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Record Information
Version2.0
Created at2022-09-04 23:08:19 UTC
Updated at2022-09-04 23:08:19 UTC
NP-MRD IDNP0203634
Secondary Accession NumbersNone
Natural Product Identification
Common Name(1s,2s,5s,6r,9r,12s,13r,17s,18r,20r)-6-[(2r)-4,5-dimethyl-6-oxo-2,3-dihydropyran-2-yl]-8,17-dihydroxy-6,13-dimethyl-7,19-dioxahexacyclo[10.9.0.0²,⁹.0⁵,⁹.0¹³,¹⁸.0¹⁸,²⁰]henicos-15-en-14-one
DescriptionWithaphysalin F belongs to the class of organic compounds known as withanolides and derivatives. These are c28 steroids structurally characterized by an ergostane skeleton usually functionalized at carbons 1, 22 and 26 to form a lactone ring. (1s,2s,5s,6r,9r,12s,13r,17s,18r,20r)-6-[(2r)-4,5-dimethyl-6-oxo-2,3-dihydropyran-2-yl]-8,17-dihydroxy-6,13-dimethyl-7,19-dioxahexacyclo[10.9.0.0²,⁹.0⁵,⁹.0¹³,¹⁸.0¹⁸,²⁰]henicos-15-en-14-one is found in Acnistus arborescens. (1s,2s,5s,6r,9r,12s,13r,17s,18r,20r)-6-[(2r)-4,5-dimethyl-6-oxo-2,3-dihydropyran-2-yl]-8,17-dihydroxy-6,13-dimethyl-7,19-dioxahexacyclo[10.9.0.0²,⁹.0⁵,⁹.0¹³,¹⁸.0¹⁸,²⁰]henicos-15-en-14-one was first documented in 2004 (PMID: 15104512). Based on a literature review a small amount of articles have been published on withaphysalin F (PMID: 33840171) (PMID: 15241891) (PMID: 21416228).
Structure
Thumb
SynonymsNot Available
Chemical FormulaC28H36O7
Average Mass484.5890 Da
Monoisotopic Mass484.24610 Da
IUPAC Name(1S,2S,5S,6R,9R,12S,13R,17S,18R,20R)-6-[(2R)-4,5-dimethyl-6-oxo-3,6-dihydro-2H-pyran-2-yl]-8,17-dihydroxy-6,13-dimethyl-7,19-dioxahexacyclo[10.9.0.0^{2,9}.0^{5,9}.0^{13,18}.0^{18,20}]henicos-15-en-14-one
Traditional Name(1S,2S,5S,6R,9R,12S,13R,17S,18R,20R)-6-[(2R)-4,5-dimethyl-6-oxo-2,3-dihydropyran-2-yl]-8,17-dihydroxy-6,13-dimethyl-7,19-dioxahexacyclo[10.9.0.0^{2,9}.0^{5,9}.0^{13,18}.0^{18,20}]henicos-15-en-14-one
CAS Registry NumberNot Available
SMILES
CC1=C(C)C(=O)O[C@H](C1)[C@]1(C)OC(O)[C@]23CC[C@H]4[C@@H](C[C@H]5O[C@]55[C@@H](O)C=CC(=O)[C@]45C)[C@@H]2CC[C@H]13
InChI Identifier
InChI=1S/C28H36O7/c1-13-11-21(33-23(31)14(13)2)26(4)18-6-5-17-15-12-22-28(34-22)20(30)8-7-19(29)25(28,3)16(15)9-10-27(17,18)24(32)35-26/h7-8,15-18,20-22,24,30,32H,5-6,9-12H2,1-4H3/t15-,16+,17+,18-,20+,21-,22-,24?,25+,26-,27-,28-/m1/s1
InChI KeyJAQPZFGKYMQWIT-YRFKGKMSSA-N
Experimental Spectra
Not Available
Predicted Spectra
Spectrum TypeDescriptionDepositor IDDepositor OrganizationDepositorDeposition DateView
1D NMR13C NMR Spectrum (1D, 25 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 100 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 252 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 1000 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 50 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 200 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 75 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 300 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 101 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 400 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 126 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 500 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 151 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 600 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 176 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 700 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 201 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 800 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 226 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 900 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
Chemical Shift Submissions
Not Available
Species
Species of Origin
Species NameSourceReference
Acnistus arborescensLOTUS Database
Chemical Taxonomy
Description Belongs to the class of organic compounds known as withanolides and derivatives. These are c28 steroids structurally characterized by an ergostane skeleton usually functionalized at carbons 1, 22 and 26 to form a lactone ring.
KingdomOrganic compounds
Super ClassLipids and lipid-like molecules
ClassSteroids and steroid derivatives
Sub ClassSteroid lactones
Direct ParentWithanolides and derivatives
Alternative Parents
Substituents
  • Withanolide-skeleton
  • Dihydropyranone
  • Oxepane
  • Cyclohexenone
  • Pyran
  • Oxolane
  • Enoate ester
  • Alpha,beta-unsaturated carboxylic ester
  • Carboxylic acid ester
  • Hemiacetal
  • Ketone
  • Lactone
  • Secondary alcohol
  • Monocarboxylic acid or derivatives
  • Carboxylic acid derivative
  • Ether
  • Oxirane
  • Dialkyl ether
  • Organoheterocyclic compound
  • Oxacycle
  • Organooxygen compound
  • Carbonyl group
  • Organic oxygen compound
  • Organic oxide
  • Alcohol
  • Hydrocarbon derivative
  • Aliphatic heteropolycyclic compound
Molecular FrameworkAliphatic heteropolycyclic compounds
External DescriptorsNot Available
Physical Properties
StateNot Available
Experimental Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Predicted Properties
PropertyValueSource
logP3.3ChemAxon
pKa (Strongest Acidic)11.91ChemAxon
pKa (Strongest Basic)-3.5ChemAxon
Physiological Charge0ChemAxon
Hydrogen Acceptor Count6ChemAxon
Hydrogen Donor Count2ChemAxon
Polar Surface Area105.59 ŲChemAxon
Rotatable Bond Count1ChemAxon
Refractivity126.17 m³·mol⁻¹ChemAxon
Polarizability51.52 ųChemAxon
Number of Rings7ChemAxon
BioavailabilityYesChemAxon
Rule of FiveYesChemAxon
Ghose FilterNoChemAxon
Veber's RuleNoChemAxon
MDDR-like RuleNoChemAxon
HMDB IDNot Available
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FoodDB IDNot Available
KNApSAcK IDNot Available
Chemspider ID23339797
KEGG Compound IDNot Available
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem Compound44566968
PDB IDNot Available
ChEBI IDNot Available
Good Scents IDNot Available
References
General References
  1. Veras ML, Bezerra MZ, Lemos TL, Uchoa DE, Braz-Filho R, Chai HB, Cordell GA, Pessoa OD: Cytotoxic withaphysalins from the leaves of Acnistus arborescens. J Nat Prod. 2004 Apr;67(4):710-3. doi: 10.1021/np0340347. [PubMed:15104512 ]
  2. Rath SN, Jena L, Bhuyan R, Mahanandia NC, Patri M: In silico discovery and evaluation of phytochemicals binding mechanism against human catechol-O-methyltransferase as a putative bioenhancer of L-DOPA therapy in Parkinson disease. Genomics Inform. 2021 Mar;19(1):e7. doi: 10.5808/gi.20061. Epub 2021 Feb 26. [PubMed:33840171 ]
  3. Veras ML, Bezerra MZ, Braz-Filho R, Pessoa OD, Montenegro RC, do O Pessoa C, de Moraes MO, Costa-Lutufo LV: Cytotoxic epimeric withaphysalins from leaves of Acnistus arborescens. Planta Med. 2004 Jun;70(6):551-5. doi: 10.1055/s-2004-827156. [PubMed:15241891 ]
  4. Rocha DD, Balgi A, Maia AI, Pessoa OD, Silveira ER, Costa-Lotufo LV, Roberge M, Pessoa C: Cell cycle arrest through inhibition of tubulin polymerization by withaphysalin F, a bioactive compound isolated from Acnistus arborescens. Invest New Drugs. 2012 Jun;30(3):959-66. doi: 10.1007/s10637-011-9649-x. Epub 2011 Mar 18. [PubMed:21416228 ]
  5. LOTUS database [Link]