NP-MRD: Showing NP-Card for (1r,2s,6s,9s,11s,14s,15s,17r,18s,20s,23r,24s)-6,10,23-trimethyl-4-azahexacyclo[12.11.0.0²,¹¹.0⁴,⁹.0¹⁵,²⁴.0¹⁸,²³]pentacosane-17,20-diol (NP0205447)

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Record Information

Version

1.0

Created at

2022-09-05 01:21:59 UTC

Updated at

2022-09-05 01:21:59 UTC

NP-MRD ID

NP0205447

Secondary Accession Numbers

None

Natural Product Identification

Common Name

(1r,2s,6s,9s,11s,14s,15s,17r,18s,20s,23r,24s)-6,10,23-trimethyl-4-azahexacyclo[12.11.0.0²,¹¹.0⁴,⁹.0¹⁵,²⁴.0¹⁸,²³]pentacosane-17,20-diol

Description

Ebeiedine belongs to the class of organic compounds known as cerveratrum-type alkaloids. These are steroidal alkaloids containing the cevane (23-methyl-4- azahexacyclo[12.11.0.0^{2,11}.0^{4,9}.0^{15,24}.0^{18,23}]Pentacosane) moiety, which is a six ring system. Cerveratrum alkaloids have 7-9 oxygen atoms and occur as free alkamines or esters of simple aliphatic or aromatic acids. (1r,2s,6s,9s,11s,14s,15s,17r,18s,20s,23r,24s)-6,10,23-trimethyl-4-azahexacyclo[12.11.0.0²,¹¹.0⁴,⁹.0¹⁵,²⁴.0¹⁸,²³]pentacosane-17,20-diol is found in Fritillaria anhuiensis, Fritillaria cirrhosa and Fritillaria thunbergii. It was first documented in 2012 (PMID: 36070501). Based on a literature review a significant number of articles have been published on Ebeiedine (PMID: 28842340) (PMID: 28901111) (PMID: 36070500) (PMID: 26926170).

Structure

MOL 3D MOL SDF PDB SMILES InChI


  Mrv1652309052203222D          

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M  END

     RDKit          3D

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M  END


  Mrv1652309052203222D          

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 29 30  1  0  0  0  0
  2 30  1  0  0  0  0
 30 24  1  1  0  0  0
M  END
> <DATABASE_ID>
NP0205447

> <DATABASE_NAME>
NP-MRD

> <SMILES>
C[C@H]1CC[C@H]2C(C)[C@H]3CC[C@@H]4[C@@H](C[C@H]5[C@H]4C[C@@H](O)[C@H]4C[C@@H](O)CC[C@]54C)[C@@H]3CN2C1

> <INCHI_IDENTIFIER>
InChI=1S/C27H45NO2/c1-15-4-7-25-16(2)18-5-6-19-20(22(18)14-28(25)13-15)11-23-21(19)12-26(30)24-10-17(29)8-9-27(23,24)3/h15-26,29-30H,4-14H2,1-3H3/t15-,16?,17-,18+,19+,20+,21-,22+,23-,24+,25-,26+,27+/m0/s1

> <INCHI_KEY>
NEMWYOKGHGSVSC-XVTULVEUSA-N

> <FORMULA>
C27H45NO2

> <MOLECULAR_WEIGHT>
415.662

> <EXACT_MASS>
415.345029693

> <JCHEM_ACCEPTOR_COUNT>
3

> <JCHEM_ATOM_COUNT>
75

> <JCHEM_AVERAGE_POLARIZABILITY>
51.802005480308395

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
2

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
(1R,2S,6S,9S,11S,14S,15S,17R,18S,20S,23R,24S)-6,10,23-trimethyl-4-azahexacyclo[12.11.0.0^{2,11}.0^{4,9}.0^{15,24}.0^{18,23}]pentacosane-17,20-diol

> <JCHEM_LOGP>
3.9163617926666667

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
6

> <JCHEM_PHYSIOLOGICAL_CHARGE>
1

> <JCHEM_PKA>
15.420144234082017

> <JCHEM_PKA_STRONGEST_ACIDIC>
14.751598110791939

> <JCHEM_PKA_STRONGEST_BASIC>
8.94785508177662

> <JCHEM_POLAR_SURFACE_AREA>
43.7

> <JCHEM_REFRACTIVITY>
121.93259999999998

> <JCHEM_ROTATABLE_BOND_COUNT>
0

> <JCHEM_RULE_OF_FIVE>
1

> <JCHEM_TRADITIONAL_IUPAC>
(1R,2S,6S,9S,11S,14S,15S,17R,18S,20S,23R,24S)-6,10,23-trimethyl-4-azahexacyclo[12.11.0.0^{2,11}.0^{4,9}.0^{15,24}.0^{18,23}]pentacosane-17,20-diol

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 05-SEP-22   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   05-SEP-22         0                                  
HETATM    1  C   UNK     0       1.939   4.799   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0       2.763   3.498   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0       4.302   3.562   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0       5.016   4.926   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0       6.555   4.989   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0       7.379   3.688   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0       8.897   3.430   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0      10.105   4.385   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0      11.536   3.817   0.000  0.00  0.00           C+0
HETATM   10  O   UNK     0      12.744   4.773   0.000  0.00  0.00           O+0
HETATM   11  C   UNK     0      11.760   2.294   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0      13.191   1.726   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0      13.415   0.202   0.000  0.00  0.00           C+0
HETATM   14  O   UNK     0      14.846  -0.366   0.000  0.00  0.00           O+0
HETATM   15  C   UNK     0      12.207  -0.754   0.000  0.00  0.00           C+0
HETATM   16  C   UNK     0      10.776  -0.186   0.000  0.00  0.00           C+0
HETATM   17  C   UNK     0      10.552   1.338   0.000  0.00  0.00           C+0
HETATM   18  C   UNK     0       9.345   0.383   0.000  0.00  0.00           C+0
HETATM   19  C   UNK     0       9.121   1.906   0.000  0.00  0.00           C+0
HETATM   20  C   UNK     0       7.741   1.223   0.000  0.00  0.00           C+0
HETATM   21  C   UNK     0       6.664   2.324   0.000  0.00  0.00           C+0
HETATM   22  C   UNK     0       5.126   2.261   0.000  0.00  0.00           C+0
HETATM   23  C   UNK     0       4.411   0.896   0.000  0.00  0.00           C+0
HETATM   24  N   UNK     0       2.872   0.833   0.000  0.00  0.00           N+0
HETATM   25  C   UNK     0       2.158  -0.531   0.000  0.00  0.00           C+0
HETATM   26  C   UNK     0       0.619  -0.594   0.000  0.00  0.00           C+0
HETATM   27  C   UNK     0      -0.096  -1.958   0.000  0.00  0.00           C+0
HETATM   28  C   UNK     0      -0.205   0.707   0.000  0.00  0.00           C+0
HETATM   29  C   UNK     0       0.510   2.071   0.000  0.00  0.00           C+0
HETATM   30  C   UNK     0       2.048   2.134   0.000  0.00  0.00           C+0
CONECT    1    2                                                            
CONECT    2    1    3   30                                                  
CONECT    3    2    4   22                                                  
CONECT    4    3    5                                                       
CONECT    5    4    6                                                       
CONECT    6    5    7   21                                                  
CONECT    7    6    8   19                                                  
CONECT    8    7    9                                                       
CONECT    9    8   10   11                                                  
CONECT   10    9                                                            
CONECT   11    9   12   17                                                  
CONECT   12   11   13                                                       
CONECT   13   12   14   15                                                  
CONECT   14   13                                                            
CONECT   15   13   16                                                       
CONECT   16   15   17                                                       
CONECT   17   16   11   18   19                                             
CONECT   18   17                                                            
CONECT   19   17    7   20                                                  
CONECT   20   19   21                                                       
CONECT   21   20    6   22                                                  
CONECT   22   21    3   23                                                  
CONECT   23   22   24                                                       
CONECT   24   23   25   30                                                  
CONECT   25   24   26                                                       
CONECT   26   25   27   28                                                  
CONECT   27   26                                                            
CONECT   28   26   29                                                       
CONECT   29   28   30                                                       
CONECT   30   29    2   24                                                  
MASTER        0    0    0    0    0    0    0    0   30    0   70    0
END

View in JSmol

Synonyms

Not Available

Chemical Formula

C₂₇H₄₅NO₂

Average Mass

415.6620 Da

Monoisotopic Mass

415.34503 Da

IUPAC Name

Not Available

Traditional Name

Not Available

CAS Registry Number

Not Available

SMILES

C[C@H]1CC[C@H]2C(C)[C@H]3CC[C@@H]4[C@@H](C[C@H]5[C@H]4C[C@@H](O)[C@H]4C[C@@H](O)CC[C@]54C)[C@@H]3CN2C1

InChI Identifier

InChI=1S/C27H45NO2/c1-15-4-7-25-16(2)18-5-6-19-20(22(18)14-28(25)13-15)11-23-21(19)12-26(30)24-10-17(29)8-9-27(23,24)3/h15-26,29-30H,4-14H2,1-3H3/t15-,16?,17-,18+,19+,20+,21-,22+,23-,24+,25-,26+,27+/m0/s1

InChI Key

NEMWYOKGHGSVSC-XVTULVEUSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Fritillaria anhuiensis	LOTUS Database	35616633
Fritillaria cirrhosa	LOTUS Database	35616633
Fritillaria thunbergii	LOTUS Database	35616633

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as cerveratrum-type alkaloids. These are steroidal alkaloids containing the cevane (23-methyl-4- azahexacyclo[12.11.0.0^{2,11}.0^{4,9}.0^{15,24}.0^{18,23}]Pentacosane) moiety, which is a six ring system. Cerveratrum alkaloids have 7-9 oxygen atoms and occur as free alkamines or esters of simple aliphatic or aromatic acids.

Kingdom

Organic compounds

Super Class

Lipids and lipid-like molecules

Class

Steroids and steroid derivatives

Sub Class

Steroidal alkaloids

Direct Parent

Cerveratrum-type alkaloids

Alternative Parents

Substituents

Cerveratrum-type alkaloid
Azasteroid
Quinolizidine
Alkaloid or derivatives
Piperidine
Cyclic alcohol
Tertiary aliphatic amine
Tertiary amine
Secondary alcohol
Azacycle
Organoheterocyclic compound
Organic nitrogen compound
Organic oxygen compound
Organopnictogen compound
Hydrocarbon derivative
Organooxygen compound
Organonitrogen compound
Amine
Alcohol
Aliphatic heteropolycyclic compound

Molecular Framework

Aliphatic heteropolycyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

C00028228

Chemspider ID

Not Available

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

101324888

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

Wu X, Chan SW, Ma J, Li P, Shaw PC, Lin G: Investigation of association of chemical profiles with the tracheobronchial relaxant activity of Chinese medicinal herb Beimu derived from various Fritillaria species. J Ethnopharmacol. 2018 Jan 10;210:39-46. doi: 10.1016/j.jep.2017.08.027. Epub 2017 Aug 31. [PubMed:28842340 ]
Cui MC, Zhang JY, Chen SJ, Jiang HL, Zhou HB, Ling QZ: [Identification of alkaloids and flavonoids in all parts of Fritillaria thunbergii using LC-LTQ-Orbitrap MSn]. Zhongguo Zhong Yao Za Zhi. 2016 Jun;41(11):2124-2130. doi: 10.4268/cjcmm20161124. [PubMed:28901111 ]
Authors unspecified: Thalidomide. 2012. [PubMed:36070501 ]
Authors unspecified: Lenalidomide. 2012. [PubMed:36070500 ]
Kim EJ, Yoon YP, Woo KW, Kim JH, Min SY, Lee HJ, Lee SK, Hong JH, Lee KR, Lee CJ: Verticine, ebeiedine and suchengbeisine isolated from the bulbs of Fritillaria thunbergii Miq. inhibited the gene expression and production of MUC5AC mucin from human airway epithelial cells. Phytomedicine. 2016 Feb 15;23(2):95-104. doi: 10.1016/j.phymed.2015.12.016. Epub 2016 Jan 14. [PubMed:26926170 ]
LOTUS database [Link]

Showing NP-Card for (1r,2s,6s,9s,11s,14s,15s,17r,18s,20s,23r,24s)-6,10,23-trimethyl-4-azahexacyclo[12.11.0.0²,¹¹.0⁴,⁹.0¹⁵,²⁴.0¹⁸,²³]pentacosane-17,20-diol (NP0205447)

MOL for NP0205447 ((1r,2s,6s,9s,11s,14s,15s,17r,18s,20s,23r,24s)-6,10,23-trimethyl-4-azahexacyclo[12.11.0.0²,¹¹.0⁴,⁹.0¹⁵,²⁴.0¹⁸,²³]pentacosane-17,20-diol)

3D MOL for NP0205447 ((1r,2s,6s,9s,11s,14s,15s,17r,18s,20s,23r,24s)-6,10,23-trimethyl-4-azahexacyclo[12.11.0.0²,¹¹.0⁴,⁹.0¹⁵,²⁴.0¹⁸,²³]pentacosane-17,20-diol)

3D SDF for NP0205447 ((1r,2s,6s,9s,11s,14s,15s,17r,18s,20s,23r,24s)-6,10,23-trimethyl-4-azahexacyclo[12.11.0.0²,¹¹.0⁴,⁹.0¹⁵,²⁴.0¹⁸,²³]pentacosane-17,20-diol)

3D-SDF for NP0205447 ((1r,2s,6s,9s,11s,14s,15s,17r,18s,20s,23r,24s)-6,10,23-trimethyl-4-azahexacyclo[12.11.0.0²,¹¹.0⁴,⁹.0¹⁵,²⁴.0¹⁸,²³]pentacosane-17,20-diol)

PDB for NP0205447 ((1r,2s,6s,9s,11s,14s,15s,17r,18s,20s,23r,24s)-6,10,23-trimethyl-4-azahexacyclo[12.11.0.0²,¹¹.0⁴,⁹.0¹⁵,²⁴.0¹⁸,²³]pentacosane-17,20-diol)

3D PDB for NP0205447 ((1r,2s,6s,9s,11s,14s,15s,17r,18s,20s,23r,24s)-6,10,23-trimethyl-4-azahexacyclo[12.11.0.0²,¹¹.0⁴,⁹.0¹⁵,²⁴.0¹⁸,²³]pentacosane-17,20-diol)

SMILES for NP0205447 ((1r,2s,6s,9s,11s,14s,15s,17r,18s,20s,23r,24s)-6,10,23-trimethyl-4-azahexacyclo[12.11.0.0²,¹¹.0⁴,⁹.0¹⁵,²⁴.0¹⁸,²³]pentacosane-17,20-diol)

INCHI for NP0205447 ((1r,2s,6s,9s,11s,14s,15s,17r,18s,20s,23r,24s)-6,10,23-trimethyl-4-azahexacyclo[12.11.0.0²,¹¹.0⁴,⁹.0¹⁵,²⁴.0¹⁸,²³]pentacosane-17,20-diol)

Structure for NP0205447 ((1r,2s,6s,9s,11s,14s,15s,17r,18s,20s,23r,24s)-6,10,23-trimethyl-4-azahexacyclo[12.11.0.0²,¹¹.0⁴,⁹.0¹⁵,²⁴.0¹⁸,²³]pentacosane-17,20-diol)

3D Structure for NP0205447 ((1r,2s,6s,9s,11s,14s,15s,17r,18s,20s,23r,24s)-6,10,23-trimethyl-4-azahexacyclo[12.11.0.0²,¹¹.0⁴,⁹.0¹⁵,²⁴.0¹⁸,²³]pentacosane-17,20-diol)