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Showing NP-Card for (3r,6r)-3,6-bis(2-methylpropyl)-1,2,4,5-tetrathiane (NP0205974)

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Record Information
Version2.0
Created at2022-09-05 02:02:41 UTC
Updated at2022-09-05 02:02:42 UTC
NP-MRD IDNP0205974
Secondary Accession NumbersNone
Natural Product Identification
Common Name(3r,6r)-3,6-bis(2-methylpropyl)-1,2,4,5-tetrathiane
Description (3r,6r)-3,6-bis(2-methylpropyl)-1,2,4,5-tetrathiane is found in Thermococcus acidaminovorans.
Structure
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MOL3D MOLSDFPDBSMILESInChI

MOL for NP0205974 ((3r,6r)-3,6-bis(2-methylpropyl)-1,2,4,5-tetrathiane)


  Mrv1652309052204022D          

 14 14  0  0  0  0            999 V2000
    0.0000    3.3000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0000    2.4750    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7145    2.0625    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7145    2.0625    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7145    1.2375    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    1.4289    0.8250    0.0000 S   0  0  0  0  0  0  0  0  0  0  0  0
    1.4289   -0.0000    0.0000 S   0  0  0  0  0  0  0  0  0  0  0  0
    0.7145   -0.4125    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    0.7145   -1.2375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0000   -1.6500    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0000   -2.4750    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7145   -1.2375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0000    0.0000    0.0000 S   0  0  0  0  0  0  0  0  0  0  0  0
    0.0000    0.8250    0.0000 S   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  1  0  0  0  0
  2  4  1  0  0  0  0
  5  4  1  1  0  0  0
  5  6  1  0  0  0  0
  6  7  1  0  0  0  0
  7  8  1  0  0  0  0
  8  9  1  6  0  0  0
  9 10  1  0  0  0  0
 10 11  1  0  0  0  0
 10 12  1  0  0  0  0
  8 13  1  0  0  0  0
 13 14  1  0  0  0  0
  5 14  1  0  0  0  0
M  END
Download

3D MOL for NP0205974 ((3r,6r)-3,6-bis(2-methylpropyl)-1,2,4,5-tetrathiane)

     RDKit          3D

 34 34  0  0  0  0  0  0  0  0999 V2000
   -3.8957   -1.0134    0.9736 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.9229    0.3829    0.4761 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.9279    0.4686   -0.6537 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.6082    0.9679    0.1002 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8627    0.2750   -0.9720 C   0  0  1  0  0  0  0  0  0  0  0  0
   -0.2970    1.1995   -1.2285 S   0  0  0  0  0  0  0  0  0  0  0  0
    0.9029    0.7758    0.4799 S   0  0  0  0  0  0  0  0  0  0  0  0
    1.5358   -0.8839    0.3188 C   0  0  2  0  0  0  0  0  0  0  0  0
    2.8844   -0.9278   -0.3639 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.9484   -0.1559    0.3661 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.6521    1.3018    0.5280 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.2138   -0.2609   -0.4948 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.4392   -2.0195   -0.5144 S   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5255   -1.4371   -0.7118 S   0  0  0  0  0  0  0  0  0  0  0  0
   -4.8076   -1.1609    1.6058 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.0407   -1.2103    1.6803 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.9605   -1.7874    0.1813 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.3422    1.0273    1.2993 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.9500    0.4372   -0.1984 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.7688    1.3550   -1.2748 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.8432   -0.4876   -1.2278 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9532    1.0901    0.9863 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8111    2.0193   -0.2527 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4282    0.4091   -1.9388 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.7114   -1.2841    1.3593 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.2588   -1.9664   -0.4714 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.7732   -0.5526   -1.4148 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.1705   -0.6452    1.3309 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.1324    1.6673   -0.3682 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.1251    1.5178    1.4777 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.6414    1.8269    0.5863 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.0888   -0.4511    0.1597 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.1520   -1.1256   -1.1851 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.3156    0.6484   -1.1094 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  2  4  1  0
  4  5  1  0
  5  6  1  0
  6  7  1  0
  7  8  1  0
  8  9  1  0
  9 10  1  0
 10 11  1  0
 10 12  1  0
  8 13  1  0
 13 14  1  0
 14  5  1  0
  1 15  1  0
  1 16  1  0
  1 17  1  0
  2 18  1  0
  3 19  1  0
  3 20  1  0
  3 21  1  0
  4 22  1  0
  4 23  1  0
  5 24  1  6
  8 25  1  1
  9 26  1  0
  9 27  1  0
 10 28  1  0
 11 29  1  0
 11 30  1  0
 11 31  1  0
 12 32  1  0
 12 33  1  0
 12 34  1  0
M  END
Download

3D SDF for NP0205974 ((3r,6r)-3,6-bis(2-methylpropyl)-1,2,4,5-tetrathiane)


  Mrv1652309052204022D          

 14 14  0  0  0  0            999 V2000
    0.0000    3.3000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0000    2.4750    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7145    2.0625    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7145    2.0625    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7145    1.2375    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    1.4289    0.8250    0.0000 S   0  0  0  0  0  0  0  0  0  0  0  0
    1.4289   -0.0000    0.0000 S   0  0  0  0  0  0  0  0  0  0  0  0
    0.7145   -0.4125    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    0.7145   -1.2375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0000   -1.6500    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0000   -2.4750    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7145   -1.2375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0000    0.0000    0.0000 S   0  0  0  0  0  0  0  0  0  0  0  0
    0.0000    0.8250    0.0000 S   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  1  0  0  0  0
  2  4  1  0  0  0  0
  5  4  1  1  0  0  0
  5  6  1  0  0  0  0
  6  7  1  0  0  0  0
  7  8  1  0  0  0  0
  8  9  1  6  0  0  0
  9 10  1  0  0  0  0
 10 11  1  0  0  0  0
 10 12  1  0  0  0  0
  8 13  1  0  0  0  0
 13 14  1  0  0  0  0
  5 14  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0205974

> <DATABASE_NAME>
NP-MRD

> <SMILES>
CC(C)C[C@H]1SS[C@H](CC(C)C)SS1

> <INCHI_IDENTIFIER>
InChI=1S/C10H20S4/c1-7(2)5-9-11-13-10(14-12-9)6-8(3)4/h7-10H,5-6H2,1-4H3/t9-,10-

> <INCHI_KEY>
FEYLVKQVJNXDSK-MGCOHNPYSA-N

> <FORMULA>
C10H20S4

> <MOLECULAR_WEIGHT>
268.51

> <EXACT_MASS>
268.04478534

> <JCHEM_ACCEPTOR_COUNT>
0

> <JCHEM_ATOM_COUNT>
34

> <JCHEM_AVERAGE_POLARIZABILITY>
30.504312546345695

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
0

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
1

> <JCHEM_IUPAC>
(3r,6r)-3,6-bis(2-methylpropyl)-1,2,4,5-tetrathiane

> <JCHEM_LOGP>
5.133297139333334

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
1

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_POLAR_SURFACE_AREA>
0.0

> <JCHEM_REFRACTIVITY>
76.916

> <JCHEM_ROTATABLE_BOND_COUNT>
4

> <JCHEM_RULE_OF_FIVE>
0

> <JCHEM_TRADITIONAL_IUPAC>
(3r,6r)-3,6-bis(2-methylpropyl)-1,2,4,5-tetrathiane

> <JCHEM_VEBER_RULE>
1

$$$$
Download

3D-SDF for NP0205974 ((3r,6r)-3,6-bis(2-methylpropyl)-1,2,4,5-tetrathiane)

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PDB for NP0205974 ((3r,6r)-3,6-bis(2-methylpropyl)-1,2,4,5-tetrathiane)
HEADER    PROTEIN                                 05-SEP-22   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   05-SEP-22         0                                  
HETATM    1  C   UNK     0       0.000   6.160   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0       0.000   4.620   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0      -1.334   3.850   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0       1.334   3.850   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0       1.334   2.310   0.000  0.00  0.00           C+0
HETATM    6  S   UNK     0       2.667   1.540   0.000  0.00  0.00           S+0
HETATM    7  S   UNK     0       2.667  -0.000   0.000  0.00  0.00           S+0
HETATM    8  C   UNK     0       1.334  -0.770   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0       1.334  -2.310   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0      -0.000  -3.080   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0      -0.000  -4.620   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0      -1.334  -2.310   0.000  0.00  0.00           C+0
HETATM   13  S   UNK     0       0.000   0.000   0.000  0.00  0.00           S+0
HETATM   14  S   UNK     0       0.000   1.540   0.000  0.00  0.00           S+0
CONECT    1    2                                                            
CONECT    2    1    3    4                                                  
CONECT    3    2                                                            
CONECT    4    2    5                                                       
CONECT    5    4    6   14                                                  
CONECT    6    5    7                                                       
CONECT    7    6    8                                                       
CONECT    8    7    9   13                                                  
CONECT    9    8   10                                                       
CONECT   10    9   11   12                                                  
CONECT   11   10                                                            
CONECT   12   10                                                            
CONECT   13    8   14                                                       
CONECT   14   13    5                                                       
MASTER        0    0    0    0    0    0    0    0   14    0   28    0
END

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3D PDB for NP0205974 ((3r,6r)-3,6-bis(2-methylpropyl)-1,2,4,5-tetrathiane)
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SMILES for NP0205974 ((3r,6r)-3,6-bis(2-methylpropyl)-1,2,4,5-tetrathiane)
CC(C)C[C@H]1SS[C@H](CC(C)C)SS1
Download
INCHI for NP0205974 ((3r,6r)-3,6-bis(2-methylpropyl)-1,2,4,5-tetrathiane)
InChI=1S/C10H20S4/c1-7(2)5-9-11-13-10(14-12-9)6-8(3)4/h7-10H,5-6H2,1-4H3/t9-,10-
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View in JSmol
SynonymsNot Available
Chemical FormulaC10H20S4
Average Mass268.5100 Da
Monoisotopic Mass268.04479 Da
IUPAC Name(3r,6r)-3,6-bis(2-methylpropyl)-1,2,4,5-tetrathiane
Traditional Name(3r,6r)-3,6-bis(2-methylpropyl)-1,2,4,5-tetrathiane
CAS Registry NumberNot Available
SMILES
CC(C)C[C@H]1SS[C@H](CC(C)C)SS1
InChI Identifier
InChI=1S/C10H20S4/c1-7(2)5-9-11-13-10(14-12-9)6-8(3)4/h7-10H,5-6H2,1-4H3/t9-,10-
InChI KeyFEYLVKQVJNXDSK-MGCOHNPYSA-N
Experimental Spectra
Not Available
Predicted Spectra
Spectrum TypeDescriptionDepositor IDDepositor OrganizationDepositorDeposition DateView
1D NMR13C NMR Spectrum (1D, 25 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 100 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 252 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 1000 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 50 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 200 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 75 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 300 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 101 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 400 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 126 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 500 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 151 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 600 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 176 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 700 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 201 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 800 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 226 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 900 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
Chemical Shift Submissions
Not Available
Species
Species of Origin
Species NameSourceReference
Thermococcus acidaminovoransLOTUS Database
Chemical Taxonomy
ClassificationNot classified
Physical Properties
StateNot Available
Experimental Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Predicted Properties
PropertyValueSource
logP5.13ChemAxon
Physiological Charge0ChemAxon
Hydrogen Acceptor Count0ChemAxon
Hydrogen Donor Count0ChemAxon
Polar Surface Area0 ŲChemAxon
Rotatable Bond Count4ChemAxon
Refractivity76.92 m³·mol⁻¹ChemAxon
Polarizability30.5 ųChemAxon
Number of Rings1ChemAxon
BioavailabilityYesChemAxon
Rule of FiveNoChemAxon
Ghose FilterYesChemAxon
Veber's RuleYesChemAxon
MDDR-like RuleNoChemAxon
External LinksNot Available
References
General References
  1. LOTUS database [Link]