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Record Information
Version2.0
Created at2022-09-05 03:33:40 UTC
Updated at2022-09-05 03:33:40 UTC
NP-MRD IDNP0207084
Secondary Accession NumbersNone
Natural Product Identification
Common Name(1s,3r,4r,8s,10r,11r)-13-[(4e)-hex-4-enoyl]-3,10,12-trihydroxy-6-[(2e,4e)-1-hydroxyhexa-2,4-dien-1-ylidene]-1,4,8,11-tetramethyl-2,9-dioxapentacyclo[8.4.0.0³,⁸.0⁴,¹⁴.0⁷,¹¹]tetradec-12-en-5-one
DescriptionDihydrotrichodimerol belongs to the class of organic compounds known as oxepanes. Oxepanes are compounds containing an oxepane ring, which is a seven-member saturated aliphatic heterocycle with one oxygen and six carbon atoms. (1s,3r,4r,8s,10r,11r)-13-[(4e)-hex-4-enoyl]-3,10,12-trihydroxy-6-[(2e,4e)-1-hydroxyhexa-2,4-dien-1-ylidene]-1,4,8,11-tetramethyl-2,9-dioxapentacyclo[8.4.0.0³,⁸.0⁴,¹⁴.0⁷,¹¹]tetradec-12-en-5-one is found in Penicillium terrestre. (1s,3r,4r,8s,10r,11r)-13-[(4e)-hex-4-enoyl]-3,10,12-trihydroxy-6-[(2e,4e)-1-hydroxyhexa-2,4-dien-1-ylidene]-1,4,8,11-tetramethyl-2,9-dioxapentacyclo[8.4.0.0³,⁸.0⁴,¹⁴.0⁷,¹¹]tetradec-12-en-5-one was first documented in 2005 (PMID: 16392677). Based on a literature review a significant number of articles have been published on dihydrotrichodimerol (PMID: 30663360) (PMID: 26341482) (PMID: 20415482) (PMID: 19418099) (PMID: 16392676).
Structure
Thumb
Synonyms
ValueSource
TetrahydrotrichodimerolMeSH
Chemical FormulaC28H34O8
Average Mass498.5720 Da
Monoisotopic Mass498.22537 Da
IUPAC Name(1S,3R,4R,8S,10R,11R)-13-[(4E)-hex-4-enoyl]-3,10,12-trihydroxy-6-[(2E,4E)-1-hydroxyhexa-2,4-dien-1-ylidene]-1,4,8,11-tetramethyl-2,9-dioxapentacyclo[8.4.0.0^{3,8}.0^{4,14}.0^{7,11}]tetradec-12-en-5-one
Traditional Name(1S,3R,4R,8S,10R,11R)-13-[(4E)-hex-4-enoyl]-3,10,12-trihydroxy-6-[(2E,4E)-1-hydroxyhexa-2,4-dien-1-ylidene]-1,4,8,11-tetramethyl-2,9-dioxapentacyclo[8.4.0.0^{3,8}.0^{4,14}.0^{7,11}]tetradec-12-en-5-one
CAS Registry NumberNot Available
SMILES
C\C=C\CCC(=O)C1=C(O)[C@@]2(C)C3C(=C(O)\C=C\C=C\C)C(=O)[C@@]4(C)C1[C@]1(C)O[C@@]4(O)[C@@]3(C)O[C@]21O
InChI Identifier
InChI=1S/C28H34O8/c1-7-9-11-13-15(29)17-19-23(3)22(32)18(16(30)14-12-10-8-2)20-24(4,21(17)31)28(34)25(19,5)35-27(23,33)26(20,6)36-28/h7-11,13,19-20,29,32-34H,12,14H2,1-6H3/b9-7+,10-8+,13-11+,17-15?/t19?,20?,23-,24-,25+,26+,27-,28-/m1/s1
InChI KeyVXNANBMCYPZBSM-VPIXFZJBSA-N
Experimental Spectra
Not Available
Predicted Spectra
Spectrum TypeDescriptionDepositor IDDepositor OrganizationDepositorDeposition DateView
1D NMR13C NMR Spectrum (1D, 25 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 100 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 252 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 1000 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 50 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 200 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 75 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 300 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 101 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 400 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 126 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 500 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 151 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 600 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 176 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 700 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 201 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 800 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 226 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 900 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
Chemical Shift Submissions
Not Available
Species
Species of Origin
Species NameSourceReference
Penicillium terrestreLOTUS Database
Chemical Taxonomy
Description Belongs to the class of organic compounds known as oxepanes. Oxepanes are compounds containing an oxepane ring, which is a seven-member saturated aliphatic heterocycle with one oxygen and six carbon atoms.
KingdomOrganic compounds
Super ClassOrganoheterocyclic compounds
ClassOxepanes
Sub ClassNot Available
Direct ParentOxepanes
Alternative Parents
Substituents
  • Oxepane
  • Para-dioxane
  • Vinylogous acid
  • Tetrahydrofuran
  • Cyclic alcohol
  • Ketone
  • Hemiacetal
  • Oxacycle
  • Polyol
  • Enol
  • Organic oxygen compound
  • Organic oxide
  • Hydrocarbon derivative
  • Organooxygen compound
  • Carbonyl group
  • Aliphatic heteropolycyclic compound
Molecular FrameworkAliphatic heteropolycyclic compounds
External DescriptorsNot Available
Physical Properties
StateNot Available
Experimental Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Predicted Properties
PropertyValueSource
logP3.39ChemAxon
pKa (Strongest Acidic)8.95ChemAxon
pKa (Strongest Basic)-4.1ChemAxon
Physiological Charge0ChemAxon
Hydrogen Acceptor Count8ChemAxon
Hydrogen Donor Count4ChemAxon
Polar Surface Area133.52 ŲChemAxon
Rotatable Bond Count6ChemAxon
Refractivity136.52 m³·mol⁻¹ChemAxon
Polarizability52.05 ųChemAxon
Number of Rings5ChemAxon
BioavailabilityYesChemAxon
Rule of FiveYesChemAxon
Ghose FilterNoChemAxon
Veber's RuleNoChemAxon
MDDR-like RuleYesChemAxon
HMDB IDNot Available
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FoodDB IDNot Available
KNApSAcK IDNot Available
Chemspider IDNot Available
KEGG Compound IDNot Available
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem Compound139587822
PDB IDNot Available
ChEBI IDNot Available
Good Scents IDNot Available
References
General References
  1. Liu W, Gu Q, Zhu W, Cui C, Fan G: Dihydrotrichodimerol and tetrahydrotrichodimerol, two new bisorbicillinoids, from a marine-derived Penicillium terrestre. J Antibiot (Tokyo). 2005 Oct;58(10):621-4. doi: 10.1038/ja.2005.85. [PubMed:16392677 ]
  2. Peng XP, Li G, Ji LX, Li YX, Lou HX: Acrepyrone A, a new gamma-pyrone derivative from an endophytic fungus, Acremonium citrinum SS-g13. Nat Prod Res. 2020 Apr;34(8):1091-1096. doi: 10.1080/14786419.2018.1548462. Epub 2019 Jan 19. [PubMed:30663360 ]
  3. Nirlane da Costa Souza P, Luiza Bim Grigoletto T, Alberto Beraldo de Moraes L, Abreu LM, Henrique Souza Guimaraes L, Santos C, Ribeiro Galvao L, Gomes Cardoso P: Production and chemical characterization of pigments in filamentous fungi. Microbiology (Reading). 2016 Jan;162(1):12-22. doi: 10.1099/mic.0.000168. Epub 2015 Sep 3. [PubMed:26341482 ]
  4. Balde ES, Andolfi A, Bruyere C, Cimmino A, Lamoral-Theys D, Vurro M, Damme MV, Altomare C, Mathieu V, Kiss R, Evidente A: Investigations of fungal secondary metabolites with potential anticancer activity. J Nat Prod. 2010 May 28;73(5):969-71. doi: 10.1021/np900731p. [PubMed:20415482 ]
  5. Evidente A, Andolfi A, Cimmino A, Ganassi S, Altomare C, Favilla M, De Cristofaro A, Vitagliano S, Agnese Sabatini M: Bisorbicillinoids produced by the fungus Trichoderma citrinoviride affect feeding preference of the aphid Schizaphis graminum. J Chem Ecol. 2009 May;35(5):533-41. doi: 10.1007/s10886-009-9632-6. Epub 2009 May 6. [PubMed:19418099 ]
  6. Lee D, Lee JH, Cai XF, Shin JC, Lee K, Hong YS, Lee JJ: Fungal metabolites, sorbicillinoid polyketides and their effects on the activation of peroxisome proliferator-activated receptor gamma. J Antibiot (Tokyo). 2005 Oct;58(10):615-20. doi: 10.1038/ja.2005.84. [PubMed:16392676 ]
  7. LOTUS database [Link]