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Record Information
Version2.0
Created at2022-09-05 04:06:12 UTC
Updated at2022-09-05 04:06:13 UTC
NP-MRD IDNP0207474
Secondary Accession NumbersNone
Natural Product Identification
Common Name(1r,2s,5r,8r,9s,11s)-11-hydroxy-2,5,9-trimethyltricyclo[6.3.0.0¹,⁵]undec-3-ene-3-carboxylic acid
Description2Beta-hydroxysubergorgic acid, also known as 2β-hydroxysubergorgate, belongs to the class of organic compounds known as angular triquinanes. These are triquinane with a structure based on a [6.3.0.0^1,5] Undecane carbon skeleton. (1r,2s,5r,8r,9s,11s)-11-hydroxy-2,5,9-trimethyltricyclo[6.3.0.0¹,⁵]undec-3-ene-3-carboxylic acid is found in Subergorgia suberosa. (1r,2s,5r,8r,9s,11s)-11-hydroxy-2,5,9-trimethyltricyclo[6.3.0.0¹,⁵]undec-3-ene-3-carboxylic acid was first documented in 2002 (PMID: 12141868). Based on a literature review very few articles have been published on 2beta-hydroxysubergorgic acid.
Structure
Thumb
Synonyms
ValueSource
2b-HydroxysubergorgateGenerator
2b-Hydroxysubergorgic acidGenerator
2beta-HydroxysubergorgateGenerator
2Β-hydroxysubergorgateGenerator
2Β-hydroxysubergorgic acidGenerator
Chemical FormulaC15H22O3
Average Mass250.3380 Da
Monoisotopic Mass250.15689 Da
IUPAC Name(1R,2S,5R,8R,9S,11S)-11-hydroxy-2,5,9-trimethyltricyclo[6.3.0.0^{1,5}]undec-3-ene-3-carboxylic acid
Traditional Name(1R,2S,5R,8R,9S,11S)-11-hydroxy-2,5,9-trimethyltricyclo[6.3.0.0^{1,5}]undec-3-ene-3-carboxylic acid
CAS Registry NumberNot Available
SMILES
C[C@H]1C[C@H](O)[C@]23[C@H](C)C(=C[C@@]2(C)CC[C@H]13)C(O)=O
InChI Identifier
InChI=1S/C15H22O3/c1-8-6-12(16)15-9(2)10(13(17)18)7-14(15,3)5-4-11(8)15/h7-9,11-12,16H,4-6H2,1-3H3,(H,17,18)/t8-,9+,11+,12-,14+,15+/m0/s1
InChI KeyGRJIJCAVEARKHZ-PTHUINEESA-N
Experimental Spectra
Not Available
Predicted Spectra
Spectrum TypeDescriptionDepositor IDDepositor OrganizationDepositorDeposition DateView
1D NMR13C NMR Spectrum (1D, 25 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 100 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 252 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 1000 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 50 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 200 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 75 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 300 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 101 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 400 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 126 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 500 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 151 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 600 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 176 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 700 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 201 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 800 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 226 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 900 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
Chemical Shift Submissions
Not Available
Species
Species of Origin
Species NameSourceReference
Subergorgia suberosaLOTUS Database
Chemical Taxonomy
Description Belongs to the class of organic compounds known as angular triquinanes. These are triquinane with a structure based on a [6.3.0.0^1,5] Undecane carbon skeleton.
KingdomOrganic compounds
Super ClassLipids and lipid-like molecules
ClassPrenol lipids
Sub ClassSesquiterpenoids
Direct ParentAngular triquinanes
Alternative Parents
Substituents
  • Angular triquinane sesquiterpenoid
  • Cyclic alcohol
  • Secondary alcohol
  • Monocarboxylic acid or derivatives
  • Carboxylic acid
  • Carboxylic acid derivative
  • Organic oxygen compound
  • Organic oxide
  • Hydrocarbon derivative
  • Organooxygen compound
  • Carbonyl group
  • Alcohol
  • Aliphatic homopolycyclic compound
Molecular FrameworkAliphatic homopolycyclic compounds
External DescriptorsNot Available
Physical Properties
StateNot Available
Experimental Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Predicted Properties
PropertyValueSource
logP2.06ChemAxon
pKa (Strongest Acidic)4.77ChemAxon
pKa (Strongest Basic)-0.21ChemAxon
Physiological Charge-1ChemAxon
Hydrogen Acceptor Count3ChemAxon
Hydrogen Donor Count2ChemAxon
Polar Surface Area57.53 ŲChemAxon
Rotatable Bond Count1ChemAxon
Refractivity68.93 m³·mol⁻¹ChemAxon
Polarizability27.66 ųChemAxon
Number of Rings3ChemAxon
BioavailabilityYesChemAxon
Rule of FiveYesChemAxon
Ghose FilterYesChemAxon
Veber's RuleNoChemAxon
MDDR-like RuleNoChemAxon
HMDB IDNot Available
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FoodDB IDNot Available
KNApSAcK IDNot Available
Chemspider ID10146607
KEGG Compound IDNot Available
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem Compound11973251
PDB IDNot Available
ChEBI IDNot Available
Good Scents IDNot Available
References
General References
  1. Wang GH, Ahmed AF, Kuo YH, Sheu JH: Two new subergane-based sesquiterpenes from a Taiwanese Gorgonian coral Subergorgia suberosa. J Nat Prod. 2002 Jul;65(7):1033-6. doi: 10.1021/np0106586. [PubMed:12141868 ]
  2. LOTUS database [Link]