NP-MRD: Showing NP-Card for (2r,3s)-2-(2h-1,3-benzodioxol-5-ylmethyl)-4-(3,4-dimethoxyphenyl)-3-methylbutan-1-ol (NP0206446)

Jump To Section:

Identification Spectra BioTaxonomy ChemoTaxonomy Physical properties Links References XML

Record Information

Version

2.0

Created at

2022-09-05 02:42:02 UTC

Updated at

2022-09-05 02:42:02 UTC

NP-MRD ID

NP0206446

Secondary Accession Numbers

None

Natural Product Identification

Common Name

(2r,3s)-2-(2h-1,3-benzodioxol-5-ylmethyl)-4-(3,4-dimethoxyphenyl)-3-methylbutan-1-ol

Description

(2R,3S)-2-[(2H-1,3-benzodioxol-5-yl)methyl]-4-(3,4-dimethoxyphenyl)-3-methylbutan-1-ol belongs to the class of organic compounds known as dibenzylbutane lignans. These are lignan compounds containing a 2,3-dibenzylbutane moiety. Based on a literature review very few articles have been published on (2R,3S)-2-[(2H-1,3-benzodioxol-5-yl)methyl]-4-(3,4-dimethoxyphenyl)-3-methylbutan-1-ol.

Structure

MOL 3D MOL SDF PDB SMILES InChI


  Mrv1652309052204422D          

 26 28  0  0  1  0            999 V2000
   -3.5724   -4.5375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5724   -3.7125    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8579   -3.3000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8579   -2.4750    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1434   -2.0625    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4289   -2.4750    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7145   -2.0625    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0000   -2.4750    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    0.0000   -3.3000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7145   -2.0625    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    0.7145   -1.2375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4289   -0.8250    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.4289   -2.4750    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.1434   -2.0625    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.1434   -1.2375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.8579   -0.8250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.5724   -1.2375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.5724   -2.0625    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.8579   -2.4750    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.3570   -2.3174    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.8419   -1.6500    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.3570   -0.9826    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4289   -3.3000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1434   -3.7125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1434   -4.5375    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8579   -4.9500    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  1  0  0  0  0
  3  4  2  0  0  0  0
  4  5  1  0  0  0  0
  5  6  2  0  0  0  0
  6  7  1  0  0  0  0
  7  8  1  0  0  0  0
  8  9  1  1  0  0  0
  8 10  1  0  0  0  0
 10 11  1  6  0  0  0
 11 12  1  0  0  0  0
 10 13  1  0  0  0  0
 13 14  1  0  0  0  0
 14 15  2  0  0  0  0
 15 16  1  0  0  0  0
 16 17  2  0  0  0  0
 17 18  1  0  0  0  0
 18 19  2  0  0  0  0
 14 19  1  0  0  0  0
 18 20  1  0  0  0  0
 20 21  1  0  0  0  0
 21 22  1  0  0  0  0
 17 22  1  0  0  0  0
  6 23  1  0  0  0  0
 23 24  2  0  0  0  0
  3 24  1  0  0  0  0
 24 25  1  0  0  0  0
 25 26  1  0  0  0  0
M  END

     RDKit          3D

 52 54  0  0  0  0  0  0  0  0999 V2000
    5.2130    3.7281    0.2990 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.1596    2.3420    0.1562 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.0315    1.5631    0.3102 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.8034    2.0984    0.6317 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.6854    1.2880    0.7800 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.7705   -0.0741    0.6098 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.5773   -0.9393    0.7527 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1199   -1.2343   -0.5544 C   0  0  2  0  0  0  0  0  0  0  0  0
   -0.6177   -0.0484   -1.2919 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1160   -2.3468   -0.3534 C   0  0  2  0  0  0  0  0  0  0  0  0
   -1.7638   -2.7102   -1.6849 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.6686   -3.7798   -1.4971 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1647   -2.0725    0.6848 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.0546   -0.9111    0.4305 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.2161   -1.0871   -0.3120 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.0658   -0.0384   -0.5497 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.8206    1.2346   -0.0716 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.6720    1.4141    0.6651 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8203    0.3583    0.9021 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.6634    2.7735    1.0240 O   0  0  0  0  0  0  0  0  0  0  0  0
   -4.5573    3.5025    0.2033 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.4848    2.4653   -0.1508 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.0195   -0.5931    0.2859 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.1315    0.2037    0.1376 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.3364   -0.3710   -0.1831 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.5462   -1.7377   -0.3799 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.0263    4.1051   -0.3574 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.4654    3.9670    1.3683 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.2698    4.2517    0.0692 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.6825    3.1685    0.7765 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.7446    1.7962    1.0488 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0268   -0.5612    1.5577 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.0209   -1.9582    1.0496 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.7048   -1.6821   -1.2009 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6491   -0.0988   -1.6755 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4984    0.9076   -0.7156 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0023    0.1571   -2.2253 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5585   -3.2424   -0.0302 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9747   -3.0954   -2.3610 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2819   -1.8997   -2.1793 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3412   -4.4141   -0.8262 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7921   -2.9844    0.7520 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6606   -1.9666    1.6602 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.4913   -2.0539   -0.7149 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.9887   -0.1624   -1.1361 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9322    0.5774    1.5070 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.0688    3.8916   -0.7137 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.0537    4.2833    0.8002 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.0835   -1.6610    0.1535 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.7122   -2.2212   -0.9394 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.5107   -1.9110   -0.9017 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.6308   -2.2210    0.6184 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  3  4  2  0
  4  5  1  0
  5  6  2  0
  6  7  1  0
  7  8  1  0
  8  9  1  0
  8 10  1  0
 10 11  1  0
 11 12  1  0
 10 13  1  0
 13 14  1  0
 14 15  2  0
 15 16  1  0
 16 17  2  0
 17 22  1  0
 22 21  1  0
 21 20  1  0
 20 18  1  0
 18 19  2  0
  6 23  1  0
 23 24  2  0
 24 25  1  0
 25 26  1  0
 24  3  1  0
 19 14  1  0
 18 17  1  0
  1 27  1  0
  1 28  1  0
  1 29  1  0
  4 30  1  0
  5 31  1  0
  7 32  1  0
  7 33  1  0
  8 34  1  6
  9 35  1  0
  9 36  1  0
  9 37  1  0
 10 38  1  1
 11 39  1  0
 11 40  1  0
 12 41  1  0
 13 42  1  0
 13 43  1  0
 15 44  1  0
 16 45  1  0
 21 47  1  0
 21 48  1  0
 19 46  1  0
 23 49  1  0
 26 50  1  0
 26 51  1  0
 26 52  1  0
M  END


  Mrv1652309052204422D          

 26 28  0  0  1  0            999 V2000
   -3.5724   -4.5375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5724   -3.7125    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8579   -3.3000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8579   -2.4750    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1434   -2.0625    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4289   -2.4750    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7145   -2.0625    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0000   -2.4750    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    0.0000   -3.3000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7145   -2.0625    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    0.7145   -1.2375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4289   -0.8250    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.4289   -2.4750    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.1434   -2.0625    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.1434   -1.2375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.8579   -0.8250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.5724   -1.2375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.5724   -2.0625    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.8579   -2.4750    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.3570   -2.3174    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.8419   -1.6500    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.3570   -0.9826    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4289   -3.3000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1434   -3.7125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1434   -4.5375    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8579   -4.9500    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  1  0  0  0  0
  3  4  2  0  0  0  0
  4  5  1  0  0  0  0
  5  6  2  0  0  0  0
  6  7  1  0  0  0  0
  7  8  1  0  0  0  0
  8  9  1  1  0  0  0
  8 10  1  0  0  0  0
 10 11  1  6  0  0  0
 11 12  1  0  0  0  0
 10 13  1  0  0  0  0
 13 14  1  0  0  0  0
 14 15  2  0  0  0  0
 15 16  1  0  0  0  0
 16 17  2  0  0  0  0
 17 18  1  0  0  0  0
 18 19  2  0  0  0  0
 14 19  1  0  0  0  0
 18 20  1  0  0  0  0
 20 21  1  0  0  0  0
 21 22  1  0  0  0  0
 17 22  1  0  0  0  0
  6 23  1  0  0  0  0
 23 24  2  0  0  0  0
  3 24  1  0  0  0  0
 24 25  1  0  0  0  0
 25 26  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0206446

> <DATABASE_NAME>
NP-MRD

> <SMILES>
COC1=CC=C(C[C@H](C)[C@H](CO)CC2=CC=C3OCOC3=C2)C=C1OC

> <INCHI_IDENTIFIER>
InChI=1S/C21H26O5/c1-14(8-15-4-6-18(23-2)20(10-15)24-3)17(12-22)9-16-5-7-19-21(11-16)26-13-25-19/h4-7,10-11,14,17,22H,8-9,12-13H2,1-3H3/t14-,17-/m0/s1

> <INCHI_KEY>
XCMBSKCLDDUGOR-YOEHRIQHSA-N

> <FORMULA>
C21H26O5

> <MOLECULAR_WEIGHT>
358.434

> <EXACT_MASS>
358.178023937

> <JCHEM_ACCEPTOR_COUNT>
5

> <JCHEM_ATOM_COUNT>
52

> <JCHEM_AVERAGE_POLARIZABILITY>
40.19110648757309

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
1

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
1

> <JCHEM_IUPAC>
(2R,3S)-2-[(2H-1,3-benzodioxol-5-yl)methyl]-4-(3,4-dimethoxyphenyl)-3-methylbutan-1-ol

> <JCHEM_LOGP>
3.9219500803333336

> <JCHEM_MDDR_LIKE_RULE>
1

> <JCHEM_NUMBER_OF_RINGS>
3

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA_STRONGEST_ACIDIC>
15.451702930775916

> <JCHEM_PKA_STRONGEST_BASIC>
-2.6012251380786147

> <JCHEM_POLAR_SURFACE_AREA>
57.150000000000006

> <JCHEM_REFRACTIVITY>
99.24040000000002

> <JCHEM_ROTATABLE_BOND_COUNT>
8

> <JCHEM_RULE_OF_FIVE>
1

> <JCHEM_TRADITIONAL_IUPAC>
(2R,3S)-2-(2H-1,3-benzodioxol-5-ylmethyl)-4-(3,4-dimethoxyphenyl)-3-methylbutan-1-ol

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 05-SEP-22   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   05-SEP-22         0                                  
HETATM    1  C   UNK     0      -6.668  -8.470   0.000  0.00  0.00           C+0
HETATM    2  O   UNK     0      -6.668  -6.930   0.000  0.00  0.00           O+0
HETATM    3  C   UNK     0      -5.335  -6.160   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0      -5.335  -4.620   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0      -4.001  -3.850   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0      -2.667  -4.620   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0      -1.334  -3.850   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0       0.000  -4.620   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0       0.000  -6.160   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0       1.334  -3.850   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0       1.334  -2.310   0.000  0.00  0.00           C+0
HETATM   12  O   UNK     0       2.667  -1.540   0.000  0.00  0.00           O+0
HETATM   13  C   UNK     0       2.667  -4.620   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0       4.001  -3.850   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0       4.001  -2.310   0.000  0.00  0.00           C+0
HETATM   16  C   UNK     0       5.335  -1.540   0.000  0.00  0.00           C+0
HETATM   17  C   UNK     0       6.668  -2.310   0.000  0.00  0.00           C+0
HETATM   18  C   UNK     0       6.668  -3.850   0.000  0.00  0.00           C+0
HETATM   19  C   UNK     0       5.335  -4.620   0.000  0.00  0.00           C+0
HETATM   20  O   UNK     0       8.133  -4.326   0.000  0.00  0.00           O+0
HETATM   21  C   UNK     0       9.038  -3.080   0.000  0.00  0.00           C+0
HETATM   22  O   UNK     0       8.133  -1.834   0.000  0.00  0.00           O+0
HETATM   23  C   UNK     0      -2.667  -6.160   0.000  0.00  0.00           C+0
HETATM   24  C   UNK     0      -4.001  -6.930   0.000  0.00  0.00           C+0
HETATM   25  O   UNK     0      -4.001  -8.470   0.000  0.00  0.00           O+0
HETATM   26  C   UNK     0      -5.335  -9.240   0.000  0.00  0.00           C+0
CONECT    1    2                                                            
CONECT    2    1    3                                                       
CONECT    3    2    4   24                                                  
CONECT    4    3    5                                                       
CONECT    5    4    6                                                       
CONECT    6    5    7   23                                                  
CONECT    7    6    8                                                       
CONECT    8    7    9   10                                                  
CONECT    9    8                                                            
CONECT   10    8   11   13                                                  
CONECT   11   10   12                                                       
CONECT   12   11                                                            
CONECT   13   10   14                                                       
CONECT   14   13   15   19                                                  
CONECT   15   14   16                                                       
CONECT   16   15   17                                                       
CONECT   17   16   18   22                                                  
CONECT   18   17   19   20                                                  
CONECT   19   18   14                                                       
CONECT   20   18   21                                                       
CONECT   21   20   22                                                       
CONECT   22   21   17                                                       
CONECT   23    6   24                                                       
CONECT   24   23    3   25                                                  
CONECT   25   24   26                                                       
CONECT   26   25                                                            
MASTER        0    0    0    0    0    0    0    0   26    0   56    0
END

View in JSmol

Synonyms

Not Available

Chemical Formula

C₂₁H₂₆O₅

Average Mass

358.4340 Da

Monoisotopic Mass

358.17802 Da

IUPAC Name

(2R,3S)-2-[(2H-1,3-benzodioxol-5-yl)methyl]-4-(3,4-dimethoxyphenyl)-3-methylbutan-1-ol

Traditional Name

(2R,3S)-2-(2H-1,3-benzodioxol-5-ylmethyl)-4-(3,4-dimethoxyphenyl)-3-methylbutan-1-ol

CAS Registry Number

Not Available

SMILES

COC1=CC=C(C[C@H](C)[C@H](CO)CC2=CC=C3OCOC3=C2)C=C1OC

InChI Identifier

InChI=1S/C21H26O5/c1-14(8-15-4-6-18(23-2)20(10-15)24-3)17(12-22)9-16-5-7-19-21(11-16)26-13-25-19/h4-7,10-11,14,17,22H,8-9,12-13H2,1-3H3/t14-,17-/m0/s1

InChI Key

XCMBSKCLDDUGOR-YOEHRIQHSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Not Available

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as dibenzylbutane lignans. These are lignan compounds containing a 2,3-dibenzylbutane moiety.

Kingdom

Organic compounds

Super Class

Lignans, neolignans and related compounds

Class

Dibenzylbutane lignans

Sub Class

Not Available

Direct Parent

Dibenzylbutane lignans

Alternative Parents

Substituents

Dibenzylbutane lignan skeleton
Dimethoxybenzene
O-dimethoxybenzene
Benzodioxole
Phenylpropane
Methoxybenzene
Anisole
Phenol ether
Phenoxy compound
Alkyl aryl ether
Benzenoid
Monocyclic benzene moiety
Oxacycle
Organoheterocyclic compound
Ether
Acetal
Hydrocarbon derivative
Organooxygen compound
Alcohol
Primary alcohol
Organic oxygen compound
Aromatic heteropolycyclic compound

Molecular Framework

Aromatic heteropolycyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	3.92	ChemAxon
pKa (Strongest Acidic)	15.45	ChemAxon
pKa (Strongest Basic)	-2.6	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	5	ChemAxon
Hydrogen Donor Count	1	ChemAxon
Polar Surface Area	57.15 Å²	ChemAxon
Rotatable Bond Count	8	ChemAxon
Refractivity	99.24 m³·mol⁻¹	ChemAxon
Polarizability	40.19 Å³	ChemAxon
Number of Rings	3	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	Yes	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	Yes	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

Not Available

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

163022728

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

LOTUS database [Link]

Showing NP-Card for (2r,3s)-2-(2h-1,3-benzodioxol-5-ylmethyl)-4-(3,4-dimethoxyphenyl)-3-methylbutan-1-ol (NP0206446)

MOL for NP0206446 ((2r,3s)-2-(2h-1,3-benzodioxol-5-ylmethyl)-4-(3,4-dimethoxyphenyl)-3-methylbutan-1-ol)

3D MOL for NP0206446 ((2r,3s)-2-(2h-1,3-benzodioxol-5-ylmethyl)-4-(3,4-dimethoxyphenyl)-3-methylbutan-1-ol)

3D SDF for NP0206446 ((2r,3s)-2-(2h-1,3-benzodioxol-5-ylmethyl)-4-(3,4-dimethoxyphenyl)-3-methylbutan-1-ol)

3D-SDF for NP0206446 ((2r,3s)-2-(2h-1,3-benzodioxol-5-ylmethyl)-4-(3,4-dimethoxyphenyl)-3-methylbutan-1-ol)

PDB for NP0206446 ((2r,3s)-2-(2h-1,3-benzodioxol-5-ylmethyl)-4-(3,4-dimethoxyphenyl)-3-methylbutan-1-ol)

3D PDB for NP0206446 ((2r,3s)-2-(2h-1,3-benzodioxol-5-ylmethyl)-4-(3,4-dimethoxyphenyl)-3-methylbutan-1-ol)

SMILES for NP0206446 ((2r,3s)-2-(2h-1,3-benzodioxol-5-ylmethyl)-4-(3,4-dimethoxyphenyl)-3-methylbutan-1-ol)

INCHI for NP0206446 ((2r,3s)-2-(2h-1,3-benzodioxol-5-ylmethyl)-4-(3,4-dimethoxyphenyl)-3-methylbutan-1-ol)

Structure for NP0206446 ((2r,3s)-2-(2h-1,3-benzodioxol-5-ylmethyl)-4-(3,4-dimethoxyphenyl)-3-methylbutan-1-ol)

3D Structure for NP0206446 ((2r,3s)-2-(2h-1,3-benzodioxol-5-ylmethyl)-4-(3,4-dimethoxyphenyl)-3-methylbutan-1-ol)