NP-MRD: Showing NP-Card for methyl (4r)-4-[(2s)-2-hydroxy-6-methylhept-5-en-2-yl]cyclohex-1-ene-1-carboxylate (NP0204347)

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Record Information

Version

2.0

Created at

2022-09-05 00:00:20 UTC

Updated at

2022-09-05 00:00:20 UTC

NP-MRD ID

NP0204347

Secondary Accession Numbers

None

Natural Product Identification

Common Name

methyl (4r)-4-[(2s)-2-hydroxy-6-methylhept-5-en-2-yl]cyclohex-1-ene-1-carboxylate

Description

Bisaborosaol A belongs to the class of organic compounds known as sesquiterpenoids. These are terpenes with three consecutive isoprene units. methyl (4r)-4-[(2s)-2-hydroxy-6-methylhept-5-en-2-yl]cyclohex-1-ene-1-carboxylate is found in Rosa rugosa. methyl (4r)-4-[(2s)-2-hydroxy-6-methylhept-5-en-2-yl]cyclohex-1-ene-1-carboxylate was first documented in 2000 (PMID: 10830519). Based on a literature review very few articles have been published on Bisaborosaol A (PMID: 11676018).

Structure

MOL 3D MOL SDF PDB SMILES InChI

     RDKit          3D

 45 45  0  0  0  0  0  0  0  0999 V2000
    7.0693    0.4293    1.0804 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.7614    0.4778    0.5410 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.6804    0.1226    1.3350 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.9127   -0.2292    2.5076 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.3085    0.1468    0.8527 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.0726    0.5212   -0.3920 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.7135    0.5764   -0.9676 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.8667   -0.3861   -0.2070 C   0  0  2  0  0  0  0  0  0  0  0  0
   -0.5254   -0.5483   -0.7715 C   0  0  1  0  0  0  0  0  0  0  0  0
   -0.4486   -1.0521   -2.1906 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1138   -1.5503    0.0383 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3402    0.6838   -0.6931 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7001    0.4911   -1.2847 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5075   -0.5549   -0.6162 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.6388   -0.2039    0.0006 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.4524   -1.2475    0.6723 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.0870    1.2176    0.0197 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.8592    0.0302    1.2372 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.2351   -0.2549    1.7951 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.2785   -0.5748    1.5241 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.8144    0.5977    0.2652 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.2199    1.2131    1.8228 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.9105    0.7950   -1.0029 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.7019    0.4146   -2.0623 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.3254    1.6123   -0.7510 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.3585   -1.3862   -0.2520 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5625   -0.2061   -2.9295 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.5366   -1.5270   -2.4185 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2169   -1.8412   -2.4047 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5951   -2.3874    0.0134 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3981    1.1129    0.3325 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8413    1.4758   -1.3354 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.2800    1.4431   -1.3346 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.6222    0.1691   -2.3655 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.2316   -1.5941   -0.6187 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.2705   -1.6201    0.0119 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.9397   -0.8885    1.5998 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.7732   -2.0806    0.9519 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.2518    1.8333    0.4146 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.4154    1.5714   -0.9613 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.9275    1.3571    0.7287 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.0762   -0.4396    1.8291 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.7437    1.1515    1.2675 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.3098   -1.3577    1.9233 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.3848    0.1927    2.7941 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  3  4  2  0
  3  5  1  0
  5  6  2  0
  6  7  1  0
  7  8  1  0
  8 18  1  0
 18 19  1  0
  8  9  1  0
  9 10  1  0
  9 11  1  1
  9 12  1  0
 12 13  1  0
 13 14  1  0
 14 15  2  3
 15 16  1  0
 15 17  1  0
 19  5  1  0
  1 20  1  0
  1 21  1  0
  1 22  1  0
  6 23  1  0
  7 24  1  0
  7 25  1  0
  8 26  1  1
 18 42  1  0
 18 43  1  0
 19 44  1  0
 19 45  1  0
 10 27  1  0
 10 28  1  0
 10 29  1  0
 11 30  1  0
 12 31  1  0
 12 32  1  0
 13 33  1  0
 13 34  1  0
 14 35  1  0
 16 36  1  0
 16 37  1  0
 16 38  1  0
 17 39  1  0
 17 40  1  0
 17 41  1  0
M  END


  Mrv1652309052202002D          

 19 19  0  0  1  0            999 V2000
    0.0000    3.3000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0000    2.4750    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.7145    2.0625    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4289    2.4750    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.7145    1.2375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4289    0.8250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4289   -0.0000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7145   -0.4125    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    0.7145   -1.2375    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   -0.1105   -1.2375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.5395   -1.2375    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.7145   -2.0625    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0000   -2.4750    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0000   -3.3000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7145   -3.7125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7145   -4.5375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4289   -3.3000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0000    0.0000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0000    0.8250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  1  0  0  0  0
  3  4  2  0  0  0  0
  3  5  1  0  0  0  0
  5  6  2  0  0  0  0
  6  7  1  0  0  0  0
  7  8  1  0  0  0  0
  8  9  1  6  0  0  0
  9 10  1  6  0  0  0
  9 11  1  6  0  0  0
  9 12  1  0  0  0  0
 12 13  1  0  0  0  0
 13 14  1  0  0  0  0
 14 15  2  0  0  0  0
 15 16  1  0  0  0  0
 15 17  1  0  0  0  0
  8 18  1  0  0  0  0
 18 19  1  0  0  0  0
  5 19  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0204347

> <DATABASE_NAME>
NP-MRD

> <SMILES>
COC(=O)C1=CC[C@@H](CC1)[C@@](C)(O)CCC=C(C)C

> <INCHI_IDENTIFIER>
InChI=1S/C16H26O3/c1-12(2)6-5-11-16(3,18)14-9-7-13(8-10-14)15(17)19-4/h6-7,14,18H,5,8-11H2,1-4H3/t14-,16-/m0/s1

> <INCHI_KEY>
ZOJSSXJDOHFOTI-HOCLYGCPSA-N

> <FORMULA>
C16H26O3

> <MOLECULAR_WEIGHT>
266.381

> <EXACT_MASS>
266.188194697

> <JCHEM_ACCEPTOR_COUNT>
2

> <JCHEM_ATOM_COUNT>
45

> <JCHEM_AVERAGE_POLARIZABILITY>
31.739566250721772

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
1

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
1

> <JCHEM_IUPAC>
methyl (4R)-4-[(2S)-2-hydroxy-6-methylhept-5-en-2-yl]cyclohex-1-ene-1-carboxylate

> <JCHEM_LOGP>
3.4828855009999997

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
1

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA_STRONGEST_BASIC>
-0.4708774916622004

> <JCHEM_POLAR_SURFACE_AREA>
46.53

> <JCHEM_REFRACTIVITY>
78.6738

> <JCHEM_ROTATABLE_BOND_COUNT>
6

> <JCHEM_RULE_OF_FIVE>
1

> <JCHEM_TRADITIONAL_IUPAC>
methyl (4R)-4-[(2S)-2-hydroxy-6-methylhept-5-en-2-yl]cyclohex-1-ene-1-carboxylate

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 05-SEP-22   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   05-SEP-22         0                                  
HETATM    1  C   UNK     0       0.000   6.160   0.000  0.00  0.00           C+0
HETATM    2  O   UNK     0       0.000   4.620   0.000  0.00  0.00           O+0
HETATM    3  C   UNK     0       1.334   3.850   0.000  0.00  0.00           C+0
HETATM    4  O   UNK     0       2.667   4.620   0.000  0.00  0.00           O+0
HETATM    5  C   UNK     0       1.334   2.310   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0       2.667   1.540   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0       2.667  -0.000   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0       1.334  -0.770   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0       1.334  -2.310   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0      -0.206  -2.310   0.000  0.00  0.00           C+0
HETATM   11  O   UNK     0       2.874  -2.310   0.000  0.00  0.00           O+0
HETATM   12  C   UNK     0       1.334  -3.850   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0      -0.000  -4.620   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0      -0.000  -6.160   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0      -1.334  -6.930   0.000  0.00  0.00           C+0
HETATM   16  C   UNK     0      -1.334  -8.470   0.000  0.00  0.00           C+0
HETATM   17  C   UNK     0      -2.667  -6.160   0.000  0.00  0.00           C+0
HETATM   18  C   UNK     0       0.000   0.000   0.000  0.00  0.00           C+0
HETATM   19  C   UNK     0       0.000   1.540   0.000  0.00  0.00           C+0
CONECT    1    2                                                            
CONECT    2    1    3                                                       
CONECT    3    2    4    5                                                  
CONECT    4    3                                                            
CONECT    5    3    6   19                                                  
CONECT    6    5    7                                                       
CONECT    7    6    8                                                       
CONECT    8    7    9   18                                                  
CONECT    9    8   10   11   12                                             
CONECT   10    9                                                            
CONECT   11    9                                                            
CONECT   12    9   13                                                       
CONECT   13   12   14                                                       
CONECT   14   13   15                                                       
CONECT   15   14   16   17                                                  
CONECT   16   15                                                            
CONECT   17   15                                                            
CONECT   18    8   19                                                       
CONECT   19   18    5                                                       
MASTER        0    0    0    0    0    0    0    0   19    0   38    0
END

View in JSmol

Synonyms

Not Available

Chemical Formula

C₁₆H₂₆O₃

Average Mass

266.3810 Da

Monoisotopic Mass

266.18819 Da

IUPAC Name

methyl (4R)-4-[(2S)-2-hydroxy-6-methylhept-5-en-2-yl]cyclohex-1-ene-1-carboxylate

Traditional Name

methyl (4R)-4-[(2S)-2-hydroxy-6-methylhept-5-en-2-yl]cyclohex-1-ene-1-carboxylate

CAS Registry Number

Not Available

SMILES

COC(=O)C1=CC[C@@H](CC1)[C@@](C)(O)CCC=C(C)C

InChI Identifier

InChI=1S/C16H26O3/c1-12(2)6-5-11-16(3,18)14-9-7-13(8-10-14)15(17)19-4/h6-7,14,18H,5,8-11H2,1-4H3/t14-,16-/m0/s1

InChI Key

ZOJSSXJDOHFOTI-HOCLYGCPSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Rosa rugosa	LOTUS Database	35616633

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as sesquiterpenoids. These are terpenes with three consecutive isoprene units.

Kingdom

Organic compounds

Super Class

Lipids and lipid-like molecules

Class

Prenol lipids

Sub Class

Sesquiterpenoids

Direct Parent

Sesquiterpenoids

Alternative Parents

Substituents

Sesquiterpenoid
Bisabolane sesquiterpenoid
Tertiary alcohol
Methyl ester
Enoate ester
Alpha,beta-unsaturated carboxylic ester
Carboxylic acid ester
Monocarboxylic acid or derivatives
Carboxylic acid derivative
Alcohol
Organic oxide
Organic oxygen compound
Organooxygen compound
Carbonyl group
Hydrocarbon derivative
Aliphatic homomonocyclic compound

Molecular Framework

Aliphatic homomonocyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	3.48	ChemAxon
pKa (Strongest Basic)	-0.47	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	2	ChemAxon
Hydrogen Donor Count	1	ChemAxon
Polar Surface Area	46.53 Å²	ChemAxon
Rotatable Bond Count	6	ChemAxon
Refractivity	78.67 m³·mol⁻¹	ChemAxon
Polarizability	31.74 Å³	ChemAxon
Number of Rings	1	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	Yes	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

169736

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

195819

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

Hashidoko Y, Endoh K, Kudo T, Tahara S: Capability of wild Rosa rugosa and its varieties and hybrids to produce sesquiterpene components in leaf glandular trichomes. Biosci Biotechnol Biochem. 2001 Sep;65(9):2037-43. doi: 10.1271/bbb.65.2037. [PubMed:11676018 ]
Hashidoko Y, Endoh K, Kudo T, Tahara S: (+)-4-epi-alpha-bisabolol as a major sesquiterepene constituent in the leaves of two Rosa rugosa hybrids, Martin Frobisher and Vanguard. Biosci Biotechnol Biochem. 2000 Apr;64(4):907-10. doi: 10.1271/bbb.64.907. [PubMed:10830519 ]
LOTUS database [Link]

Showing NP-Card for methyl (4r)-4-[(2s)-2-hydroxy-6-methylhept-5-en-2-yl]cyclohex-1-ene-1-carboxylate (NP0204347)

MOL for NP0204347 (methyl (4r)-4-[(2s)-2-hydroxy-6-methylhept-5-en-2-yl]cyclohex-1-ene-1-carboxylate)

3D MOL for NP0204347 (methyl (4r)-4-[(2s)-2-hydroxy-6-methylhept-5-en-2-yl]cyclohex-1-ene-1-carboxylate)

3D SDF for NP0204347 (methyl (4r)-4-[(2s)-2-hydroxy-6-methylhept-5-en-2-yl]cyclohex-1-ene-1-carboxylate)

3D-SDF for NP0204347 (methyl (4r)-4-[(2s)-2-hydroxy-6-methylhept-5-en-2-yl]cyclohex-1-ene-1-carboxylate)

PDB for NP0204347 (methyl (4r)-4-[(2s)-2-hydroxy-6-methylhept-5-en-2-yl]cyclohex-1-ene-1-carboxylate)

3D PDB for NP0204347 (methyl (4r)-4-[(2s)-2-hydroxy-6-methylhept-5-en-2-yl]cyclohex-1-ene-1-carboxylate)

SMILES for NP0204347 (methyl (4r)-4-[(2s)-2-hydroxy-6-methylhept-5-en-2-yl]cyclohex-1-ene-1-carboxylate)

INCHI for NP0204347 (methyl (4r)-4-[(2s)-2-hydroxy-6-methylhept-5-en-2-yl]cyclohex-1-ene-1-carboxylate)

Structure for NP0204347 (methyl (4r)-4-[(2s)-2-hydroxy-6-methylhept-5-en-2-yl]cyclohex-1-ene-1-carboxylate)

3D Structure for NP0204347 (methyl (4r)-4-[(2s)-2-hydroxy-6-methylhept-5-en-2-yl]cyclohex-1-ene-1-carboxylate)