NP-MRD: Showing NP-Card for (2s,3s)-n-[(3r,4s,7s,10e)-5,8-dihydroxy-3-isopropyl-7-(2-methylpropyl)-2-oxa-6,9-diazabicyclo[10.2.2]hexadeca-1(14),5,8,10,12,15-hexaen-4-yl]-2-(dimethylamino)-3-methylpentanimidic acid (NP0204603)

Jump To Section:

Identification Spectra BioTaxonomy ChemoTaxonomy Physical properties Links References XML

Record Information

Version

2.0

Created at

2022-09-05 00:18:27 UTC

Updated at

2022-09-05 00:18:27 UTC

NP-MRD ID

NP0204603

Secondary Accession Numbers

None

Natural Product Identification

Common Name

(2s,3s)-n-[(3r,4s,7s,10e)-5,8-dihydroxy-3-isopropyl-7-(2-methylpropyl)-2-oxa-6,9-diazabicyclo[10.2.2]hexadeca-1(14),5,8,10,12,15-hexaen-4-yl]-2-(dimethylamino)-3-methylpentanimidic acid

Description

(2S,3S)-N-[(3R,4S,7S,10Z)-5,8-dihydroxy-7-(2-methylpropyl)-3-(propan-2-yl)-2-oxa-6,9-diazabicyclo[10.2.2]Hexadeca-1(14),5,8,10,12,15-hexaen-4-yl]-2-(dimethylamino)-3-methylpentanimidic acid belongs to the class of organic compounds known as cyclic peptides. Cyclic peptides are compounds containing a cyclic moiety bearing a peptide backbone. (2s,3s)-n-[(3r,4s,7s,10e)-5,8-dihydroxy-3-isopropyl-7-(2-methylpropyl)-2-oxa-6,9-diazabicyclo[10.2.2]hexadeca-1(14),5,8,10,12,15-hexaen-4-yl]-2-(dimethylamino)-3-methylpentanimidic acid is found in Discaria americana and Paliurus spina-christi. Based on a literature review very few articles have been published on (2S,3S)-N-[(3R,4S,7S,10Z)-5,8-dihydroxy-7-(2-methylpropyl)-3-(propan-2-yl)-2-oxa-6,9-diazabicyclo[10.2.2]Hexadeca-1(14),5,8,10,12,15-hexaen-4-yl]-2-(dimethylamino)-3-methylpentanimidic acid.

Structure

MOL 3D MOL SDF PDB SMILES InChI


  Mrv1652309052202182D          

 36 37  0  0  1  0            999 V2000
   -2.0842   -1.2721    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3697   -1.6846    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3697   -2.5096    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
   -2.0842   -2.9221    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6552   -2.9221    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   -0.6552   -3.7471    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0593   -4.1596    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3697   -4.1596    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3697   -4.9846    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
   -0.5322   -5.2133    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1278   -4.4942    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.0895   -5.8016    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    0.3789   -6.5827    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    1.1966   -6.4731    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.5105   -5.7101    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.0067   -5.0568    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.3282   -5.6005    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.3056   -7.4117    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.0912   -7.6636    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1175   -8.1299    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8147   -8.6001    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6488   -8.7478    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4319   -8.3738    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.2526   -8.1730    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.4839   -7.3771    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9632   -6.7182    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1702   -6.9378    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9140   -7.7199    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7468   -5.8789    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2048   -5.2126    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
   -2.6550   -4.5213    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2814   -3.7857    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.4788   -4.5655    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0593   -2.5096    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    0.0593   -1.6846    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7737   -2.9221    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  1  0  0  0  0
  3  4  1  1  0  0  0
  3  5  1  0  0  0  0
  5  6  1  0  0  0  0
  6  7  1  4  0  0  0
  6  8  2  0  0  0  0
  9  8  1  6  0  0  0
  9 10  1  0  0  0  0
 10 11  1  4  0  0  0
 10 12  2  0  0  0  0
 12 13  1  0  0  0  0
 13 14  1  1  0  0  0
 14 15  1  0  0  0  0
 15 16  1  0  0  0  0
 15 17  1  0  0  0  0
 13 18  1  0  0  0  0
 18 19  1  0  0  0  0
 18 20  2  0  0  0  0
 20 21  1  4  0  0  0
 21 22  2  0  0  0  0
 22 23  1  0  0  0  0
 23 24  2  0  0  0  0
 24 25  1  0  0  0  0
 25 26  2  0  0  0  0
 26 27  1  0  0  0  0
 27 28  2  0  0  0  0
 23 28  1  0  0  0  0
 26 29  1  0  0  0  0
 29 30  1  0  0  0  0
  9 30  1  0  0  0  0
 30 31  1  6  0  0  0
 31 32  1  0  0  0  0
 31 33  1  0  0  0  0
  5 34  1  6  0  0  0
 34 35  1  0  0  0  0
 34 36  1  0  0  0  0
M  END

     RDKit          3D

 80 81  0  0  0  0  0  0  0  0999 V2000
    6.2045    0.1938    1.5323 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.8361    0.8462    1.3381 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.2294    0.3495    0.0385 C   0  0  2  0  0  0  0  0  0  0  0  0
    5.1366    0.7097   -1.0872 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.7889    0.7632   -0.1387 C   0  0  1  0  0  0  0  0  0  0  0  0
    1.8769    0.1543    0.8460 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.9995    0.6499    2.1664 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.0054   -0.7451    0.6795 N   0  0  0  0  0  0  0  0  0  0  0  0
    0.6278   -1.4565   -0.5132 C   0  0  2  0  0  0  0  0  0  0  0  0
   -0.5710   -0.7925   -1.1688 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4541   -0.8725   -2.6032 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5142   -0.2577   -0.6846 N   0  0  0  0  0  0  0  0  0  0  0  0
   -2.6121    0.4722   -0.3088 C   0  0  1  0  0  0  0  0  0  0  0  0
   -2.1898    1.9132   -0.1102 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.1727    2.8565    0.4540 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.4304    3.1137   -0.2809 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4241    4.2066    0.5792 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.7676    0.4713   -1.2603 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.3384    0.7199   -2.5914 O   0  0  0  0  0  0  0  0  0  0  0  0
   -4.9019    0.2887   -0.9687 N   0  0  0  0  0  0  0  0  0  0  0  0
   -6.0587   -0.3302   -0.6371 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.0222   -1.7148   -0.6103 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.6554   -2.3165   -0.5591 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.9591   -2.5247    0.6191 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.6082   -2.9680    0.6695 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9349   -3.2097   -0.4904 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.5926   -3.0242   -1.6806 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.9455   -2.5793   -1.7047 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5942   -3.6293   -0.4359 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.5814   -2.9254   -0.4298 C   0  0  2  0  0  0  0  0  0  0  0  0
    1.3609   -3.4880    0.7810 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.8044   -3.1520    0.7602 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.6750   -3.2229    2.0790 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.6810    2.1834   -0.0925 N   0  0  0  0  0  0  0  0  0  0  0  0
    3.3161    2.9430   -1.1102 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.3546    2.6953    0.0958 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.9511    0.5810    0.8110 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.1151   -0.9204    1.5007 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.5505    0.4430    2.5488 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.2538    0.5536    2.2230 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.0193    1.9311    1.3184 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.2120   -0.7857    0.1134 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.7552   -0.2290   -1.3249 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.6578    0.9900   -2.0304 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.9589    1.4283   -0.7919 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.4608    0.4879   -1.1965 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.1608    0.7174    2.7250 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.5287   -1.2433   -1.2088 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.1560   -0.2644   -3.0955 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.0637    0.1555    0.6921 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8637    2.3260   -1.1121 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3008    1.8707    0.5758 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.3759    2.5909    1.5417 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.3454    2.6860    0.1849 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.3056    2.9363   -1.3466 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.6330    4.2401   -0.2189 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3676    4.0172    0.8546 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4467    4.6639   -0.4277 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9575    4.8386    1.2964 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.7025    1.4736   -3.1391 H   0  0  0  0  0  0  0  0  0  0  0  0
   -7.0311    0.0576   -0.3750 H   0  0  0  0  0  0  0  0  0  0  0  0
   -7.0466   -2.1364   -0.6272 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.2589   -2.4073    1.7047 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2280   -3.0947    1.7315 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1695   -3.2051   -2.7145 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.2006   -2.5226   -2.8101 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.1912   -3.3918   -1.3008 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.2947   -4.6073    0.6182 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.1026   -2.8642   -0.2871 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.4628   -4.0490    0.9686 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.0494   -2.3998    1.5109 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0021   -2.3450    2.0778 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.0175   -4.0859    2.3986 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.4104   -3.1330    2.9337 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.3881    3.1150   -1.0190 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.9787    2.6015   -2.1166 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.8768    4.0021   -1.0123 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.0042    2.4699    1.1043 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.3590    3.8160    0.0159 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.6528    2.3703   -0.7123 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  3  4  1  0
  3  5  1  0
  5 34  1  0
 34 35  1  0
 34 36  1  0
  5  6  1  0
  6  7  1  0
  6  8  2  0
  8  9  1  0
  9 30  1  0
 30 29  1  0
 29 26  1  0
 26 25  2  0
 25 24  1  0
 24 23  2  0
 23 28  1  0
 28 27  2  0
 23 22  1  0
 22 21  2  0
 21 20  1  0
 20 18  2  0
 18 19  1  0
 18 13  1  0
 13 14  1  0
 14 15  1  0
 15 16  1  0
 15 17  1  0
 13 12  1  0
 12 10  2  0
 10 11  1  0
 30 31  1  0
 31 32  1  0
 31 33  1  0
 10  9  1  0
 27 26  1  0
  1 37  1  0
  1 38  1  0
  1 39  1  0
  2 40  1  0
  2 41  1  0
  3 42  1  1
  4 43  1  0
  4 44  1  0
  4 45  1  0
  5 46  1  6
 35 75  1  0
 35 76  1  0
 35 77  1  0
 36 78  1  0
 36 79  1  0
 36 80  1  0
  7 47  1  0
  9 48  1  6
 30 67  1  6
 25 64  1  0
 24 63  1  0
 28 66  1  0
 27 65  1  0
 22 62  1  0
 21 61  1  0
 19 60  1  0
 13 50  1  1
 14 51  1  0
 14 52  1  0
 15 53  1  0
 16 54  1  0
 16 55  1  0
 16 56  1  0
 17 57  1  0
 17 58  1  0
 17 59  1  0
 11 49  1  0
 31 68  1  0
 32 69  1  0
 32 70  1  0
 32 71  1  0
 33 72  1  0
 33 73  1  0
 33 74  1  0
M  END


  Mrv1652309052202182D          

 36 37  0  0  1  0            999 V2000
   -2.0842   -1.2721    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3697   -1.6846    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3697   -2.5096    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
   -2.0842   -2.9221    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6552   -2.9221    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   -0.6552   -3.7471    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0593   -4.1596    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3697   -4.1596    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3697   -4.9846    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
   -0.5322   -5.2133    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1278   -4.4942    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.0895   -5.8016    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    0.3789   -6.5827    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    1.1966   -6.4731    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.5105   -5.7101    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.0067   -5.0568    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.3282   -5.6005    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.3056   -7.4117    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.0912   -7.6636    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1175   -8.1299    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8147   -8.6001    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6488   -8.7478    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4319   -8.3738    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.2526   -8.1730    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.4839   -7.3771    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9632   -6.7182    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1702   -6.9378    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9140   -7.7199    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7468   -5.8789    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2048   -5.2126    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
   -2.6550   -4.5213    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2814   -3.7857    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.4788   -4.5655    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0593   -2.5096    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    0.0593   -1.6846    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7737   -2.9221    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  1  0  0  0  0
  3  4  1  1  0  0  0
  3  5  1  0  0  0  0
  5  6  1  0  0  0  0
  6  7  1  4  0  0  0
  6  8  2  0  0  0  0
  9  8  1  6  0  0  0
  9 10  1  0  0  0  0
 10 11  1  4  0  0  0
 10 12  2  0  0  0  0
 12 13  1  0  0  0  0
 13 14  1  1  0  0  0
 14 15  1  0  0  0  0
 15 16  1  0  0  0  0
 15 17  1  0  0  0  0
 13 18  1  0  0  0  0
 18 19  1  0  0  0  0
 18 20  2  0  0  0  0
 20 21  1  4  0  0  0
 21 22  2  0  0  0  0
 22 23  1  0  0  0  0
 23 24  2  0  0  0  0
 24 25  1  0  0  0  0
 25 26  2  0  0  0  0
 26 27  1  0  0  0  0
 27 28  2  0  0  0  0
 23 28  1  0  0  0  0
 26 29  1  0  0  0  0
 29 30  1  0  0  0  0
  9 30  1  0  0  0  0
 30 31  1  6  0  0  0
 31 32  1  0  0  0  0
 31 33  1  0  0  0  0
  5 34  1  6  0  0  0
 34 35  1  0  0  0  0
 34 36  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0204603

> <DATABASE_NAME>
NP-MRD

> <SMILES>
CC[C@H](C)[C@H](N(C)C)C(O)=N[C@H]1[C@H](OC2=CC=C(C=C2)\C=C/N=C(O)[C@H](CC(C)C)N=C1O)C(C)C

> <INCHI_IDENTIFIER>
InChI=1S/C28H44N4O4/c1-9-19(6)24(32(7)8)28(35)31-23-25(18(4)5)36-21-12-10-20(11-13-21)14-15-29-26(33)22(16-17(2)3)30-27(23)34/h10-15,17-19,22-25H,9,16H2,1-8H3,(H,29,33)(H,30,34)(H,31,35)/b15-14-/t19-,22-,23-,24-,25+/m0/s1

> <INCHI_KEY>
ULQXKOIGVXLOOC-TYCDZCMWSA-N

> <FORMULA>
C28H44N4O4

> <MOLECULAR_WEIGHT>
500.684

> <EXACT_MASS>
500.336255913

> <JCHEM_ACCEPTOR_COUNT>
8

> <JCHEM_ATOM_COUNT>
80

> <JCHEM_AVERAGE_POLARIZABILITY>
55.340808059043084

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
3

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
(2S,3S)-N-[(3R,4S,7S,10E)-5,8-dihydroxy-7-(2-methylpropyl)-3-(propan-2-yl)-2-oxa-6,9-diazabicyclo[10.2.2]hexadeca-1(14),5,8,10,12,15-hexaen-4-yl]-2-(dimethylamino)-3-methylpentanimidic acid

> <JCHEM_LOGP>
-1.636549942229811

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
2

> <JCHEM_PHYSIOLOGICAL_CHARGE>
1

> <JCHEM_PKA>
-4.320950010090244

> <JCHEM_PKA_STRONGEST_ACIDIC>
-9.278936560772163

> <JCHEM_PKA_STRONGEST_BASIC>
14.968848383658331

> <JCHEM_POLAR_SURFACE_AREA>
110.24000000000001

> <JCHEM_REFRACTIVITY>
143.3363

> <JCHEM_ROTATABLE_BOND_COUNT>
8

> <JCHEM_RULE_OF_FIVE>
0

> <JCHEM_TRADITIONAL_IUPAC>
(2S,3S)-N-[(3R,4S,7S,10E)-5,8-dihydroxy-3-isopropyl-7-(2-methylpropyl)-2-oxa-6,9-diazabicyclo[10.2.2]hexadeca-1(14),5,8,10,12,15-hexaen-4-yl]-2-(dimethylamino)-3-methylpentanimidic acid

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 05-SEP-22   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   05-SEP-22         0                                  
HETATM    1  C   UNK     0      -3.890  -2.375   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0      -2.557  -3.145   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0      -2.557  -4.685   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0      -3.890  -5.455   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0      -1.223  -5.455   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0      -1.223  -6.995   0.000  0.00  0.00           C+0
HETATM    7  O   UNK     0       0.111  -7.765   0.000  0.00  0.00           O+0
HETATM    8  N   UNK     0      -2.557  -7.765   0.000  0.00  0.00           N+0
HETATM    9  C   UNK     0      -2.557  -9.305   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0      -0.993  -9.731   0.000  0.00  0.00           C+0
HETATM   11  O   UNK     0      -0.239  -8.389   0.000  0.00  0.00           O+0
HETATM   12  N   UNK     0       0.167 -10.830   0.000  0.00  0.00           N+0
HETATM   13  C   UNK     0       0.707 -12.288   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0       2.234 -12.083   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0       2.820 -10.659   0.000  0.00  0.00           C+0
HETATM   16  C   UNK     0       1.879  -9.439   0.000  0.00  0.00           C+0
HETATM   17  C   UNK     0       4.346 -10.454   0.000  0.00  0.00           C+0
HETATM   18  C   UNK     0       0.570 -13.835   0.000  0.00  0.00           C+0
HETATM   19  O   UNK     0       2.037 -14.305   0.000  0.00  0.00           O+0
HETATM   20  N   UNK     0      -0.219 -15.176   0.000  0.00  0.00           N+0
HETATM   21  C   UNK     0      -1.521 -16.053   0.000  0.00  0.00           C+0
HETATM   22  C   UNK     0      -3.078 -16.329   0.000  0.00  0.00           C+0
HETATM   23  C   UNK     0      -4.540 -15.631   0.000  0.00  0.00           C+0
HETATM   24  C   UNK     0      -6.071 -15.256   0.000  0.00  0.00           C+0
HETATM   25  C   UNK     0      -6.503 -13.771   0.000  0.00  0.00           C+0
HETATM   26  C   UNK     0      -5.531 -12.541   0.000  0.00  0.00           C+0
HETATM   27  C   UNK     0      -4.051 -12.951   0.000  0.00  0.00           C+0
HETATM   28  C   UNK     0      -3.573 -14.410   0.000  0.00  0.00           C+0
HETATM   29  O   UNK     0      -5.127 -10.974   0.000  0.00  0.00           O+0
HETATM   30  C   UNK     0      -4.116  -9.730   0.000  0.00  0.00           C+0
HETATM   31  C   UNK     0      -4.956  -8.440   0.000  0.00  0.00           C+0
HETATM   32  C   UNK     0      -4.259  -7.067   0.000  0.00  0.00           C+0
HETATM   33  C   UNK     0      -6.494  -8.522   0.000  0.00  0.00           C+0
HETATM   34  N   UNK     0       0.111  -4.685   0.000  0.00  0.00           N+0
HETATM   35  C   UNK     0       0.111  -3.145   0.000  0.00  0.00           C+0
HETATM   36  C   UNK     0       1.444  -5.455   0.000  0.00  0.00           C+0
CONECT    1    2                                                            
CONECT    2    1    3                                                       
CONECT    3    2    4    5                                                  
CONECT    4    3                                                            
CONECT    5    3    6   34                                                  
CONECT    6    5    7    8                                                  
CONECT    7    6                                                            
CONECT    8    6    9                                                       
CONECT    9    8   10   30                                                  
CONECT   10    9   11   12                                                  
CONECT   11   10                                                            
CONECT   12   10   13                                                       
CONECT   13   12   14   18                                                  
CONECT   14   13   15                                                       
CONECT   15   14   16   17                                                  
CONECT   16   15                                                            
CONECT   17   15                                                            
CONECT   18   13   19   20                                                  
CONECT   19   18                                                            
CONECT   20   18   21                                                       
CONECT   21   20   22                                                       
CONECT   22   21   23                                                       
CONECT   23   22   24   28                                                  
CONECT   24   23   25                                                       
CONECT   25   24   26                                                       
CONECT   26   25   27   29                                                  
CONECT   27   26   28                                                       
CONECT   28   27   23                                                       
CONECT   29   26   30                                                       
CONECT   30   29    9   31                                                  
CONECT   31   30   32   33                                                  
CONECT   32   31                                                            
CONECT   33   31                                                            
CONECT   34    5   35   36                                                  
CONECT   35   34                                                            
CONECT   36   34                                                            
MASTER        0    0    0    0    0    0    0    0   36    0   74    0
END

View in JSmol

Synonyms

Value	Source
(2S,3S)-N-[(3R,4S,7S,10Z)-5,8-Dihydroxy-7-(2-methylpropyl)-3-(propan-2-yl)-2-oxa-6,9-diazabicyclo[10.2.2]hexadeca-1(14),5,8,10,12,15-hexaen-4-yl]-2-(dimethylamino)-3-methylpentanimidate	Generator

Chemical Formula

C₂₈H₄₄N₄O₄

Average Mass

500.6840 Da

Monoisotopic Mass

500.33626 Da

IUPAC Name

(2S,3S)-N-[(3R,4S,7S,10E)-5,8-dihydroxy-7-(2-methylpropyl)-3-(propan-2-yl)-2-oxa-6,9-diazabicyclo[10.2.2]hexadeca-1(14),5,8,10,12,15-hexaen-4-yl]-2-(dimethylamino)-3-methylpentanimidic acid

Traditional Name

(2S,3S)-N-[(3R,4S,7S,10E)-5,8-dihydroxy-3-isopropyl-7-(2-methylpropyl)-2-oxa-6,9-diazabicyclo[10.2.2]hexadeca-1(14),5,8,10,12,15-hexaen-4-yl]-2-(dimethylamino)-3-methylpentanimidic acid

CAS Registry Number

Not Available

SMILES

CC[C@H](C)[C@H](N(C)C)C(O)=N[C@H]1[C@H](OC2=CC=C(C=C2)\C=C/N=C(O)[C@H](CC(C)C)N=C1O)C(C)C

InChI Identifier

InChI=1S/C28H44N4O4/c1-9-19(6)24(32(7)8)28(35)31-23-25(18(4)5)36-21-12-10-20(11-13-21)14-15-29-26(33)22(16-17(2)3)30-27(23)34/h10-15,17-19,22-25H,9,16H2,1-8H3,(H,29,33)(H,30,34)(H,31,35)/b15-14-/t19-,22-,23-,24-,25+/m0/s1

InChI Key

ULQXKOIGVXLOOC-TYCDZCMWSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Discaria americana	LOTUS Database	35616633
Ziziphus spinosa	LOTUS Database	35616633

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as cyclic peptides. Cyclic peptides are compounds containing a cyclic moiety bearing a peptide backbone.

Kingdom

Organic compounds

Super Class

Organic acids and derivatives

Class

Carboxylic acids and derivatives

Sub Class

Amino acids, peptides, and analogues

Direct Parent

Cyclic peptides

Alternative Parents

Substituents

Cyclic alpha peptide
Alkyl aryl ether
Benzenoid
Cyclic carboximidic acid
Tertiary amine
Tertiary aliphatic amine
Carboximidic acid
Carboximidic acid derivative
Ether
Oxacycle
Propargyl-type 1,3-dipolar organic compound
Organic 1,3-dipolar compound
Azacycle
Organoheterocyclic compound
Organooxygen compound
Hydrocarbon derivative
Organopnictogen compound
Organic nitrogen compound
Amine
Organic oxygen compound
Organonitrogen compound
Aromatic heteropolycyclic compound

Molecular Framework

Aromatic heteropolycyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	-1.6	ChemAxon
pKa (Strongest Acidic)	-9.3	ChemAxon
pKa (Strongest Basic)	14.97	ChemAxon
Physiological Charge	1	ChemAxon
Hydrogen Acceptor Count	8	ChemAxon
Hydrogen Donor Count	3	ChemAxon
Polar Surface Area	110.24 Å²	ChemAxon
Rotatable Bond Count	8	ChemAxon
Refractivity	143.34 m³·mol⁻¹	ChemAxon
Polarizability	55.34 Å³	ChemAxon
Number of Rings	2	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	No	ChemAxon
Ghose Filter	No	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

Not Available

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

122362189

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

LOTUS database [Link]

Showing NP-Card for (2s,3s)-n-[(3r,4s,7s,10e)-5,8-dihydroxy-3-isopropyl-7-(2-methylpropyl)-2-oxa-6,9-diazabicyclo[10.2.2]hexadeca-1(14),5,8,10,12,15-hexaen-4-yl]-2-(dimethylamino)-3-methylpentanimidic acid (NP0204603)

MOL for NP0204603 ((2s,3s)-n-[(3r,4s,7s,10e)-5,8-dihydroxy-3-isopropyl-7-(2-methylpropyl)-2-oxa-6,9-diazabicyclo[10.2.2]hexadeca-1(14),5,8,10,12,15-hexaen-4-yl]-2-(dimethylamino)-3-methylpentanimidic acid)

3D MOL for NP0204603 ((2s,3s)-n-[(3r,4s,7s,10e)-5,8-dihydroxy-3-isopropyl-7-(2-methylpropyl)-2-oxa-6,9-diazabicyclo[10.2.2]hexadeca-1(14),5,8,10,12,15-hexaen-4-yl]-2-(dimethylamino)-3-methylpentanimidic acid)

3D SDF for NP0204603 ((2s,3s)-n-[(3r,4s,7s,10e)-5,8-dihydroxy-3-isopropyl-7-(2-methylpropyl)-2-oxa-6,9-diazabicyclo[10.2.2]hexadeca-1(14),5,8,10,12,15-hexaen-4-yl]-2-(dimethylamino)-3-methylpentanimidic acid)

3D-SDF for NP0204603 ((2s,3s)-n-[(3r,4s,7s,10e)-5,8-dihydroxy-3-isopropyl-7-(2-methylpropyl)-2-oxa-6,9-diazabicyclo[10.2.2]hexadeca-1(14),5,8,10,12,15-hexaen-4-yl]-2-(dimethylamino)-3-methylpentanimidic acid)

PDB for NP0204603 ((2s,3s)-n-[(3r,4s,7s,10e)-5,8-dihydroxy-3-isopropyl-7-(2-methylpropyl)-2-oxa-6,9-diazabicyclo[10.2.2]hexadeca-1(14),5,8,10,12,15-hexaen-4-yl]-2-(dimethylamino)-3-methylpentanimidic acid)

3D PDB for NP0204603 ((2s,3s)-n-[(3r,4s,7s,10e)-5,8-dihydroxy-3-isopropyl-7-(2-methylpropyl)-2-oxa-6,9-diazabicyclo[10.2.2]hexadeca-1(14),5,8,10,12,15-hexaen-4-yl]-2-(dimethylamino)-3-methylpentanimidic acid)

SMILES for NP0204603 ((2s,3s)-n-[(3r,4s,7s,10e)-5,8-dihydroxy-3-isopropyl-7-(2-methylpropyl)-2-oxa-6,9-diazabicyclo[10.2.2]hexadeca-1(14),5,8,10,12,15-hexaen-4-yl]-2-(dimethylamino)-3-methylpentanimidic acid)

INCHI for NP0204603 ((2s,3s)-n-[(3r,4s,7s,10e)-5,8-dihydroxy-3-isopropyl-7-(2-methylpropyl)-2-oxa-6,9-diazabicyclo[10.2.2]hexadeca-1(14),5,8,10,12,15-hexaen-4-yl]-2-(dimethylamino)-3-methylpentanimidic acid)

Structure for NP0204603 ((2s,3s)-n-[(3r,4s,7s,10e)-5,8-dihydroxy-3-isopropyl-7-(2-methylpropyl)-2-oxa-6,9-diazabicyclo[10.2.2]hexadeca-1(14),5,8,10,12,15-hexaen-4-yl]-2-(dimethylamino)-3-methylpentanimidic acid)

3D Structure for NP0204603 ((2s,3s)-n-[(3r,4s,7s,10e)-5,8-dihydroxy-3-isopropyl-7-(2-methylpropyl)-2-oxa-6,9-diazabicyclo[10.2.2]hexadeca-1(14),5,8,10,12,15-hexaen-4-yl]-2-(dimethylamino)-3-methylpentanimidic acid)