NP-MRD: Showing NP-Card for 9-({3-hydroxy-6,9-dimethylidene-2-oxo-octahydroazuleno[4,5-b]furan-3-yl}methyl)-5a,9-dimethyl-3-methylidene-hexahydro-3ah-naphtho[1,2-b]furan-2,6-dione (NP0206017)

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Record Information

Version

2.0

Created at

2022-09-05 02:06:01 UTC

Updated at

2022-09-05 02:06:01 UTC

NP-MRD ID

NP0206017

Secondary Accession Numbers

None

Natural Product Identification

Common Name

9-({3-hydroxy-6,9-dimethylidene-2-oxo-octahydroazuleno[4,5-b]furan-3-yl}methyl)-5a,9-dimethyl-3-methylidene-hexahydro-3ah-naphtho[1,2-b]furan-2,6-dione

Description

9-({3-Hydroxy-6,9-dimethylidene-2-oxo-dodecahydroazuleno[4,5-b]furan-3-yl}methyl)-5a,9-dimethyl-3-methylidene-dodecahydronaphtho[1,2-b]furan-2,6-dione belongs to the class of organic compounds known as guaianolides and derivatives. These are diterpene lactones with a structure characterized by the presence of a gamma-lactone fused to a guaiane, forming 3,6,9-trimethyl-azuleno[4,5-b]furan-2-one or a derivative. 9-({3-hydroxy-6,9-dimethylidene-2-oxo-octahydroazuleno[4,5-b]furan-3-yl}methyl)-5a,9-dimethyl-3-methylidene-hexahydro-3ah-naphtho[1,2-b]furan-2,6-dione is found in Saussurea costus. 9-({3-Hydroxy-6,9-dimethylidene-2-oxo-dodecahydroazuleno[4,5-b]furan-3-yl}methyl)-5a,9-dimethyl-3-methylidene-dodecahydronaphtho[1,2-b]furan-2,6-dione is an extremely weak basic (essentially neutral) compound (based on its pKa).

Structure

MOL 3D MOL SDF PDB SMILES InChI


  Mrv1533004171500422D          

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M  END

     RDKit          3D

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M  END


  Mrv1533004171500422D          

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    2.6723   -2.1613    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.9105   -3.4187    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.5405   -3.9513    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1500   -2.9399    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  1  0  0  0  0
  3  4  1  0  0  0  0
  4  5  1  0  0  0  0
  4  6  1  0  0  0  0
  6  7  1  0  0  0  0
  7  8  1  0  0  0  0
  8  9  1  0  0  0  0
  9 10  2  0  0  0  0
  9 11  1  0  0  0  0
 11 12  1  0  0  0  0
 12 13  1  0  0  0  0
 13 14  1  0  0  0  0
 14 15  2  0  0  0  0
 14 16  1  0  0  0  0
 11 16  1  0  0  0  0
 16 17  1  0  0  0  0
  6 17  1  0  0  0  0
 17 18  1  0  0  0  0
 18 19  1  0  0  0  0
  4 19  1  0  0  0  0
 19 20  2  0  0  0  0
  2 21  1  0  0  0  0
 21 22  1  0  0  0  0
 22 23  1  0  0  0  0
 23 24  2  0  0  0  0
 23 25  1  0  0  0  0
 25 26  1  0  0  0  0
 25 27  1  0  0  0  0
 27 28  1  0  0  0  0
 28 29  1  0  0  0  0
 29 30  1  0  0  0  0
 30 31  1  0  0  0  0
 31 32  1  0  0  0  0
 32 33  2  0  0  0  0
 32 34  1  0  0  0  0
 29 34  1  0  0  0  0
 34 35  2  0  0  0  0
 30 36  1  0  0  0  0
  2 36  1  0  0  0  0
 25 36  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0206017

> <DATABASE_NAME>
NP-MRD

> <SMILES>
CC1(CC2(O)C3CCC(=C)C4CCC(=C)C4C3OC2=O)CCC(=O)C2(C)CCC3C(OC(=O)C3=C)C12

> <INCHI_IDENTIFIER>
InChI=1S/C30H38O6/c1-15-7-9-20-24(22-16(2)6-8-18(15)22)36-27(33)30(20,34)14-28(4)12-11-21(31)29(5)13-10-19-17(3)26(32)35-23(19)25(28)29/h18-20,22-25,34H,1-3,6-14H2,4-5H3

> <INCHI_KEY>
DLIISCBVNDNVDV-UHFFFAOYSA-N

> <FORMULA>
C30H38O6

> <MOLECULAR_WEIGHT>
494.628

> <EXACT_MASS>
494.266838944

> <JCHEM_ACCEPTOR_COUNT>
4

> <JCHEM_ATOM_COUNT>
74

> <JCHEM_AVERAGE_POLARIZABILITY>
54.39787197001534

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
1

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
9-({3-hydroxy-6,9-dimethylidene-2-oxo-dodecahydroazuleno[4,5-b]furan-3-yl}methyl)-5a,9-dimethyl-3-methylidene-dodecahydronaphtho[1,2-b]furan-2,6-dione

> <ALOGPS_LOGP>
3.56

> <JCHEM_LOGP>
4.579868711000001

> <ALOGPS_LOGS>
-4.39

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
6

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA>
19.422544604625063

> <JCHEM_PKA_STRONGEST_ACIDIC>
12.077164004419702

> <JCHEM_PKA_STRONGEST_BASIC>
-4.077248455050499

> <JCHEM_POLAR_SURFACE_AREA>
89.9

> <JCHEM_REFRACTIVITY>
132.73119999999997

> <JCHEM_ROTATABLE_BOND_COUNT>
2

> <JCHEM_RULE_OF_FIVE>
1

> <ALOGPS_SOLUBILITY>
2.01e-02 g/l

> <JCHEM_TRADITIONAL_IUPAC>
9-({3-hydroxy-6,9-dimethylidene-2-oxo-octahydroazuleno[4,5-b]furan-3-yl}methyl)-5a,9-dimethyl-3-methylidene-hexahydro-3aH-naphtho[1,2-b]furan-2,6-dione

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 17-APR-15   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   17-APR-15         0                                  
HETATM    1  C   UNK     0      -1.406  -2.671   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0      -1.091  -4.179   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0       0.339  -3.607   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0       0.559  -2.083   0.000  0.00  0.00           C+0
HETATM    5  O   UNK     0      -0.980  -2.023   0.000  0.00  0.00           O+0
HETATM    6  C   UNK     0       0.457  -0.546   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0      -0.882   0.215   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0      -1.121   1.737   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0      -0.080   2.872   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0      -0.652   4.302   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0       1.456   2.767   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0       2.390   3.991   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0       3.843   3.481   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0       3.807   1.941   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0       5.031   1.007   0.000  0.00  0.00           C+0
HETATM   16  C   UNK     0       2.332   1.500   0.000  0.00  0.00           C+0
HETATM   17  C   UNK     0       1.887   0.025   0.000  0.00  0.00           C+0
HETATM   18  O   UNK     0       2.872  -1.158   0.000  0.00  0.00           O+0
HETATM   19  C   UNK     0       2.052  -2.461   0.000  0.00  0.00           C+0
HETATM   20  O   UNK     0       2.623  -3.891   0.000  0.00  0.00           O+0
HETATM   21  C   UNK     0      -2.630  -4.227   0.000  0.00  0.00           C+0
HETATM   22  C   UNK     0      -3.358  -5.584   0.000  0.00  0.00           C+0
HETATM   23  C   UNK     0      -2.547  -6.893   0.000  0.00  0.00           C+0
HETATM   24  O   UNK     0      -3.275  -8.250   0.000  0.00  0.00           O+0
HETATM   25  C   UNK     0      -1.008  -6.845   0.000  0.00  0.00           C+0
HETATM   26  C   UNK     0      -1.736  -8.202   0.000  0.00  0.00           C+0
HETATM   27  C   UNK     0      -0.197  -8.154   0.000  0.00  0.00           C+0
HETATM   28  C   UNK     0       1.343  -8.106   0.000  0.00  0.00           C+0
HETATM   29  C   UNK     0       2.071  -6.749   0.000  0.00  0.00           C+0
HETATM   30  C   UNK     0       1.259  -5.440   0.000  0.00  0.00           C+0
HETATM   31  O   UNK     0       2.254  -4.264   0.000  0.00  0.00           O+0
HETATM   32  C   UNK     0       3.679  -4.846   0.000  0.00  0.00           C+0
HETATM   33  O   UNK     0       4.988  -4.034   0.000  0.00  0.00           O+0
HETATM   34  C   UNK     0       3.566  -6.382   0.000  0.00  0.00           C+0
HETATM   35  C   UNK     0       4.742  -7.376   0.000  0.00  0.00           C+0
HETATM   36  C   UNK     0      -0.280  -5.488   0.000  0.00  0.00           C+0
CONECT    1    2                                                            
CONECT    2    1    3   21   36                                             
CONECT    3    2    4                                                       
CONECT    4    3    5    6   19                                             
CONECT    5    4                                                            
CONECT    6    4    7   17                                                  
CONECT    7    6    8                                                       
CONECT    8    7    9                                                       
CONECT    9    8   10   11                                                  
CONECT   10    9                                                            
CONECT   11    9   12   16                                                  
CONECT   12   11   13                                                       
CONECT   13   12   14                                                       
CONECT   14   13   15   16                                                  
CONECT   15   14                                                            
CONECT   16   14   11   17                                                  
CONECT   17   16    6   18                                                  
CONECT   18   17   19                                                       
CONECT   19   18    4   20                                                  
CONECT   20   19                                                            
CONECT   21    2   22                                                       
CONECT   22   21   23                                                       
CONECT   23   22   24   25                                                  
CONECT   24   23                                                            
CONECT   25   23   26   27   36                                             
CONECT   26   25                                                            
CONECT   27   25   28                                                       
CONECT   28   27   29                                                       
CONECT   29   28   30   34                                                  
CONECT   30   29   31   36                                                  
CONECT   31   30   32                                                       
CONECT   32   31   33   34                                                  
CONECT   33   32                                                            
CONECT   34   32   29   35                                                  
CONECT   35   34                                                            
CONECT   36   30    2   25                                                  
MASTER        0    0    0    0    0    0    0    0   36    0   82    0
END

View in JSmol

Synonyms

Not Available

Chemical Formula

C₃₀H₃₈O₆

Average Mass

494.6280 Da

Monoisotopic Mass

494.26684 Da

IUPAC Name

9-({3-hydroxy-6,9-dimethylidene-2-oxo-dodecahydroazuleno[4,5-b]furan-3-yl}methyl)-5a,9-dimethyl-3-methylidene-dodecahydronaphtho[1,2-b]furan-2,6-dione

Traditional Name

9-({3-hydroxy-6,9-dimethylidene-2-oxo-octahydroazuleno[4,5-b]furan-3-yl}methyl)-5a,9-dimethyl-3-methylidene-hexahydro-3aH-naphtho[1,2-b]furan-2,6-dione

CAS Registry Number

Not Available

SMILES

CC1(CC2(O)C3CCC(=C)C4CCC(=C)C4C3OC2=O)CCC(=O)C2(C)CCC3C(OC(=O)C3=C)C12

InChI Identifier

InChI=1S/C30H38O6/c1-15-7-9-20-24(22-16(2)6-8-18(15)22)36-27(33)30(20,34)14-28(4)12-11-21(31)29(5)13-10-19-17(3)26(32)35-23(19)25(28)29/h18-20,22-25,34H,1-3,6-14H2,4-5H3

InChI Key

DLIISCBVNDNVDV-UHFFFAOYSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Saussurea costus	LOTUS Database	35616633

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as guaianolides and derivatives. These are diterpene lactones with a structure characterized by the presence of a gamma-lactone fused to a guaiane, forming 3,6,9-trimethyl-azuleno[4,5-b]furan-2-one or a derivative.

Kingdom

Organic compounds

Super Class

Lipids and lipid-like molecules

Class

Prenol lipids

Sub Class

Terpene lactones

Direct Parent

Guaianolides and derivatives

Alternative Parents

Substituents

Eudesmanolide
Guaianolide-skeleton
Eremophilanolide or secoeremophilanolide
Guaiane sesquiterpenoid
Sesquiterpenoid
Naphthofuran
Dicarboxylic acid or derivatives
Gamma butyrolactone
Alpha,beta-unsaturated carboxylic ester
Enoate ester
Oxolane
Tertiary alcohol
Lactone
Ketone
Carboxylic acid ester
Organoheterocyclic compound
Oxacycle
Carboxylic acid derivative
Alcohol
Hydrocarbon derivative
Organic oxide
Organic oxygen compound
Organooxygen compound
Carbonyl group
Aliphatic heteropolycyclic compound

Molecular Framework

Aliphatic heteropolycyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	3.56	ALOGPS
logP	4.58	ChemAxon
logS	-4.4	ALOGPS
pKa (Strongest Acidic)	12.08	ChemAxon
pKa (Strongest Basic)	-4.1	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	4	ChemAxon
Hydrogen Donor Count	1	ChemAxon
Polar Surface Area	89.9 Å²	ChemAxon
Rotatable Bond Count	2	ChemAxon
Refractivity	132.73 m³·mol⁻¹	ChemAxon
Polarizability	54.4 Å³	ChemAxon
Number of Rings	6	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	No	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

Not Available

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

85110209

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

LOTUS database [Link]

Showing NP-Card for 9-({3-hydroxy-6,9-dimethylidene-2-oxo-octahydroazuleno[4,5-b]furan-3-yl}methyl)-5a,9-dimethyl-3-methylidene-hexahydro-3ah-naphtho[1,2-b]furan-2,6-dione (NP0206017)

MOL for NP0206017 (9-({3-hydroxy-6,9-dimethylidene-2-oxo-octahydroazuleno[4,5-b]furan-3-yl}methyl)-5a,9-dimethyl-3-methylidene-hexahydro-3ah-naphtho[1,2-b]furan-2,6-dione)

3D MOL for NP0206017 (9-({3-hydroxy-6,9-dimethylidene-2-oxo-octahydroazuleno[4,5-b]furan-3-yl}methyl)-5a,9-dimethyl-3-methylidene-hexahydro-3ah-naphtho[1,2-b]furan-2,6-dione)

3D SDF for NP0206017 (9-({3-hydroxy-6,9-dimethylidene-2-oxo-octahydroazuleno[4,5-b]furan-3-yl}methyl)-5a,9-dimethyl-3-methylidene-hexahydro-3ah-naphtho[1,2-b]furan-2,6-dione)

3D-SDF for NP0206017 (9-({3-hydroxy-6,9-dimethylidene-2-oxo-octahydroazuleno[4,5-b]furan-3-yl}methyl)-5a,9-dimethyl-3-methylidene-hexahydro-3ah-naphtho[1,2-b]furan-2,6-dione)

PDB for NP0206017 (9-({3-hydroxy-6,9-dimethylidene-2-oxo-octahydroazuleno[4,5-b]furan-3-yl}methyl)-5a,9-dimethyl-3-methylidene-hexahydro-3ah-naphtho[1,2-b]furan-2,6-dione)

3D PDB for NP0206017 (9-({3-hydroxy-6,9-dimethylidene-2-oxo-octahydroazuleno[4,5-b]furan-3-yl}methyl)-5a,9-dimethyl-3-methylidene-hexahydro-3ah-naphtho[1,2-b]furan-2,6-dione)

SMILES for NP0206017 (9-({3-hydroxy-6,9-dimethylidene-2-oxo-octahydroazuleno[4,5-b]furan-3-yl}methyl)-5a,9-dimethyl-3-methylidene-hexahydro-3ah-naphtho[1,2-b]furan-2,6-dione)

INCHI for NP0206017 (9-({3-hydroxy-6,9-dimethylidene-2-oxo-octahydroazuleno[4,5-b]furan-3-yl}methyl)-5a,9-dimethyl-3-methylidene-hexahydro-3ah-naphtho[1,2-b]furan-2,6-dione)

Structure for NP0206017 (9-({3-hydroxy-6,9-dimethylidene-2-oxo-octahydroazuleno[4,5-b]furan-3-yl}methyl)-5a,9-dimethyl-3-methylidene-hexahydro-3ah-naphtho[1,2-b]furan-2,6-dione)

3D Structure for NP0206017 (9-({3-hydroxy-6,9-dimethylidene-2-oxo-octahydroazuleno[4,5-b]furan-3-yl}methyl)-5a,9-dimethyl-3-methylidene-hexahydro-3ah-naphtho[1,2-b]furan-2,6-dione)