NP-MRD: Showing NP-Card for (12s,13s,14s)-18,19-dimethoxy-13,14-dimethyl-20-oxo-3,6,8-trioxapentacyclo[9.9.1.0¹,¹⁶.0⁴,²¹.0⁵,⁹]henicosa-4,9,11(21),16,18-pentaen-12-yl benzoate (NP0207300)

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Record Information

Version

2.0

Created at

2022-09-05 03:51:16 UTC

Updated at

2022-09-05 03:51:16 UTC

NP-MRD ID

NP0207300

Secondary Accession Numbers

None

Natural Product Identification

Common Name

(12s,13s,14s)-18,19-dimethoxy-13,14-dimethyl-20-oxo-3,6,8-trioxapentacyclo[9.9.1.0¹,¹⁶.0⁴,²¹.0⁵,⁹]henicosa-4,9,11(21),16,18-pentaen-12-yl benzoate

Description

Benzoyl oxokadsurane belongs to the class of organic compounds known as hydrolyzable tannins. These are tannins with a structure characterized by either of the following models. In model 1, the structure contains galloyl units (in some cases, shikimic acid units) that are linked to diverse polyol carbohydrate-, catechin-, or triterpenoid units. In model 2, contains at least two galloyl units C-C coupled to each other, and do not contain a glycosidically linked catechin unit. (12s,13s,14s)-18,19-dimethoxy-13,14-dimethyl-20-oxo-3,6,8-trioxapentacyclo[9.9.1.0¹,¹⁶.0⁴,²¹.0⁵,⁹]henicosa-4,9,11(21),16,18-pentaen-12-yl benzoate is found in Kadsura coccinea. Based on a literature review very few articles have been published on Benzoyl oxokadsurane.

Structure

MOL 3D MOL SDF PDB SMILES InChI


  Mrv1652309052205512D          

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M  END

     RDKit          3D

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M  END


  Mrv1652309052205512D          

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 24 25  2  0  0  0  0
 25 26  1  0  0  0  0
 26 27  2  0  0  0  0
 22 27  1  0  0  0  0
 18 28  1  0  0  0  0
 28 29  1  1  0  0  0
 28 30  1  0  0  0  0
 30 31  1  1  0  0  0
 30 32  1  0  0  0  0
 32 33  1  0  0  0  0
  9 33  1  0  0  0  0
 33 34  2  0  0  0  0
  3 34  1  0  0  0  0
 14 35  1  0  0  0  0
 35 36  1  0  0  0  0
 36 37  1  0  0  0  0
 13 37  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0207300

> <DATABASE_NAME>
NP-MRD

> <SMILES>
COC1=C(OC)C(=O)C23COC4=C5OCOC5=CC([C@@H](OC(=O)C5=CC=CC=C5)[C@@H](C)[C@@H](C)CC2=C1)=C34

> <INCHI_IDENTIFIER>
InChI=1S/C29H28O8/c1-15-10-18-11-20(32-3)25(33-4)27(30)29(18)13-34-26-22(29)19(12-21-24(26)36-14-35-21)23(16(15)2)37-28(31)17-8-6-5-7-9-17/h5-9,11-12,15-16,23H,10,13-14H2,1-4H3/t15-,16-,23-,29?/m0/s1

> <INCHI_KEY>
RMKQIKRRIGHWHR-UQDNXWCZSA-N

> <FORMULA>
C29H28O8

> <MOLECULAR_WEIGHT>
504.535

> <EXACT_MASS>
504.178417862

> <JCHEM_ACCEPTOR_COUNT>
7

> <JCHEM_ATOM_COUNT>
65

> <JCHEM_AVERAGE_POLARIZABILITY>
52.139754631691325

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
0

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
(12S,13S,14S)-18,19-dimethoxy-13,14-dimethyl-20-oxo-3,6,8-trioxapentacyclo[9.9.1.0^{1,16}.0^{4,21}.0^{5,9}]henicosa-4,9,11(21),16,18-pentaen-12-yl benzoate

> <JCHEM_LOGP>
4.195093755666667

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
6

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA_STRONGEST_BASIC>
-4.291846587829674

> <JCHEM_POLAR_SURFACE_AREA>
89.52000000000001

> <JCHEM_REFRACTIVITY>
135.81410000000002

> <JCHEM_ROTATABLE_BOND_COUNT>
5

> <JCHEM_RULE_OF_FIVE>
0

> <JCHEM_TRADITIONAL_IUPAC>
(12S,13S,14S)-18,19-dimethoxy-13,14-dimethyl-20-oxo-3,6,8-trioxapentacyclo[9.9.1.0^{1,16}.0^{4,21}.0^{5,9}]henicosa-4,9,11(21),16,18-pentaen-12-yl benzoate

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 05-SEP-22   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   05-SEP-22         0                                  
HETATM    1  C   UNK     0      -1.758  -2.577   0.000  0.00  0.00           C+0
HETATM    2  O   UNK     0      -0.673  -1.485   0.000  0.00  0.00           O+0
HETATM    3  C   UNK     0       0.816  -1.878   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0       1.976  -0.781   0.000  0.00  0.00           C+0
HETATM    5  O   UNK     0       2.173   0.746   0.000  0.00  0.00           O+0
HETATM    6  C   UNK     0       0.949   1.680   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0       2.840  -2.170   0.000  0.00  0.00           C+0
HETATM    8  O   UNK     0       2.005  -3.463   0.000  0.00  0.00           O+0
HETATM    9  C   UNK     0       4.086  -3.357   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0       4.023  -1.818   0.000  0.00  0.00           C+0
HETATM   11  O   UNK     0       5.467  -1.283   0.000  0.00  0.00           O+0
HETATM   12  C   UNK     0       6.354  -2.447   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0       7.894  -2.464   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0       8.649  -3.806   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0       7.864  -5.132   0.000  0.00  0.00           C+0
HETATM   16  C   UNK     0       6.325  -5.114   0.000  0.00  0.00           C+0
HETATM   17  C   UNK     0       5.569  -3.772   0.000  0.00  0.00           C+0
HETATM   18  C   UNK     0       5.909  -6.597   0.000  0.00  0.00           C+0
HETATM   19  O   UNK     0       7.121  -7.548   0.000  0.00  0.00           O+0
HETATM   20  C   UNK     0       6.903  -9.073   0.000  0.00  0.00           C+0
HETATM   21  O   UNK     0       5.474  -9.646   0.000  0.00  0.00           O+0
HETATM   22  C   UNK     0       8.114 -10.024   0.000  0.00  0.00           C+0
HETATM   23  C   UNK     0       9.543  -9.450   0.000  0.00  0.00           C+0
HETATM   24  C   UNK     0      10.755 -10.401   0.000  0.00  0.00           C+0
HETATM   25  C   UNK     0      10.537 -11.926   0.000  0.00  0.00           C+0
HETATM   26  C   UNK     0       9.107 -12.499   0.000  0.00  0.00           C+0
HETATM   27  C   UNK     0       7.896 -11.548   0.000  0.00  0.00           C+0
HETATM   28  C   UNK     0       4.567  -7.353   0.000  0.00  0.00           C+0
HETATM   29  C   UNK     0       4.751  -8.881   0.000  0.00  0.00           C+0
HETATM   30  C   UNK     0       3.084  -6.937   0.000  0.00  0.00           C+0
HETATM   31  C   UNK     0       2.133  -8.149   0.000  0.00  0.00           C+0
HETATM   32  C   UNK     0       2.329  -5.595   0.000  0.00  0.00           C+0
HETATM   33  C   UNK     0       2.744  -4.112   0.000  0.00  0.00           C+0
HETATM   34  C   UNK     0       1.280  -3.395   0.000  0.00  0.00           C+0
HETATM   35  O   UNK     0      10.159  -3.503   0.000  0.00  0.00           O+0
HETATM   36  C   UNK     0      10.337  -1.973   0.000  0.00  0.00           C+0
HETATM   37  O   UNK     0       8.937  -1.331   0.000  0.00  0.00           O+0
CONECT    1    2                                                            
CONECT    2    1    3                                                       
CONECT    3    2    4   34                                                  
CONECT    4    3    5    7                                                  
CONECT    5    4    6                                                       
CONECT    6    5                                                            
CONECT    7    4    8    9                                                  
CONECT    8    7                                                            
CONECT    9    7   10   17   33                                             
CONECT   10    9   11                                                       
CONECT   11   10   12                                                       
CONECT   12   11   13   17                                                  
CONECT   13   12   14   37                                                  
CONECT   14   13   15   35                                                  
CONECT   15   14   16                                                       
CONECT   16   15   17   18                                                  
CONECT   17   16   12    9                                                  
CONECT   18   16   19   28                                                  
CONECT   19   18   20                                                       
CONECT   20   19   21   22                                                  
CONECT   21   20                                                            
CONECT   22   20   23   27                                                  
CONECT   23   22   24                                                       
CONECT   24   23   25                                                       
CONECT   25   24   26                                                       
CONECT   26   25   27                                                       
CONECT   27   26   22                                                       
CONECT   28   18   29   30                                                  
CONECT   29   28                                                            
CONECT   30   28   31   32                                                  
CONECT   31   30                                                            
CONECT   32   30   33                                                       
CONECT   33   32    9   34                                                  
CONECT   34   33    3                                                       
CONECT   35   14   36                                                       
CONECT   36   35   37                                                       
CONECT   37   36   13                                                       
MASTER        0    0    0    0    0    0    0    0   37    0   84    0
END

View in JSmol

Synonyms

Not Available

Chemical Formula

C₂₉H₂₈O₈

Average Mass

504.5350 Da

Monoisotopic Mass

504.17842 Da

IUPAC Name

(12S,13S,14S)-18,19-dimethoxy-13,14-dimethyl-20-oxo-3,6,8-trioxapentacyclo[9.9.1.0^{1,16}.0^{4,21}.0^{5,9}]henicosa-4,9,11(21),16,18-pentaen-12-yl benzoate

Traditional Name

(12S,13S,14S)-18,19-dimethoxy-13,14-dimethyl-20-oxo-3,6,8-trioxapentacyclo[9.9.1.0^{1,16}.0^{4,21}.0^{5,9}]henicosa-4,9,11(21),16,18-pentaen-12-yl benzoate

CAS Registry Number

Not Available

SMILES

COC1=C(OC)C(=O)C23COC4=C5OCOC5=CC([C@@H](OC(=O)C5=CC=CC=C5)[C@@H](C)[C@@H](C)CC2=C1)=C34

InChI Identifier

InChI=1S/C29H28O8/c1-15-10-18-11-20(32-3)25(33-4)27(30)29(18)13-34-26-22(29)19(12-21-24(26)36-14-35-21)23(16(15)2)37-28(31)17-8-6-5-7-9-17/h5-9,11-12,15-16,23H,10,13-14H2,1-4H3/t15-,16-,23-,29?/m0/s1

InChI Key

RMKQIKRRIGHWHR-UQDNXWCZSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Kadsura coccinea	LOTUS Database	35616633

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as hydrolyzable tannins. These are tannins with a structure characterized by either of the following models. In model 1, the structure contains galloyl units (in some cases, shikimic acid units) that are linked to diverse polyol carbohydrate-, catechin-, or triterpenoid units. In model 2, contains at least two galloyl units C-C coupled to each other, and do not contain a glycosidically linked catechin unit.

Kingdom

Organic compounds

Super Class

Phenylpropanoids and polyketides

Class

Tannins

Sub Class

Hydrolyzable tannins

Direct Parent

Hydrolyzable tannins

Alternative Parents

Substituents

Hydrolyzable tannin
Benzoate ester
Coumaran
Benzodioxole
Benzoic acid or derivatives
Benzoyl
Alkyl aryl ether
Monocyclic benzene moiety
Benzenoid
Vinylogous ester
Ketone
Carboxylic acid ester
Ether
Carboxylic acid derivative
Acetal
Organoheterocyclic compound
Oxacycle
Monocarboxylic acid or derivatives
Organooxygen compound
Carbonyl group
Hydrocarbon derivative
Organic oxide
Organic oxygen compound
Aldehyde
Aromatic heteropolycyclic compound

Molecular Framework

Aromatic heteropolycyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	4.2	ChemAxon
pKa (Strongest Basic)	-4.3	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	7	ChemAxon
Hydrogen Donor Count	0	ChemAxon
Polar Surface Area	89.52 Å²	ChemAxon
Rotatable Bond Count	5	ChemAxon
Refractivity	135.81 m³·mol⁻¹	ChemAxon
Polarizability	52.14 Å³	ChemAxon
Number of Rings	6	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	No	ChemAxon
Ghose Filter	No	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

34553634

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

49770141

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

LOTUS database [Link]

Showing NP-Card for (12s,13s,14s)-18,19-dimethoxy-13,14-dimethyl-20-oxo-3,6,8-trioxapentacyclo[9.9.1.0¹,¹⁶.0⁴,²¹.0⁵,⁹]henicosa-4,9,11(21),16,18-pentaen-12-yl benzoate (NP0207300)

MOL for NP0207300 ((12s,13s,14s)-18,19-dimethoxy-13,14-dimethyl-20-oxo-3,6,8-trioxapentacyclo[9.9.1.0¹,¹⁶.0⁴,²¹.0⁵,⁹]henicosa-4,9,11(21),16,18-pentaen-12-yl benzoate)

3D MOL for NP0207300 ((12s,13s,14s)-18,19-dimethoxy-13,14-dimethyl-20-oxo-3,6,8-trioxapentacyclo[9.9.1.0¹,¹⁶.0⁴,²¹.0⁵,⁹]henicosa-4,9,11(21),16,18-pentaen-12-yl benzoate)

3D SDF for NP0207300 ((12s,13s,14s)-18,19-dimethoxy-13,14-dimethyl-20-oxo-3,6,8-trioxapentacyclo[9.9.1.0¹,¹⁶.0⁴,²¹.0⁵,⁹]henicosa-4,9,11(21),16,18-pentaen-12-yl benzoate)

3D-SDF for NP0207300 ((12s,13s,14s)-18,19-dimethoxy-13,14-dimethyl-20-oxo-3,6,8-trioxapentacyclo[9.9.1.0¹,¹⁶.0⁴,²¹.0⁵,⁹]henicosa-4,9,11(21),16,18-pentaen-12-yl benzoate)

PDB for NP0207300 ((12s,13s,14s)-18,19-dimethoxy-13,14-dimethyl-20-oxo-3,6,8-trioxapentacyclo[9.9.1.0¹,¹⁶.0⁴,²¹.0⁵,⁹]henicosa-4,9,11(21),16,18-pentaen-12-yl benzoate)

3D PDB for NP0207300 ((12s,13s,14s)-18,19-dimethoxy-13,14-dimethyl-20-oxo-3,6,8-trioxapentacyclo[9.9.1.0¹,¹⁶.0⁴,²¹.0⁵,⁹]henicosa-4,9,11(21),16,18-pentaen-12-yl benzoate)

SMILES for NP0207300 ((12s,13s,14s)-18,19-dimethoxy-13,14-dimethyl-20-oxo-3,6,8-trioxapentacyclo[9.9.1.0¹,¹⁶.0⁴,²¹.0⁵,⁹]henicosa-4,9,11(21),16,18-pentaen-12-yl benzoate)

INCHI for NP0207300 ((12s,13s,14s)-18,19-dimethoxy-13,14-dimethyl-20-oxo-3,6,8-trioxapentacyclo[9.9.1.0¹,¹⁶.0⁴,²¹.0⁵,⁹]henicosa-4,9,11(21),16,18-pentaen-12-yl benzoate)

Structure for NP0207300 ((12s,13s,14s)-18,19-dimethoxy-13,14-dimethyl-20-oxo-3,6,8-trioxapentacyclo[9.9.1.0¹,¹⁶.0⁴,²¹.0⁵,⁹]henicosa-4,9,11(21),16,18-pentaen-12-yl benzoate)

3D Structure for NP0207300 ((12s,13s,14s)-18,19-dimethoxy-13,14-dimethyl-20-oxo-3,6,8-trioxapentacyclo[9.9.1.0¹,¹⁶.0⁴,²¹.0⁵,⁹]henicosa-4,9,11(21),16,18-pentaen-12-yl benzoate)