NP-MRD: Showing NP-Card for 5-carbamimidamido-2-[2-(1h-indol-3-yl)-2-oxoacetamido]pentanoic acid (NP0205728)

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Record Information

Version

2.0

Created at

2022-09-05 01:42:31 UTC

Updated at

2022-09-05 01:42:31 UTC

NP-MRD ID

NP0205728

Secondary Accession Numbers

None

Natural Product Identification

Common Name

5-carbamimidamido-2-[2-(1h-indol-3-yl)-2-oxoacetamido]pentanoic acid

Description

5-Carbamimidamido-2-[2-(1H-indol-3-yl)-2-oxoacetamido]pentanoic acid belongs to the class of organic compounds known as arginine and derivatives. Arginine and derivatives are compounds containing arginine or a derivative thereof resulting from reaction of arginine at the amino group or the carboxy group, or from the replacement of any hydrogen of glycine by a heteroatom. 5-Carbamimidamido-2-[2-(1H-indol-3-yl)-2-oxoacetamido]pentanoic acid is a very strong basic compound (based on its pKa).

Structure

MOL 3D MOL SDF PDB SMILES InChI


  Mrv1533004231517472D          

 25 26  0  0  0  0            999 V2000
    7.5706   -1.7343    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    8.2850   -2.1468    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.2850   -2.9718    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    8.9995   -1.7343    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    9.7140   -2.1468    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   10.4284   -1.7343    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   11.1429   -2.1468    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   11.8574   -1.7343    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   12.5719   -2.1468    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
   13.2863   -1.7343    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   13.2863   -0.9093    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   14.0008   -2.1468    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   14.0008   -2.9718    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   14.7153   -1.7343    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   14.8015   -0.9138    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   15.6085   -0.7423    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
   16.0210   -1.4567    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   16.8279   -1.6283    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   17.0829   -2.4129    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   16.5309   -3.0260    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   15.7239   -2.8545    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   15.4689   -2.0698    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   11.8574   -0.9093    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   12.5719   -0.4968    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   11.1429   -0.4968    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  2  0  0  0  0
  2  4  1  0  0  0  0
  4  5  1  0  0  0  0
  5  6  1  0  0  0  0
  6  7  1  0  0  0  0
  7  8  1  0  0  0  0
  8  9  1  0  0  0  0
  9 10  1  0  0  0  0
 10 11  2  0  0  0  0
 10 12  1  0  0  0  0
 12 13  2  0  0  0  0
 12 14  1  0  0  0  0
 14 15  2  0  0  0  0
 15 16  1  0  0  0  0
 16 17  1  0  0  0  0
 17 18  2  0  0  0  0
 18 19  1  0  0  0  0
 19 20  2  0  0  0  0
 20 21  1  0  0  0  0
 21 22  2  0  0  0  0
 14 22  1  0  0  0  0
 17 22  1  0  0  0  0
  8 23  1  0  0  0  0
 23 24  2  0  0  0  0
 23 25  1  0  0  0  0
M  END

     RDKit          3D

 44 45  0  0  0  0  0  0  0  0999 V2000
    6.7982    1.5058    1.8779 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.3079    1.3728    0.9611 N   0  0  0  0  0  0  0  0  0  0  0  0
    5.2380    0.6600    0.9638 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.7168    0.0645    2.1392 N   0  0  0  0  0  0  0  0  0  0  0  0
    4.5617    0.4688   -0.2667 N   0  0  0  0  0  0  0  0  0  0  0  0
    3.3436    1.1825   -0.5283 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.2036    0.6997    0.3813 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.9451   -0.7504    0.1784 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.5192   -1.1112   -1.2494 C   0  0  2  0  0  0  0  0  0  0  0  0
    0.2977   -0.5048   -1.6675 N   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7818   -0.0676   -0.8690 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7775   -0.1926    0.3955 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9456    0.5430   -1.4434 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8728    0.7826   -2.7136 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.1672    0.9204   -0.7812 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.8572    2.1300   -0.9943 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.9036    2.1852   -0.1670 N   0  0  0  0  0  0  0  0  0  0  0  0
   -4.9668    1.0645    0.6074 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.8455    0.6510    1.5752 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.6661   -0.5612    2.1799 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.6099   -1.3687    1.8229 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.7341   -0.9389    0.8481 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.8720    0.2845    0.2071 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4325   -2.5739   -1.3356 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.3307   -3.0842   -1.7487 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.4620   -3.4386   -1.0004 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.5714    0.6114    3.0272 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.4666   -0.9486    2.1323 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.9312   -0.1809   -0.9872 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.5157    2.2701   -0.2817 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.9975    1.1556   -1.5574 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.3300    1.3308    0.2722 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.5973    0.8422    1.4231 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.9532   -1.2728    0.2986 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.2162   -1.1753    0.8800 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.3717   -0.7119   -1.9125 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.1502   -0.3463   -2.7234 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5232    2.8458   -1.7323 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.5815    2.9702   -0.1152 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.6648    1.2719    1.8541 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.3424   -0.9397    2.9631 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.4345   -2.3363    2.2770 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9066   -1.5741    0.5256 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.1953   -3.7351   -1.5999 H   0  0  0  0  0  0  0  0  0  0  0  0
  4  3  1  0
  3  2  2  0
  3  5  1  0
  5  6  1  0
  6  7  1  0
  7  8  1  0
  8  9  1  0
  9 10  1  0
 10 11  1  0
 11 12  2  0
 11 13  1  0
 13 14  2  0
 13 15  1  0
 15 16  2  0
 16 17  1  0
 17 18  1  0
 18 19  2  0
 19 20  1  0
 20 21  2  0
 21 22  1  0
 22 23  2  0
  9 24  1  0
 24 26  1  0
 24 25  2  0
 23 15  1  0
 23 18  1  0
  4 27  1  0
  4 28  1  0
  2  1  1  0
  5 29  1  0
  6 30  1  0
  6 31  1  0
  7 32  1  0
  7 33  1  0
  8 34  1  0
  8 35  1  0
  9 36  1  6
 10 37  1  0
 16 38  1  0
 17 39  1  0
 19 40  1  0
 20 41  1  0
 21 42  1  0
 22 43  1  0
 26 44  1  0
M  END


  Mrv1533004231517472D          

 25 26  0  0  0  0            999 V2000
    7.5706   -1.7343    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    8.2850   -2.1468    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.2850   -2.9718    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    8.9995   -1.7343    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    9.7140   -2.1468    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   10.4284   -1.7343    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   11.1429   -2.1468    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   11.8574   -1.7343    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   12.5719   -2.1468    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
   13.2863   -1.7343    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   13.2863   -0.9093    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   14.0008   -2.1468    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   14.0008   -2.9718    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   14.7153   -1.7343    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   14.8015   -0.9138    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   15.6085   -0.7423    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
   16.0210   -1.4567    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   16.8279   -1.6283    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   17.0829   -2.4129    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   16.5309   -3.0260    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   15.7239   -2.8545    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   15.4689   -2.0698    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   11.8574   -0.9093    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   12.5719   -0.4968    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   11.1429   -0.4968    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  2  0  0  0  0
  2  4  1  0  0  0  0
  4  5  1  0  0  0  0
  5  6  1  0  0  0  0
  6  7  1  0  0  0  0
  7  8  1  0  0  0  0
  8  9  1  0  0  0  0
  9 10  1  0  0  0  0
 10 11  2  0  0  0  0
 10 12  1  0  0  0  0
 12 13  2  0  0  0  0
 12 14  1  0  0  0  0
 14 15  2  0  0  0  0
 15 16  1  0  0  0  0
 16 17  1  0  0  0  0
 17 18  2  0  0  0  0
 18 19  1  0  0  0  0
 19 20  2  0  0  0  0
 20 21  1  0  0  0  0
 21 22  2  0  0  0  0
 14 22  1  0  0  0  0
 17 22  1  0  0  0  0
  8 23  1  0  0  0  0
 23 24  2  0  0  0  0
 23 25  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0205728

> <DATABASE_NAME>
NP-MRD

> <SMILES>
NC(=N)NCCCC(NC(=O)C(=O)C1=CNC2=CC=CC=C12)C(O)=O

> <INCHI_IDENTIFIER>
InChI=1S/C16H19N5O4/c17-16(18)19-7-3-6-12(15(24)25)21-14(23)13(22)10-8-20-11-5-2-1-4-9(10)11/h1-2,4-5,8,12,20H,3,6-7H2,(H,21,23)(H,24,25)(H4,17,18,19)

> <INCHI_KEY>
QSFREQDMGGYRDC-UHFFFAOYSA-N

> <FORMULA>
C16H19N5O4

> <MOLECULAR_WEIGHT>
345.359

> <EXACT_MASS>
345.143704112

> <JCHEM_ACCEPTOR_COUNT>
7

> <JCHEM_ATOM_COUNT>
44

> <JCHEM_AVERAGE_POLARIZABILITY>
35.1442043292555

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
6

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
5-carbamimidamido-2-[2-(1H-indol-3-yl)-2-oxoacetamido]pentanoic acid

> <ALOGPS_LOGP>
-0.06

> <JCHEM_LOGP>
-1.5025232231296486

> <ALOGPS_LOGS>
-3.54

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
2

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA>
11.721922031764342

> <JCHEM_PKA_STRONGEST_ACIDIC>
-0.852442988011779

> <JCHEM_PKA_STRONGEST_BASIC>
12.208588297615934

> <JCHEM_POLAR_SURFACE_AREA>
161.15999999999997

> <JCHEM_REFRACTIVITY>
100.06540000000001

> <JCHEM_ROTATABLE_BOND_COUNT>
8

> <JCHEM_RULE_OF_FIVE>
0

> <ALOGPS_SOLUBILITY>
1.00e-01 g/l

> <JCHEM_TRADITIONAL_IUPAC>
5-carbamimidamido-2-[2-(1H-indol-3-yl)-2-oxoacetamido]pentanoic acid

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 23-APR-15   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   23-APR-15         0                                  
HETATM    1  N   UNK     0      14.132  -3.237   0.000  0.00  0.00           N+0
HETATM    2  C   UNK     0      15.465  -4.007   0.000  0.00  0.00           C+0
HETATM    3  N   UNK     0      15.465  -5.547   0.000  0.00  0.00           N+0
HETATM    4  N   UNK     0      16.799  -3.237   0.000  0.00  0.00           N+0
HETATM    5  C   UNK     0      18.133  -4.007   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0      19.466  -3.237   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0      20.800  -4.007   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0      22.134  -3.237   0.000  0.00  0.00           C+0
HETATM    9  N   UNK     0      23.467  -4.007   0.000  0.00  0.00           N+0
HETATM   10  C   UNK     0      24.801  -3.237   0.000  0.00  0.00           C+0
HETATM   11  O   UNK     0      24.801  -1.697   0.000  0.00  0.00           O+0
HETATM   12  C   UNK     0      26.135  -4.007   0.000  0.00  0.00           C+0
HETATM   13  O   UNK     0      26.135  -5.547   0.000  0.00  0.00           O+0
HETATM   14  C   UNK     0      27.468  -3.237   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0      27.629  -1.706   0.000  0.00  0.00           C+0
HETATM   16  N   UNK     0      29.136  -1.386   0.000  0.00  0.00           N+0
HETATM   17  C   UNK     0      29.906  -2.719   0.000  0.00  0.00           C+0
HETATM   18  C   UNK     0      31.412  -3.039   0.000  0.00  0.00           C+0
HETATM   19  C   UNK     0      31.888  -4.504   0.000  0.00  0.00           C+0
HETATM   20  C   UNK     0      30.858  -5.648   0.000  0.00  0.00           C+0
HETATM   21  C   UNK     0      29.351  -5.328   0.000  0.00  0.00           C+0
HETATM   22  C   UNK     0      28.875  -3.864   0.000  0.00  0.00           C+0
HETATM   23  C   UNK     0      22.134  -1.697   0.000  0.00  0.00           C+0
HETATM   24  O   UNK     0      23.467  -0.927   0.000  0.00  0.00           O+0
HETATM   25  O   UNK     0      20.800  -0.927   0.000  0.00  0.00           O+0
CONECT    1    2                                                            
CONECT    2    1    3    4                                                  
CONECT    3    2                                                            
CONECT    4    2    5                                                       
CONECT    5    4    6                                                       
CONECT    6    5    7                                                       
CONECT    7    6    8                                                       
CONECT    8    7    9   23                                                  
CONECT    9    8   10                                                       
CONECT   10    9   11   12                                                  
CONECT   11   10                                                            
CONECT   12   10   13   14                                                  
CONECT   13   12                                                            
CONECT   14   12   15   22                                                  
CONECT   15   14   16                                                       
CONECT   16   15   17                                                       
CONECT   17   16   18   22                                                  
CONECT   18   17   19                                                       
CONECT   19   18   20                                                       
CONECT   20   19   21                                                       
CONECT   21   20   22                                                       
CONECT   22   21   14   17                                                  
CONECT   23    8   24   25                                                  
CONECT   24   23                                                            
CONECT   25   23                                                            
MASTER        0    0    0    0    0    0    0    0   25    0   52    0
END

View in JSmol

Synonyms

Value	Source
5-Carbamimidamido-2-[2-(1H-indol-3-yl)-2-oxoacetamido]pentanoate	Generator

Chemical Formula

C₁₆H₁₉N₅O₄

Average Mass

345.3590 Da

Monoisotopic Mass

345.14370 Da

IUPAC Name

5-carbamimidamido-2-[2-(1H-indol-3-yl)-2-oxoacetamido]pentanoic acid

Traditional Name

5-carbamimidamido-2-[2-(1H-indol-3-yl)-2-oxoacetamido]pentanoic acid

CAS Registry Number

Not Available

SMILES

NC(=N)NCCCC(NC(=O)C(=O)C1=CNC2=CC=CC=C12)C(O)=O

InChI Identifier

InChI=1S/C16H19N5O4/c17-16(18)19-7-3-6-12(15(24)25)21-14(23)13(22)10-8-20-11-5-2-1-4-9(10)11/h1-2,4-5,8,12,20H,3,6-7H2,(H,21,23)(H,24,25)(H4,17,18,19)

InChI Key

QSFREQDMGGYRDC-UHFFFAOYSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Not Available

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as arginine and derivatives. Arginine and derivatives are compounds containing arginine or a derivative thereof resulting from reaction of arginine at the amino group or the carboxy group, or from the replacement of any hydrogen of glycine by a heteroatom.

Kingdom

Organic compounds

Super Class

Organic acids and derivatives

Class

Carboxylic acids and derivatives

Sub Class

Amino acids, peptides, and analogues

Direct Parent

Arginine and derivatives

Alternative Parents

Substituents

Arginine or derivatives
N-acyl-alpha-amino acid
N-acyl-alpha amino acid or derivatives
Indole
Indole or derivatives
Aryl ketone
Substituted pyrrole
Benzenoid
Pyrrole
Heteroaromatic compound
Vinylogous amide
Carboxamide group
Guanidine
Secondary carboxylic acid amide
Ketone
Carboximidamide
Organoheterocyclic compound
Azacycle
Carboxylic acid
Monocarboxylic acid or derivatives
Organic oxygen compound
Organic nitrogen compound
Imine
Carbonyl group
Organic oxide
Hydrocarbon derivative
Organonitrogen compound
Organooxygen compound
Aromatic heteropolycyclic compound

Molecular Framework

Aromatic heteropolycyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	-0.06	ALOGPS
logP	-1.5	ChemAxon
logS	-3.5	ALOGPS
pKa (Strongest Acidic)	-0.85	ChemAxon
pKa (Strongest Basic)	12.21	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	7	ChemAxon
Hydrogen Donor Count	6	ChemAxon
Polar Surface Area	161.16 Å²	ChemAxon
Rotatable Bond Count	8	ChemAxon
Refractivity	100.07 m³·mol⁻¹	ChemAxon
Polarizability	35.14 Å³	ChemAxon
Number of Rings	2	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	No	ChemAxon
Ghose Filter	No	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

Not Available

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

74834022

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

LOTUS database [Link]

Showing NP-Card for 5-carbamimidamido-2-[2-(1h-indol-3-yl)-2-oxoacetamido]pentanoic acid (NP0205728)

MOL for NP0205728 (5-carbamimidamido-2-[2-(1h-indol-3-yl)-2-oxoacetamido]pentanoic acid)

3D MOL for NP0205728 (5-carbamimidamido-2-[2-(1h-indol-3-yl)-2-oxoacetamido]pentanoic acid)

3D SDF for NP0205728 (5-carbamimidamido-2-[2-(1h-indol-3-yl)-2-oxoacetamido]pentanoic acid)

3D-SDF for NP0205728 (5-carbamimidamido-2-[2-(1h-indol-3-yl)-2-oxoacetamido]pentanoic acid)

PDB for NP0205728 (5-carbamimidamido-2-[2-(1h-indol-3-yl)-2-oxoacetamido]pentanoic acid)

3D PDB for NP0205728 (5-carbamimidamido-2-[2-(1h-indol-3-yl)-2-oxoacetamido]pentanoic acid)

SMILES for NP0205728 (5-carbamimidamido-2-[2-(1h-indol-3-yl)-2-oxoacetamido]pentanoic acid)

INCHI for NP0205728 (5-carbamimidamido-2-[2-(1h-indol-3-yl)-2-oxoacetamido]pentanoic acid)

Structure for NP0205728 (5-carbamimidamido-2-[2-(1h-indol-3-yl)-2-oxoacetamido]pentanoic acid)

3D Structure for NP0205728 (5-carbamimidamido-2-[2-(1h-indol-3-yl)-2-oxoacetamido]pentanoic acid)