NP-MRD: Showing NP-Card for (2r,3r)-7-hydroxy-2,3-bis(hydroxymethyl)-6-methoxy-3,4-dihydro-2h-naphthalen-1-one (NP0206570)

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Record Information

Version

2.0

Created at

2022-09-05 02:51:40 UTC

Updated at

2022-09-05 02:51:41 UTC

NP-MRD ID

NP0206570

Secondary Accession Numbers

None

Natural Product Identification

Common Name

(2r,3r)-7-hydroxy-2,3-bis(hydroxymethyl)-6-methoxy-3,4-dihydro-2h-naphthalen-1-one

Description

2,3-Bis(hydroxymethyl)-7-hydroxy-6-methoxy-1-tetralone belongs to the class of organic compounds known as tetralins. These are polycyclic aromatic compounds containing a tetralin moiety, which consists of a benzene fused to a cyclohexane. 2,3-Bis(hydroxymethyl)-7-hydroxy-6-methoxy-1-tetralone is a secondary metabolite. Secondary metabolites are metabolically or physiologically non-essential metabolites that may serve a role as defense or signalling molecules. In some cases they are simply molecules that arise from the incomplete metabolism of other secondary metabolites. (2r,3r)-7-hydroxy-2,3-bis(hydroxymethyl)-6-methoxy-3,4-dihydro-2h-naphthalen-1-one is found in Taxus wallichiana. (2r,3r)-7-hydroxy-2,3-bis(hydroxymethyl)-6-methoxy-3,4-dihydro-2h-naphthalen-1-one was first documented in 2011 (PMID: 21138310). Based on a literature review very few articles have been published on 2,3-bis(hydroxymethyl)-7-hydroxy-6-methoxy-1-tetralone.

Structure

MOL 3D MOL SDF PDB SMILES InChI

     RDKit          3D

 34 35  0  0  0  0  0  0  0  0999 V2000
    4.6852   -1.3401   -0.6284 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.2903   -0.0112   -0.4058 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.9735    0.3056   -0.1031 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.9813   -0.6473   -0.0025 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7115   -0.2519    0.2990 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.3811    1.0718    0.5079 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.3589    2.0327    0.4111 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.6406    1.6425    0.1078 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.6452    2.5942    0.0044 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0080    1.3787    0.8242 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2344    2.4460    1.4902 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1337    0.5025    0.4011 C   0  0  1  0  0  0  0  0  0  0  0  0
   -3.0946    1.3490   -0.3810 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.1972    0.6727   -0.8434 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5473   -0.6236   -0.4026 C   0  0  2  0  0  0  0  0  0  0  0  0
   -2.5304   -1.7153   -0.7124 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.0137   -2.2621    0.4955 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4301   -1.2225    0.4284 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.1946   -2.0061    0.1306 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.4400   -1.6100   -1.6619 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.7873   -1.3824   -0.4322 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.1997   -1.6820   -0.1576 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.0640    3.0612    0.5812 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.4523    3.5603    0.1471 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.6600    0.0659    1.2771 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.4390    2.1630    0.2936 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.5667    1.8245   -1.2340 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.7028    0.3371   -0.0594 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1766   -0.2080   -1.3587 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.3327   -1.4281   -1.3938 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9653   -2.5378   -1.1982 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.9005   -2.6710    0.3340 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7187   -1.1738    1.5137 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1536   -2.2347    0.1264 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  3  4  2  0
  4  5  1  0
  5  6  2  0
  6  7  1  0
  7  8  2  0
  8  9  1  0
  6 10  1  0
 10 11  2  0
 10 12  1  0
 12 13  1  0
 13 14  1  0
 12 15  1  0
 15 16  1  0
 16 17  1  0
 15 18  1  0
  8  3  1  0
 18  5  1  0
  1 19  1  0
  1 20  1  0
  1 21  1  0
  4 22  1  0
  7 23  1  0
  9 24  1  0
 12 25  1  1
 13 26  1  0
 13 27  1  0
 14 28  1  0
 15 29  1  6
 16 30  1  0
 16 31  1  0
 17 32  1  0
 18 33  1  0
 18 34  1  0
M  END


  Mrv1652309052204512D          

 18 19  0  0  1  0            999 V2000
   -2.1434   -1.2375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4289   -1.6500    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7145   -1.2375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0000   -1.6500    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7145   -1.2375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7145   -0.4125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0000   -0.0000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7145   -0.4125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4289    0.0000    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.4289   -0.0000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4289    0.8250    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.1434   -0.4125    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    2.8579   -0.0000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.8579    0.8250    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.1434   -1.2375    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    2.8579   -1.6500    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.8579   -2.4750    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.4289   -1.6500    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  1  0  0  0  0
  3  4  2  0  0  0  0
  4  5  1  0  0  0  0
  5  6  2  0  0  0  0
  6  7  1  0  0  0  0
  7  8  2  0  0  0  0
  3  8  1  0  0  0  0
  8  9  1  0  0  0  0
  6 10  1  0  0  0  0
 10 11  2  0  0  0  0
 10 12  1  0  0  0  0
 12 13  1  1  0  0  0
 13 14  1  0  0  0  0
 12 15  1  0  0  0  0
 15 16  1  6  0  0  0
 16 17  1  0  0  0  0
 15 18  1  0  0  0  0
  5 18  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0206570

> <DATABASE_NAME>
NP-MRD

> <SMILES>
COC1=CC2=C(C=C1O)C(=O)[C@@H](CO)[C@H](CO)C2

> <INCHI_IDENTIFIER>
InChI=1S/C13H16O5/c1-18-12-3-7-2-8(5-14)10(6-15)13(17)9(7)4-11(12)16/h3-4,8,10,14-16H,2,5-6H2,1H3/t8-,10-/m0/s1

> <INCHI_KEY>
WNTGJRDWTGWZJM-WPRPVWTQSA-N

> <FORMULA>
C13H16O5

> <MOLECULAR_WEIGHT>
252.266

> <EXACT_MASS>
252.099773615

> <JCHEM_ACCEPTOR_COUNT>
5

> <JCHEM_ATOM_COUNT>
34

> <JCHEM_AVERAGE_POLARIZABILITY>
26.20085464012674

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
3

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
1

> <JCHEM_IUPAC>
(2R,3R)-7-hydroxy-2,3-bis(hydroxymethyl)-6-methoxy-1,2,3,4-tetrahydronaphthalen-1-one

> <JCHEM_LOGP>
0.010397412333333217

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
2

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA>
14.53566082780572

> <JCHEM_PKA_STRONGEST_ACIDIC>
9.32260849734675

> <JCHEM_PKA_STRONGEST_BASIC>
-2.6104588467872993

> <JCHEM_POLAR_SURFACE_AREA>
86.99000000000001

> <JCHEM_REFRACTIVITY>
65.5203

> <JCHEM_ROTATABLE_BOND_COUNT>
3

> <JCHEM_RULE_OF_FIVE>
1

> <JCHEM_TRADITIONAL_IUPAC>
(2R,3R)-7-hydroxy-2,3-bis(hydroxymethyl)-6-methoxy-3,4-dihydro-2H-naphthalen-1-one

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 05-SEP-22   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   05-SEP-22         0                                  
HETATM    1  C   UNK     0      -4.001  -2.310   0.000  0.00  0.00           C+0
HETATM    2  O   UNK     0      -2.667  -3.080   0.000  0.00  0.00           O+0
HETATM    3  C   UNK     0      -1.334  -2.310   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0       0.000  -3.080   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0       1.334  -2.310   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0       1.334  -0.770   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0       0.000  -0.000   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0      -1.334  -0.770   0.000  0.00  0.00           C+0
HETATM    9  O   UNK     0      -2.667   0.000   0.000  0.00  0.00           O+0
HETATM   10  C   UNK     0       2.667  -0.000   0.000  0.00  0.00           C+0
HETATM   11  O   UNK     0       2.667   1.540   0.000  0.00  0.00           O+0
HETATM   12  C   UNK     0       4.001  -0.770   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0       5.335  -0.000   0.000  0.00  0.00           C+0
HETATM   14  O   UNK     0       5.335   1.540   0.000  0.00  0.00           O+0
HETATM   15  C   UNK     0       4.001  -2.310   0.000  0.00  0.00           C+0
HETATM   16  C   UNK     0       5.335  -3.080   0.000  0.00  0.00           C+0
HETATM   17  O   UNK     0       5.335  -4.620   0.000  0.00  0.00           O+0
HETATM   18  C   UNK     0       2.667  -3.080   0.000  0.00  0.00           C+0
CONECT    1    2                                                            
CONECT    2    1    3                                                       
CONECT    3    2    4    8                                                  
CONECT    4    3    5                                                       
CONECT    5    4    6   18                                                  
CONECT    6    5    7   10                                                  
CONECT    7    6    8                                                       
CONECT    8    7    3    9                                                  
CONECT    9    8                                                            
CONECT   10    6   11   12                                                  
CONECT   11   10                                                            
CONECT   12   10   13   15                                                  
CONECT   13   12   14                                                       
CONECT   14   13                                                            
CONECT   15   12   16   18                                                  
CONECT   16   15   17                                                       
CONECT   17   16                                                            
CONECT   18   15    5                                                       
MASTER        0    0    0    0    0    0    0    0   18    0   38    0
END

View in JSmol

Synonyms

Not Available

Chemical Formula

C₁₃H₁₆O₅

Average Mass

252.2660 Da

Monoisotopic Mass

252.09977 Da

IUPAC Name

(2R,3R)-7-hydroxy-2,3-bis(hydroxymethyl)-6-methoxy-1,2,3,4-tetrahydronaphthalen-1-one

Traditional Name

(2R,3R)-7-hydroxy-2,3-bis(hydroxymethyl)-6-methoxy-3,4-dihydro-2H-naphthalen-1-one

CAS Registry Number

Not Available

SMILES

COC1=CC2=C(C=C1O)C(=O)[C@@H](CO)[C@H](CO)C2

InChI Identifier

InChI=1S/C13H16O5/c1-18-12-3-7-2-8(5-14)10(6-15)13(17)9(7)4-11(12)16/h3-4,8,10,14-16H,2,5-6H2,1H3/t8-,10-/m0/s1

InChI Key

WNTGJRDWTGWZJM-WPRPVWTQSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Taxus wallichiana	LOTUS Database	35616633

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as tetralins. These are polycyclic aromatic compounds containing a tetralin moiety, which consists of a benzene fused to a cyclohexane.

Kingdom

Organic compounds

Super Class

Benzenoids

Class

Tetralins

Sub Class

Not Available

Direct Parent

Tetralins

Alternative Parents

Substituents

Tetralin
Aryl alkyl ketone
Aryl ketone
Anisole
1-hydroxy-2-unsubstituted benzenoid
Alkyl aryl ether
Ketone
Ether
Organic oxygen compound
Organic oxide
Hydrocarbon derivative
Primary alcohol
Organooxygen compound
Alcohol
Aromatic homopolycyclic compound

Molecular Framework

Aromatic homopolycyclic compounds

External Descriptors

cyclic ketone (CHEBI:70192 )
aromatic ether (CHEBI:70192 )
phenols (CHEBI:70192 )
primary alcohol (CHEBI:70192 )
triol (CHEBI:70192 )
tetralins (CHEBI:70192 )

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	0.01	ChemAxon
pKa (Strongest Acidic)	9.32	ChemAxon
pKa (Strongest Basic)	-2.6	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	5	ChemAxon
Hydrogen Donor Count	3	ChemAxon
Polar Surface Area	86.99 Å²	ChemAxon
Rotatable Bond Count	3	ChemAxon
Refractivity	65.52 m³·mol⁻¹	ChemAxon
Polarizability	26.2 Å³	ChemAxon
Number of Rings	2	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	Yes	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

26384422

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

50993828

PDB ID

Not Available

ChEBI ID

70192

Good Scents ID

Not Available

References

General References

Tezuka Y, Morikawa K, Li F, Auw L, Awale S, Nobukawa T, Kadota S: Cytochrome P450 3A4 inhibitory constituents of the wood of Taxus yunnanensis. J Nat Prod. 2011 Jan 28;74(1):102-5. doi: 10.1021/np100665j. Epub 2010 Dec 7. [PubMed:21138310 ]
LOTUS database [Link]

Showing NP-Card for (2r,3r)-7-hydroxy-2,3-bis(hydroxymethyl)-6-methoxy-3,4-dihydro-2h-naphthalen-1-one (NP0206570)

MOL for NP0206570 ((2r,3r)-7-hydroxy-2,3-bis(hydroxymethyl)-6-methoxy-3,4-dihydro-2h-naphthalen-1-one)

3D MOL for NP0206570 ((2r,3r)-7-hydroxy-2,3-bis(hydroxymethyl)-6-methoxy-3,4-dihydro-2h-naphthalen-1-one)

3D SDF for NP0206570 ((2r,3r)-7-hydroxy-2,3-bis(hydroxymethyl)-6-methoxy-3,4-dihydro-2h-naphthalen-1-one)

3D-SDF for NP0206570 ((2r,3r)-7-hydroxy-2,3-bis(hydroxymethyl)-6-methoxy-3,4-dihydro-2h-naphthalen-1-one)

PDB for NP0206570 ((2r,3r)-7-hydroxy-2,3-bis(hydroxymethyl)-6-methoxy-3,4-dihydro-2h-naphthalen-1-one)

3D PDB for NP0206570 ((2r,3r)-7-hydroxy-2,3-bis(hydroxymethyl)-6-methoxy-3,4-dihydro-2h-naphthalen-1-one)

SMILES for NP0206570 ((2r,3r)-7-hydroxy-2,3-bis(hydroxymethyl)-6-methoxy-3,4-dihydro-2h-naphthalen-1-one)

INCHI for NP0206570 ((2r,3r)-7-hydroxy-2,3-bis(hydroxymethyl)-6-methoxy-3,4-dihydro-2h-naphthalen-1-one)

Structure for NP0206570 ((2r,3r)-7-hydroxy-2,3-bis(hydroxymethyl)-6-methoxy-3,4-dihydro-2h-naphthalen-1-one)

3D Structure for NP0206570 ((2r,3r)-7-hydroxy-2,3-bis(hydroxymethyl)-6-methoxy-3,4-dihydro-2h-naphthalen-1-one)