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Showing NP-Card for 3-{[(s)-prop-2-ene-1-sulfinyl]sulfanyl}prop-1-ene (NP0203659)

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Record Information
Version2.0
Created at2022-09-04 23:10:30 UTC
Updated at2022-09-04 23:10:30 UTC
NP-MRD IDNP0203659
Secondary Accession NumbersNone
Natural Product Identification
Common Name3-{[(s)-prop-2-ene-1-sulfinyl]sulfanyl}prop-1-ene
DescriptionZINC1530846 belongs to the class of organic compounds known as thiosulfinic acid esters. These are organic compounds containing an ester of thiosulfinic acid with the general structure RS(=S)OR' (R, R'=alkyl, aryl). 3-{[(s)-prop-2-ene-1-sulfinyl]sulfanyl}prop-1-ene is found in Allium sativum. Based on a literature review very few articles have been published on ZINC1530846.
Structure
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MOL3D MOLSDFPDBSMILESInChI

MOL for NP0203659 (3-{[(s)-prop-2-ene-1-sulfinyl]sulfanyl}prop-1-ene)


  Mrv1652309052201102D          

  9  8  0  0  1  0            999 V2000
    1.0461    1.4289    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.7605    1.8414    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.4750    1.4289    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.1895    1.8414    0.0000 S   0  0  0  0  0  0  0  0  0  0  0  0
    3.9039    1.4289    0.0000 S   0  3  2  0  0  0  0  0  0  0  0  0
    3.9039    0.6039    0.0000 O   0  5  0  0  0  0  0  0  0  0  0  0
    4.6184    1.8414    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.3329    1.4289    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.0474    1.8414    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  2  0  0  0  0
  2  3  1  0  0  0  0
  3  4  1  0  0  0  0
  4  5  1  0  0  0  0
  5  6  1  1  0  0  0
  5  7  1  0  0  0  0
  7  8  1  0  0  0  0
  8  9  2  0  0  0  0
M  CHG  2   5   1   6  -1
M  END
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3D MOL for NP0203659 (3-{[(s)-prop-2-ene-1-sulfinyl]sulfanyl}prop-1-ene)

     RDKit          3D

 19 18  0  0  0  0  0  0  0  0999 V2000
   -3.4030    1.2353   -0.3434 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.3626   -0.0862   -0.2249 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1210   -0.8148    0.1615 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7385    0.2887    0.4355 S   0  0  0  0  0  0  0  0  0  0  0  0
    0.7952   -1.0895    0.9517 S   0  0  0  0  0  3  0  0  0  0  0  0
    1.2567   -0.6826    2.4799 O   0  0  0  0  0  1  0  0  0  0  0  0
    2.0158   -0.8824   -0.2797 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.4150    0.5502   -0.3140 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.6790    0.8802   -0.0771 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.2993    1.7478   -0.6212 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4802    1.7871   -0.1454 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.2667   -0.6500   -0.4170 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3493   -1.3177    1.1364 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8700   -1.5960   -0.6099 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.8998   -1.5216    0.0140 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.6941   -1.2553   -1.2525 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.6934    1.3239   -0.5281 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.9964    1.9243   -0.0966 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.4451    0.1585    0.1421 H   0  0  0  0  0  0  0  0  0  0  0  0
  5  6  1  1
  5  7  1  0
  7  8  1  0
  8  9  2  3
  5  4  1  0
  4  3  1  0
  3  2  1  0
  2  1  2  3
  7 15  1  0
  7 16  1  0
  8 17  1  0
  9 18  1  0
  9 19  1  0
  3 13  1  0
  3 14  1  0
  2 12  1  0
  1 10  1  0
  1 11  1  0
M  CHG  2   5   1   6  -1
M  END
Download

3D SDF for NP0203659 (3-{[(s)-prop-2-ene-1-sulfinyl]sulfanyl}prop-1-ene)


  Mrv1652309052201102D          

  9  8  0  0  1  0            999 V2000
    1.0461    1.4289    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.7605    1.8414    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.4750    1.4289    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.1895    1.8414    0.0000 S   0  0  0  0  0  0  0  0  0  0  0  0
    3.9039    1.4289    0.0000 S   0  3  2  0  0  0  0  0  0  0  0  0
    3.9039    0.6039    0.0000 O   0  5  0  0  0  0  0  0  0  0  0  0
    4.6184    1.8414    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.3329    1.4289    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.0474    1.8414    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  2  0  0  0  0
  2  3  1  0  0  0  0
  3  4  1  0  0  0  0
  4  5  1  0  0  0  0
  5  6  1  1  0  0  0
  5  7  1  0  0  0  0
  7  8  1  0  0  0  0
  8  9  2  0  0  0  0
M  CHG  2   5   1   6  -1
M  END
> <DATABASE_ID>
NP0203659

> <DATABASE_NAME>
NP-MRD

> <SMILES>
[O-][S@+](CC=C)SCC=C

> <INCHI_IDENTIFIER>
InChI=1S/C6H10OS2/c1-3-5-8-9(7)6-4-2/h3-4H,1-2,5-6H2/t9-/m0/s1

> <INCHI_KEY>
JDLKFOPOAOFWQN-VIFPVBQESA-N

> <FORMULA>
C6H10OS2

> <MOLECULAR_WEIGHT>
162.27

> <EXACT_MASS>
162.01730729

> <JCHEM_ACCEPTOR_COUNT>
1

> <JCHEM_ATOM_COUNT>
19

> <JCHEM_AVERAGE_POLARIZABILITY>
17.09213283825611

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
0

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
3-{[(S)-prop-2-ene-1-sulfinyl]sulfanyl}prop-1-ene

> <JCHEM_LOGP>
0.6934034811240538

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
0

> <JCHEM_PHYSIOLOGICAL_CHARGE>
1

> <JCHEM_PKA_STRONGEST_ACIDIC>
7.940397891146527

> <JCHEM_PKA_STRONGEST_BASIC>
-5.886669962412509

> <JCHEM_POLAR_SURFACE_AREA>
23.06

> <JCHEM_REFRACTIVITY>
44.93260000000001

> <JCHEM_ROTATABLE_BOND_COUNT>
5

> <JCHEM_RULE_OF_FIVE>
1

> <JCHEM_TRADITIONAL_IUPAC>
3-{[(S)-prop-2-ene-1-sulfinyl]sulfanyl}prop-1-ene

> <JCHEM_VEBER_RULE>
1

$$$$
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3D-SDF for NP0203659 (3-{[(s)-prop-2-ene-1-sulfinyl]sulfanyl}prop-1-ene)

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PDB for NP0203659 (3-{[(s)-prop-2-ene-1-sulfinyl]sulfanyl}prop-1-ene)
HEADER    PROTEIN                                 05-SEP-22   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   05-SEP-22         0                                  
HETATM    1  C   UNK     0       1.953   2.667   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0       3.286   3.437   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0       4.620   2.667   0.000  0.00  0.00           C+0
HETATM    4  S   UNK     0       5.954   3.437   0.000  0.00  0.00           S+0
HETATM    5  S   UNK     0       7.287   2.667   0.000  0.00  0.00           S+1
HETATM    6  O   UNK     0       7.287   1.127   0.000  0.00  0.00           O-1
HETATM    7  C   UNK     0       8.621   3.437   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0       9.955   2.667   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0      11.288   3.437   0.000  0.00  0.00           C+0
CONECT    1    2                                                            
CONECT    2    1    3                                                       
CONECT    3    2    4                                                       
CONECT    4    3    5                                                       
CONECT    5    4    6    7                                                  
CONECT    6    5                                                            
CONECT    7    5    8                                                       
CONECT    8    7    9                                                       
CONECT    9    8                                                            
MASTER        0    0    0    0    0    0    0    0    9    0   16    0
END

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3D PDB for NP0203659 (3-{[(s)-prop-2-ene-1-sulfinyl]sulfanyl}prop-1-ene)
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SMILES for NP0203659 (3-{[(s)-prop-2-ene-1-sulfinyl]sulfanyl}prop-1-ene)
[O-][S@+](CC=C)SCC=C
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INCHI for NP0203659 (3-{[(s)-prop-2-ene-1-sulfinyl]sulfanyl}prop-1-ene)
InChI=1S/C6H10OS2/c1-3-5-8-9(7)6-4-2/h3-4H,1-2,5-6H2/t9-/m0/s1
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View in JSmol
SynonymsNot Available
Chemical FormulaC6H10OS2
Average Mass162.2700 Da
Monoisotopic Mass162.01731 Da
IUPAC Name3-{[(S)-prop-2-ene-1-sulfinyl]sulfanyl}prop-1-ene
Traditional Name3-{[(S)-prop-2-ene-1-sulfinyl]sulfanyl}prop-1-ene
CAS Registry NumberNot Available
SMILES
[O-][S@+](CC=C)SCC=C
InChI Identifier
InChI=1S/C6H10OS2/c1-3-5-8-9(7)6-4-2/h3-4H,1-2,5-6H2/t9-/m0/s1
InChI KeyJDLKFOPOAOFWQN-VIFPVBQESA-N
Experimental Spectra
Not Available
Predicted Spectra
Spectrum TypeDescriptionDepositor IDDepositor OrganizationDepositorDeposition DateView
1D NMR13C NMR Spectrum (1D, 25 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 100 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 252 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 1000 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 50 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 200 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 75 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 300 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 101 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 400 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 126 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 500 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 151 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 600 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 176 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 700 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 201 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 800 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 226 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 900 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
Chemical Shift Submissions
Not Available
Species
Species of Origin
Species NameSourceReference
Allium sativumLOTUS Database
Chemical Taxonomy
Description Belongs to the class of organic compounds known as thiosulfinic acid esters. These are organic compounds containing an ester of thiosulfinic acid with the general structure RS(=S)OR' (R, R'=alkyl, aryl).
KingdomOrganic compounds  
Super ClassOrganic acids and derivatives  
ClassThiosulfinic acid esters  
Sub ClassNot Available
Direct ParentThiosulfinic acid esters  
Alternative Parents
Substituents
  • Thiosulfinic acid ester
    • 

  • Allyl sulfur compound
    • 

  • Sulfenyl compound
    • 

  • Sulfinyl compound
    • 

  • Organic oxygen compound
    • 

  • Organic oxide
    • 

  • Hydrocarbon derivative
    • 

  • Organosulfur compound
    • 

  • Aliphatic acyclic compound
Molecular FrameworkAliphatic acyclic compounds
External DescriptorsNot Available
Physical Properties
StateNot Available
Experimental Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Predicted Properties
PropertyValueSource
logP0.69ChemAxon
pKa (Strongest Acidic)7.94ChemAxon
pKa (Strongest Basic)-5.9ChemAxon
Physiological Charge1ChemAxon
Hydrogen Acceptor Count1ChemAxon
Hydrogen Donor Count0ChemAxon
Polar Surface Area23.06 ŲChemAxon
Rotatable Bond Count5ChemAxon
Refractivity44.93 m³·mol⁻¹ChemAxon
Polarizability17.09 ųChemAxon
Number of Rings0ChemAxon
BioavailabilityYesChemAxon
Rule of FiveYesChemAxon
Ghose FilterNoChemAxon
Veber's RuleYesChemAxon
MDDR-like RuleNoChemAxon
HMDB IDNot Available
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FoodDB IDNot Available
KNApSAcK IDNot Available
Chemspider ID34983892  
KEGG Compound IDNot Available
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem Compound51380898  
PDB IDNot Available
ChEBI IDNot Available
Good Scents IDNot Available
References
General References
  1. LOTUS database [Link]