-bis(3-methylbut-2-en-1-yl)bicyclo[3.3.1]non-3-ene-2,9-dione
DescriptionGarcinielliptone FC belongs to the class of organic compounds known as sesquiterpenoids. These are terpenes with three consecutive isoprene units. (1r,5r,7s)-1-(3,4-dihydroxybenzoyl)-4-hydroxy-8,8-dimethyl-7-[(2s)-5-methyl-2-(prop-1-en-2-yl)hex-5-en-1-yl]-3,5-bis(3-methylbut-2-en-1-yl)bicyclo[3.3.1]non-3-ene-2,9-dione is found in Garcinia subelliptica. (1r,5r,7s)-1-(3,4-dihydroxybenzoyl)-4-hydroxy-8,8-dimethyl-7-[(2s)-5-methyl-2-(prop-1-en-2-yl)hex-5-en-1-yl]-3,5-bis(3-methylbut-2-en-1-yl)bicyclo[3.3.1]non-3-ene-2,9-dione was first documented in 2017 (PMID: 28054742). Based on a literature review a small amount of articles have been published on garcinielliptone FC (PMID: 34944411) (PMID: 31862617) (PMID: 29575551) (PMID: 28294332).
Structure
Thumb
SynonymsNot Available
Chemical FormulaC38H50O6
Average Mass602.8120 Da
Monoisotopic Mass602.36074 Da
IUPAC Name(1R,5R,7S)-1-(3,4-dihydroxybenzoyl)-4-hydroxy-8,8-dimethyl-7-[(2S)-5-methyl-2-(prop-1-en-2-yl)hex-5-en-1-yl]-3,5-bis(3-methylbut-2-en-1-yl)bicyclo[3.3.1]non-3-ene-2,9-dione
Traditional Name(1R,5R,7S)-1-(3,4-dihydroxybenzoyl)-4-hydroxy-8,8-dimethyl-7-[(2S)-5-methyl-2-(prop-1-en-2-yl)hex-5-en-1-yl]-3,5-bis(3-methylbut-2-en-1-yl)bicyclo[3.3.1]non-3-ene-2,9-dione
CAS Registry NumberNot Available
SMILES
CC(C)=CCC1=C(O)[C@@]2(CC=C(C)C)C[C@H](C[C@H](CCC(C)=C)C(C)=C)C(C)(C)[C@@](C(=O)C3=CC=C(O)C(O)=C3)(C1=O)C2=O
InChI Identifier
InChI=1S/C38H50O6/c1-22(2)11-13-26(25(7)8)19-28-21-37(18-17-24(5)6)33(42)29(15-12-23(3)4)34(43)38(35(37)44,36(28,9)10)32(41)27-14-16-30(39)31(40)20-27/h12,14,16-17,20,26,28,39-40,42H,1,7,11,13,15,18-19,21H2,2-6,8-10H3/t26-,28-,37+,38-/m0/s1
InChI KeyBZLTYFKCXDZVOR-KGASDRPUSA-N
Experimental Spectra
Not Available
Predicted Spectra
Spectrum TypeDescriptionDepositor IDDepositor OrganizationDepositorDeposition DateView
1D NMR13C NMR Spectrum (1D, 25 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 100 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 252 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 1000 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 50 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 200 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 75 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 300 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 101 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 400 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 126 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 500 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 151 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 600 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 176 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 700 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 201 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 800 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 226 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 900 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
Chemical Shift Submissions
Not Available
Species
Species of Origin
Species NameSourceReference
Garcinia subellipticaLOTUS Database
Chemical Taxonomy
Description Belongs to the class of organic compounds known as sesquiterpenoids. These are terpenes with three consecutive isoprene units.
KingdomOrganic compounds
Super ClassLipids and lipid-like molecules
ClassPrenol lipids
Sub ClassSesquiterpenoids
Direct ParentSesquiterpenoids
Alternative Parents
Substituents
  • Sesquiterpenoid
  • Alkyl-phenylketone
  • Phenylketone
  • Benzoyl
  • Catechol
  • Aryl ketone
  • Aryl alkyl ketone
  • 1-hydroxy-4-unsubstituted benzenoid
  • Phenol
  • 1-hydroxy-2-unsubstituted benzenoid
  • Cyclohexenone
  • Benzenoid
  • Monocyclic benzene moiety
  • Vinylogous acid
  • Ketone
  • Enol
  • Hydrocarbon derivative
  • Carbonyl group
  • Organooxygen compound
  • Organic oxygen compound
  • Organic oxide
  • Aromatic homopolycyclic compound
Molecular FrameworkAromatic homopolycyclic compounds
External DescriptorsNot Available
Physical Properties
StateNot Available
Experimental Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Predicted Properties
PropertyValueSource
logP9.2ChemAxon
pKa (Strongest Acidic)4.33ChemAxon
pKa (Strongest Basic)-6.3ChemAxon
Physiological Charge-1ChemAxon
Hydrogen Acceptor Count6ChemAxon
Hydrogen Donor Count3ChemAxon
Polar Surface Area111.9 ŲChemAxon
Rotatable Bond Count12ChemAxon
Refractivity179.51 m³·mol⁻¹ChemAxon
Polarizability68.02 ųChemAxon
Number of Rings3ChemAxon
BioavailabilityNoChemAxon
Rule of FiveNoChemAxon
Ghose FilterNoChemAxon
Veber's RuleNoChemAxon
MDDR-like RuleYesChemAxon
HMDB IDNot Available
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FoodDB IDNot Available
KNApSAcK IDNot Available
Chemspider IDNot Available
KEGG Compound IDNot Available
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem Compound24850574
PDB IDNot Available
ChEBI IDNot Available
Good Scents IDNot Available
References
General References
  1. Yamaguchi KKL, Dias DS, Lamarao CV, Castelo KFA, Lima MS, Antonio AS, Converti A, Lima ES, Veiga-Junior VF: Amazonian Bacuri (Platonia insignis Mart.) Fruit Waste Valorisation Using Response Surface Methodology. Biomolecules. 2021 Nov 25;11(12). pii: biom11121767. doi: 10.3390/biom11121767. [PubMed:34944411 ]
  2. Bezerra EA, Alves MMM, Amorim LV, Carvalho RCV, Cruz LPL, Costa-Junior JS, Oliveira MDDA, Lima Neto JS, Carvalho FAA, Cito AMDGL, Arcanjo DDR: Garcinielliptone FC: Selective anti-amastigote and immunomodulatory effects on macrophages infected by Leishmania amazonensis. Toxicol In Vitro. 2020 Mar;63:104750. doi: 10.1016/j.tiv.2019.104750. Epub 2019 Dec 18. [PubMed:31862617 ]
  3. Coelho VR, Prado LS, Rossato RR, Ferraz ABF, Vieira CG, de Souza LP, Pfluger P, Regner GG, Valle MTC, Leal MB, Dallegrave E, Correa DS, Picada JN, Pereira P: A 28-day Sub-acute Genotoxic and Behavioural Assessment of Garcinielliptone FC. Basic Clin Pharmacol Toxicol. 2018 Aug;123(2):207-212. doi: 10.1111/bcpt.13010. Epub 2018 May 23. [PubMed:29575551 ]
  4. Won SJ, Yen CH, Lin TY, Jiang-Shieh YF, Lin CN, Chen JT, Su CL: Autophagy mediates cytotoxicity of human colorectal cancer cells treated with garcinielliptone FC. J Cell Physiol. 2018 Jan;233(1):497-505. doi: 10.1002/jcp.25910. Epub 2017 May 3. [PubMed:28294332 ]
  5. da Silva Prado L, da Silva J, Garcia ALH, Boaretto FBM, Grivicich I, Conter LU, de Oliveira Salvi A, Reginatto FH, Vencato SB, de Barros Falcao Ferraz A, Picada JN: Evaluation of DNA Damage in HepG2 Cells and Mutagenicity of Garcinielliptone FC, A Bioactive Benzophenone. Basic Clin Pharmacol Toxicol. 2017 Jun;120(6):621-627. doi: 10.1111/bcpt.12753. Epub 2017 Mar 10. [PubMed:28054742 ]
  6. LOTUS database [Link]