NP-MRD: Showing NP-Card for (1s,3s)-1,8-dihydroxy-3-methyl-1,2,3,4-tetrahydrotetraphene-7,12-dione (NP0202931)

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Record Information

Version

2.0

Created at

2022-09-04 22:15:33 UTC

Updated at

2022-09-04 22:15:33 UTC

NP-MRD ID

NP0202931

Secondary Accession Numbers

None

Natural Product Identification

Common Name

(1s,3s)-1,8-dihydroxy-3-methyl-1,2,3,4-tetrahydrotetraphene-7,12-dione

Description

Emycin A belongs to the class of organic compounds known as angucyclines. These are polyketides with a structure based on then benz[a]anthracene skeleton, with the particularity that the central ring of the anthracene moiety is a para-quinone. (1s,3s)-1,8-dihydroxy-3-methyl-1,2,3,4-tetrahydrotetraphene-7,12-dione is found in Streptomyces griseoincarnatus. Based on a literature review very few articles have been published on Emycin A.

Structure

MOL 3D MOL SDF PDB SMILES InChI

     RDKit          3D

 39 42  0  0  0  0  0  0  0  0999 V2000
   -4.9389    0.5367   -0.3812 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.7177    0.2257    0.4862 C   0  0  1  0  0  0  0  0  0  0  0  0
   -3.1595   -1.0699    0.0281 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6885   -1.1899    0.1502 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0794   -2.3492    0.5763 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.2808   -2.4436    0.6956 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.0190   -1.3235    0.3698 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.4510   -0.1292   -0.0650 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9211   -0.0559   -0.1790 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7021    1.0831   -0.6202 C   0  0  1  0  0  0  0  0  0  0  0  0
   -2.5285    0.5289   -1.6689 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7359    1.3730    0.4473 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.2699    1.0213   -0.3899 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7569    2.0857   -0.7765 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.7197    0.8834   -0.2451 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.5051    1.9677   -0.5507 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.8723    1.9436   -0.4493 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.4484    0.7723   -0.0218 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.6953   -0.3684    0.3047 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.3710   -1.4748    0.7175 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.3118   -0.2953    0.1859 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.4671   -1.4292    0.5040 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.9647   -2.5276    0.9021 O   0  0  0  0  0  0  0  0  0  0  0  0
   -4.8639    1.5575   -0.8114 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.8841    0.4381    0.1896 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.0156   -0.1702   -1.2378 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.0946    0.1356    1.5253 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5753   -1.8744    0.7135 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5438   -1.4190   -0.9752 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7073   -3.2019    0.8203 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.7139   -3.3660    1.0310 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3015    1.9223   -1.1164 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8787    0.2835   -2.3971 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.2933    2.2730    0.1176 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3295    1.5708    1.4346 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.0099    2.8914   -0.8906 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.4813    2.8101   -0.6948 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.5309    0.7294    0.0664 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.0903   -2.3453    0.9868 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2 12  1  0
 12 10  1  0
 10 11  1  0
 10  9  1  0
  9  8  2  0
  8 13  1  0
 13 14  2  0
 13 15  1  0
 15 16  2  0
 16 17  1  0
 17 18  2  0
 18 19  1  0
 19 20  1  0
 19 21  2  0
 21 22  1  0
 22 23  2  0
 22  7  1  0
  7  6  2  0
  6  5  1  0
  5  4  2  0
  4  3  1  0
  3  2  1  0
  4  9  1  0
  7  8  1  0
 21 15  1  0
  1 24  1  0
  1 25  1  0
  1 26  1  0
  2 27  1  1
 12 34  1  0
 12 35  1  0
 10 32  1  6
 11 33  1  0
 16 36  1  0
 17 37  1  0
 18 38  1  0
 20 39  1  0
  6 31  1  0
  5 30  1  0
  3 28  1  0
  3 29  1  0
M  END


  Mrv1652309052200152D          

 23 26  0  0  1  0            999 V2000
    6.1154    0.1007    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.3052    0.2566    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    5.0352    1.0361    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.2251    1.1921    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.9550    1.9716    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.1449    2.1275    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.6048    1.5039    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.8748    0.7243    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.6850    0.5684    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.9550   -0.2111    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    3.4149   -0.8348    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.7651   -0.3671    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.3347    0.1007    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.6048   -0.6789    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.5246    0.2566    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.9845   -0.3671    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.1744   -0.2111    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0957    0.5684    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.4444    1.1921    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.1744    1.9716    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.2546    1.0361    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.7946    1.6598    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.5246    2.4393    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  2  1  1  6  0  0  0
  2  3  1  0  0  0  0
  3  4  1  0  0  0  0
  4  5  2  0  0  0  0
  5  6  1  0  0  0  0
  6  7  2  0  0  0  0
  7  8  1  0  0  0  0
  8  9  2  0  0  0  0
  4  9  1  0  0  0  0
  9 10  1  0  0  0  0
 10 11  1  6  0  0  0
 10 12  1  0  0  0  0
  2 12  1  0  0  0  0
  8 13  1  0  0  0  0
 13 14  2  0  0  0  0
 13 15  1  0  0  0  0
 15 16  2  0  0  0  0
 16 17  1  0  0  0  0
 17 18  2  0  0  0  0
 18 19  1  0  0  0  0
 19 20  1  0  0  0  0
 19 21  2  0  0  0  0
 15 21  1  0  0  0  0
 21 22  1  0  0  0  0
  7 22  1  0  0  0  0
 22 23  2  0  0  0  0
M  END
> <DATABASE_ID>
NP0202931

> <DATABASE_NAME>
NP-MRD

> <SMILES>
C[C@@H]1C[C@H](O)C2=C3C(=O)C4=CC=CC(O)=C4C(=O)C3=CC=C2C1

> <INCHI_IDENTIFIER>
InChI=1S/C19H16O4/c1-9-7-10-5-6-12-17(15(10)14(21)8-9)19(23)11-3-2-4-13(20)16(11)18(12)22/h2-6,9,14,20-21H,7-8H2,1H3/t9-,14-/m0/s1

> <INCHI_KEY>
OBCFJTYDPHCLMZ-XPTSAGLGSA-N

> <FORMULA>
C19H16O4

> <MOLECULAR_WEIGHT>
308.333

> <EXACT_MASS>
308.104858995

> <JCHEM_ACCEPTOR_COUNT>
4

> <JCHEM_ATOM_COUNT>
39

> <JCHEM_AVERAGE_POLARIZABILITY>
32.761863703170505

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
2

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
1

> <JCHEM_IUPAC>
(1S,3S)-1,8-dihydroxy-3-methyl-1,2,3,4,7,12-hexahydrotetraphene-7,12-dione

> <JCHEM_LOGP>
3.773602988333333

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
4

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA>
14.134028433410059

> <JCHEM_PKA_STRONGEST_ACIDIC>
8.228341855277828

> <JCHEM_PKA_STRONGEST_BASIC>
-3.1793745420738517

> <JCHEM_POLAR_SURFACE_AREA>
74.6

> <JCHEM_REFRACTIVITY>
86.67819999999998

> <JCHEM_ROTATABLE_BOND_COUNT>
0

> <JCHEM_RULE_OF_FIVE>
1

> <JCHEM_TRADITIONAL_IUPAC>
(1S,3S)-1,8-dihydroxy-3-methyl-1,2,3,4-tetrahydrotetraphene-7,12-dione

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 05-SEP-22   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   05-SEP-22         0                                  
HETATM    1  C   UNK     0      11.415   0.188   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0       9.903   0.479   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0       9.399   1.934   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0       7.887   2.225   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0       7.383   3.680   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0       5.870   3.971   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0       4.862   2.807   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0       5.366   1.352   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0       6.879   1.061   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0       7.383  -0.394   0.000  0.00  0.00           C+0
HETATM   11  O   UNK     0       6.375  -1.558   0.000  0.00  0.00           O+0
HETATM   12  C   UNK     0       8.895  -0.685   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0       4.358   0.188   0.000  0.00  0.00           C+0
HETATM   14  O   UNK     0       4.862  -1.267   0.000  0.00  0.00           O+0
HETATM   15  C   UNK     0       2.846   0.479   0.000  0.00  0.00           C+0
HETATM   16  C   UNK     0       1.838  -0.685   0.000  0.00  0.00           C+0
HETATM   17  C   UNK     0       0.326  -0.394   0.000  0.00  0.00           C+0
HETATM   18  C   UNK     0      -0.179   1.061   0.000  0.00  0.00           C+0
HETATM   19  C   UNK     0       0.830   2.225   0.000  0.00  0.00           C+0
HETATM   20  O   UNK     0       0.326   3.680   0.000  0.00  0.00           O+0
HETATM   21  C   UNK     0       2.342   1.934   0.000  0.00  0.00           C+0
HETATM   22  C   UNK     0       3.350   3.098   0.000  0.00  0.00           C+0
HETATM   23  O   UNK     0       2.846   4.553   0.000  0.00  0.00           O+0
CONECT    1    2                                                            
CONECT    2    1    3   12                                                  
CONECT    3    2    4                                                       
CONECT    4    3    5    9                                                  
CONECT    5    4    6                                                       
CONECT    6    5    7                                                       
CONECT    7    6    8   22                                                  
CONECT    8    7    9   13                                                  
CONECT    9    8    4   10                                                  
CONECT   10    9   11   12                                                  
CONECT   11   10                                                            
CONECT   12   10    2                                                       
CONECT   13    8   14   15                                                  
CONECT   14   13                                                            
CONECT   15   13   16   21                                                  
CONECT   16   15   17                                                       
CONECT   17   16   18                                                       
CONECT   18   17   19                                                       
CONECT   19   18   20   21                                                  
CONECT   20   19                                                            
CONECT   21   19   15   22                                                  
CONECT   22   21    7   23                                                  
CONECT   23   22                                                            
MASTER        0    0    0    0    0    0    0    0   23    0   52    0
END

View in JSmol

Synonyms

Not Available

Chemical Formula

C₁₉H₁₆O₄

Average Mass

308.3330 Da

Monoisotopic Mass

308.10486 Da

IUPAC Name

(1S,3S)-1,8-dihydroxy-3-methyl-1,2,3,4,7,12-hexahydrotetraphene-7,12-dione

Traditional Name

(1S,3S)-1,8-dihydroxy-3-methyl-1,2,3,4-tetrahydrotetraphene-7,12-dione

CAS Registry Number

Not Available

SMILES

C[C@@H]1C[C@H](O)C2=C3C(=O)C4=CC=CC(O)=C4C(=O)C3=CC=C2C1

InChI Identifier

InChI=1S/C19H16O4/c1-9-7-10-5-6-12-17(15(10)14(21)8-9)19(23)11-3-2-4-13(20)16(11)18(12)22/h2-6,9,14,20-21H,7-8H2,1H3/t9-,14-/m0/s1

InChI Key

OBCFJTYDPHCLMZ-XPTSAGLGSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Streptomyces griseoincarnatus	LOTUS Database	35616633

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as angucyclines. These are polyketides with a structure based on then benz[a]anthracene skeleton, with the particularity that the central ring of the anthracene moiety is a para-quinone.

Kingdom

Organic compounds

Super Class

Phenylpropanoids and polyketides

Class

Angucyclines

Sub Class

Not Available

Direct Parent

Angucyclines

Alternative Parents

Substituents

Angucycline core
9,10-anthraquinone
Anthraquinone
Phenanthrol
Anthracene
Phenanthrene
Tetralin
Aryl ketone
1-hydroxy-4-unsubstituted benzenoid
1-hydroxy-2-unsubstituted benzenoid
Phenol
Benzenoid
Vinylogous acid
Ketone
Secondary alcohol
Alcohol
Hydrocarbon derivative
Organic oxide
Organooxygen compound
Organic oxygen compound
Aromatic homopolycyclic compound

Molecular Framework

Aromatic homopolycyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	3.77	ChemAxon
pKa (Strongest Acidic)	8.23	ChemAxon
pKa (Strongest Basic)	-3.2	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	4	ChemAxon
Hydrogen Donor Count	2	ChemAxon
Polar Surface Area	74.6 Å²	ChemAxon
Rotatable Bond Count	0	ChemAxon
Refractivity	86.68 m³·mol⁻¹	ChemAxon
Polarizability	32.76 Å³	ChemAxon
Number of Rings	4	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	Yes	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

C00015219

Chemspider ID

9252853

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

11077704

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

LOTUS database [Link]

Showing NP-Card for (1s,3s)-1,8-dihydroxy-3-methyl-1,2,3,4-tetrahydrotetraphene-7,12-dione (NP0202931)

MOL for NP0202931 ((1s,3s)-1,8-dihydroxy-3-methyl-1,2,3,4-tetrahydrotetraphene-7,12-dione)

3D MOL for NP0202931 ((1s,3s)-1,8-dihydroxy-3-methyl-1,2,3,4-tetrahydrotetraphene-7,12-dione)

3D SDF for NP0202931 ((1s,3s)-1,8-dihydroxy-3-methyl-1,2,3,4-tetrahydrotetraphene-7,12-dione)

3D-SDF for NP0202931 ((1s,3s)-1,8-dihydroxy-3-methyl-1,2,3,4-tetrahydrotetraphene-7,12-dione)

PDB for NP0202931 ((1s,3s)-1,8-dihydroxy-3-methyl-1,2,3,4-tetrahydrotetraphene-7,12-dione)

3D PDB for NP0202931 ((1s,3s)-1,8-dihydroxy-3-methyl-1,2,3,4-tetrahydrotetraphene-7,12-dione)

SMILES for NP0202931 ((1s,3s)-1,8-dihydroxy-3-methyl-1,2,3,4-tetrahydrotetraphene-7,12-dione)

INCHI for NP0202931 ((1s,3s)-1,8-dihydroxy-3-methyl-1,2,3,4-tetrahydrotetraphene-7,12-dione)

Structure for NP0202931 ((1s,3s)-1,8-dihydroxy-3-methyl-1,2,3,4-tetrahydrotetraphene-7,12-dione)

3D Structure for NP0202931 ((1s,3s)-1,8-dihydroxy-3-methyl-1,2,3,4-tetrahydrotetraphene-7,12-dione)