NP-MRD: Showing NP-Card for (2s)-2-[(2r,5r)-5-ethenyl-5-methyloxolan-2-yl]-3-hydroxypropanoic acid (NP0207694)

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Record Information

Version

2.0

Created at

2022-09-05 04:24:31 UTC

Updated at

2022-09-05 04:24:31 UTC

NP-MRD ID

NP0207694

Secondary Accession Numbers

None

Natural Product Identification

Common Name

(2s)-2-[(2r,5r)-5-ethenyl-5-methyloxolan-2-yl]-3-hydroxypropanoic acid

Description

(2S)-2-[(2R,5R)-5-ethenyl-5-methyloxolan-2-yl]-3-hydroxypropanoic acid belongs to the class of organic compounds known as beta hydroxy acids and derivatives. Beta hydroxy acids and derivatives are compounds containing a carboxylic acid substituted with a hydroxyl group on the C3 carbon atom. (2s)-2-[(2r,5r)-5-ethenyl-5-methyloxolan-2-yl]-3-hydroxypropanoic acid is found in Acacia concinna. Based on a literature review very few articles have been published on (2S)-2-[(2R,5R)-5-ethenyl-5-methyloxolan-2-yl]-3-hydroxypropanoic acid.

Structure

MOL 3D MOL SDF PDB SMILES InChI

     RDKit          3D

 30 30  0  0  0  0  0  0  0  0999 V2000
    3.5916    1.4757    0.2356 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.2717    1.2954    0.2158 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.6347    0.1825   -0.5187 C   0  0  1  0  0  0  0  0  0  0  0  0
    2.4528   -0.2537   -1.7158 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4724   -1.0504    0.3617 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0332   -1.2341    0.3208 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4333    0.1961    0.1851 C   0  0  2  0  0  0  0  0  0  0  0  0
   -1.8863    0.4350    0.0028 C   0  0  2  0  0  0  0  0  0  0  0  0
   -2.6161   -0.1189    1.2092 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.9940    0.1000    1.0510 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4502   -0.1069   -1.2359 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7999   -0.7292   -2.1035 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.8067    0.0798   -1.4721 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.3586    0.5870   -0.8761 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.1921    0.7618   -0.3178 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.0320    2.3027    0.7841 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.6379    2.0088    0.7715 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.8687    0.5763   -2.2904 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.2863   -0.8812   -1.3087 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.8206   -0.9476   -2.3128 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.7295   -0.7627    1.3929 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.0185   -1.9190   -0.0138 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4214   -1.7347    1.2212 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2406   -1.8154   -0.6118 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1093    0.7308    1.1047 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0580    1.5302    0.0087 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4658   -1.1894    1.3500 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2495    0.3849    2.1361 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.4589   -0.7569    0.8112 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.3439    0.8533   -1.1343 H   0  0  0  0  0  0  0  0  0  0  0  0
  4  3  1  0
  3  5  1  0
  5  6  1  0
  6  7  1  0
  7 14  1  0
  7  8  1  0
  8  9  1  0
  9 10  1  0
  8 11  1  0
 11 13  1  0
 11 12  2  0
  3  2  1  1
  2  1  2  3
 14  3  1  0
  4 18  1  0
  4 19  1  0
  4 20  1  0
  5 21  1  0
  5 22  1  0
  6 23  1  0
  6 24  1  0
  7 25  1  1
  8 26  1  6
  9 27  1  0
  9 28  1  0
 10 29  1  0
 13 30  1  0
  2 17  1  0
  1 15  1  0
  1 16  1  0
M  END


  Mrv1652309052206242D          

 14 14  0  0  1  0            999 V2000
    0.8649    2.5120    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.1198    1.7274    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.5678    1.1143    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    0.0157    1.7274    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.2352    0.6294    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.9803   -0.1553    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.1553   -0.1553    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
   -0.3297   -0.8227    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
   -1.1501   -0.7365    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6351   -1.4039    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.0059   -1.5764    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4790   -2.2438    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.8264   -1.6626    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0997    0.6294    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  2  0  0  0  0
  3  2  1  1  0  0  0
  3  4  1  6  0  0  0
  3  5  1  0  0  0  0
  5  6  1  0  0  0  0
  6  7  1  0  0  0  0
  7  8  1  6  0  0  0
  8  9  1  1  0  0  0
  9 10  1  0  0  0  0
  8 11  1  0  0  0  0
 11 12  2  0  0  0  0
 11 13  1  0  0  0  0
  7 14  1  0  0  0  0
  3 14  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0207694

> <DATABASE_NAME>
NP-MRD

> <SMILES>
C[C@@]1(CC[C@@H](O1)[C@H](CO)C(O)=O)C=C

> <INCHI_IDENTIFIER>
InChI=1S/C10H16O4/c1-3-10(2)5-4-8(14-10)7(6-11)9(12)13/h3,7-8,11H,1,4-6H2,2H3,(H,12,13)/t7-,8+,10-/m0/s1

> <INCHI_KEY>
WLRVIKRNZCNFRS-XKSSXDPKSA-N

> <FORMULA>
C10H16O4

> <MOLECULAR_WEIGHT>
200.234

> <EXACT_MASS>
200.104858995

> <JCHEM_ACCEPTOR_COUNT>
4

> <JCHEM_ATOM_COUNT>
30

> <JCHEM_AVERAGE_POLARIZABILITY>
20.807450372149027

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
2

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
1

> <JCHEM_IUPAC>
(2S)-2-[(2R,5R)-5-ethenyl-5-methyloxolan-2-yl]-3-hydroxypropanoic acid

> <JCHEM_LOGP>
0.6389186996666663

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
1

> <JCHEM_PHYSIOLOGICAL_CHARGE>
-1

> <JCHEM_PKA>
15.427539804257535

> <JCHEM_PKA_STRONGEST_ACIDIC>
4.416062148241057

> <JCHEM_PKA_STRONGEST_BASIC>
-2.7330242612772047

> <JCHEM_POLAR_SURFACE_AREA>
66.76

> <JCHEM_REFRACTIVITY>
50.828

> <JCHEM_ROTATABLE_BOND_COUNT>
4

> <JCHEM_RULE_OF_FIVE>
1

> <JCHEM_TRADITIONAL_IUPAC>
(2S)-2-[(2R,5R)-5-ethenyl-5-methyloxolan-2-yl]-3-hydroxypropanoic acid

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 05-SEP-22   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   05-SEP-22         0                                  
HETATM    1  C   UNK     0       1.614   4.689   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0       2.090   3.224   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0       1.060   2.080   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0       0.029   3.224   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0       2.306   1.175   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0       1.830  -0.290   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0       0.290  -0.290   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0      -0.615  -1.536   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0      -2.147  -1.375   0.000  0.00  0.00           C+0
HETATM   10  O   UNK     0      -3.052  -2.621   0.000  0.00  0.00           O+0
HETATM   11  C   UNK     0       0.011  -2.943   0.000  0.00  0.00           C+0
HETATM   12  O   UNK     0      -0.894  -4.188   0.000  0.00  0.00           O+0
HETATM   13  O   UNK     0       1.543  -3.104   0.000  0.00  0.00           O+0
HETATM   14  O   UNK     0      -0.186   1.175   0.000  0.00  0.00           O+0
CONECT    1    2                                                            
CONECT    2    1    3                                                       
CONECT    3    2    4    5   14                                             
CONECT    4    3                                                            
CONECT    5    3    6                                                       
CONECT    6    5    7                                                       
CONECT    7    6    8   14                                                  
CONECT    8    7    9   11                                                  
CONECT    9    8   10                                                       
CONECT   10    9                                                            
CONECT   11    8   12   13                                                  
CONECT   12   11                                                            
CONECT   13   11                                                            
CONECT   14    7    3                                                       
MASTER        0    0    0    0    0    0    0    0   14    0   28    0
END

View in JSmol

Synonyms

Value	Source
(2S)-2-[(2R,5R)-5-Ethenyl-5-methyloxolan-2-yl]-3-hydroxypropanoate	Generator

Chemical Formula

C₁₀H₁₆O₄

Average Mass

200.2340 Da

Monoisotopic Mass

200.10486 Da

IUPAC Name

(2S)-2-[(2R,5R)-5-ethenyl-5-methyloxolan-2-yl]-3-hydroxypropanoic acid

Traditional Name

(2S)-2-[(2R,5R)-5-ethenyl-5-methyloxolan-2-yl]-3-hydroxypropanoic acid

CAS Registry Number

Not Available

SMILES

C[C@@]1(CC[C@@H](O1)[C@H](CO)C(O)=O)C=C

InChI Identifier

InChI=1S/C10H16O4/c1-3-10(2)5-4-8(14-10)7(6-11)9(12)13/h3,7-8,11H,1,4-6H2,2H3,(H,12,13)/t7-,8+,10-/m0/s1

InChI Key

WLRVIKRNZCNFRS-XKSSXDPKSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Acacia concinna	LOTUS Database	35616633

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as beta hydroxy acids and derivatives. Beta hydroxy acids and derivatives are compounds containing a carboxylic acid substituted with a hydroxyl group on the C3 carbon atom.

Kingdom

Organic compounds

Super Class

Organic acids and derivatives

Class

Hydroxy acids and derivatives

Sub Class

Beta hydroxy acids and derivatives

Direct Parent

Beta hydroxy acids and derivatives

Alternative Parents

Substituents

Beta-hydroxy acid
Tetrahydrofuran
Carboxylic acid derivative
Carboxylic acid
Dialkyl ether
Ether
Monocarboxylic acid or derivatives
Organoheterocyclic compound
Oxacycle
Carbonyl group
Alcohol
Organooxygen compound
Primary alcohol
Organic oxide
Organic oxygen compound
Hydrocarbon derivative
Aliphatic heteromonocyclic compound

Molecular Framework

Aliphatic heteromonocyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	0.64	ChemAxon
pKa (Strongest Acidic)	4.42	ChemAxon
pKa (Strongest Basic)	-2.7	ChemAxon
Physiological Charge	-1	ChemAxon
Hydrogen Acceptor Count	4	ChemAxon
Hydrogen Donor Count	2	ChemAxon
Polar Surface Area	66.76 Å²	ChemAxon
Rotatable Bond Count	4	ChemAxon
Refractivity	50.83 m³·mol⁻¹	ChemAxon
Polarizability	20.81 Å³	ChemAxon
Number of Rings	1	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	Yes	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

Not Available

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

162875437

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

LOTUS database [Link]

Showing NP-Card for (2s)-2-[(2r,5r)-5-ethenyl-5-methyloxolan-2-yl]-3-hydroxypropanoic acid (NP0207694)

MOL for NP0207694 ((2s)-2-[(2r,5r)-5-ethenyl-5-methyloxolan-2-yl]-3-hydroxypropanoic acid)

3D MOL for NP0207694 ((2s)-2-[(2r,5r)-5-ethenyl-5-methyloxolan-2-yl]-3-hydroxypropanoic acid)

3D SDF for NP0207694 ((2s)-2-[(2r,5r)-5-ethenyl-5-methyloxolan-2-yl]-3-hydroxypropanoic acid)

3D-SDF for NP0207694 ((2s)-2-[(2r,5r)-5-ethenyl-5-methyloxolan-2-yl]-3-hydroxypropanoic acid)

PDB for NP0207694 ((2s)-2-[(2r,5r)-5-ethenyl-5-methyloxolan-2-yl]-3-hydroxypropanoic acid)

3D PDB for NP0207694 ((2s)-2-[(2r,5r)-5-ethenyl-5-methyloxolan-2-yl]-3-hydroxypropanoic acid)

SMILES for NP0207694 ((2s)-2-[(2r,5r)-5-ethenyl-5-methyloxolan-2-yl]-3-hydroxypropanoic acid)

INCHI for NP0207694 ((2s)-2-[(2r,5r)-5-ethenyl-5-methyloxolan-2-yl]-3-hydroxypropanoic acid)

Structure for NP0207694 ((2s)-2-[(2r,5r)-5-ethenyl-5-methyloxolan-2-yl]-3-hydroxypropanoic acid)

3D Structure for NP0207694 ((2s)-2-[(2r,5r)-5-ethenyl-5-methyloxolan-2-yl]-3-hydroxypropanoic acid)