NP-MRD: Showing NP-Card for 5-hydroxy-4-(hydroxymethyl)-8,8,11a-trimethyl-1-{[3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}-1h,6h,7h,7ah,9h,10h,11h-phenanthro[3,4-c]furan-3-one (NP0202613)

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Record Information

Version

2.0

Created at

2022-09-04 21:51:54 UTC

Updated at

2022-09-04 21:51:54 UTC

NP-MRD ID

NP0202613

Secondary Accession Numbers

None

Natural Product Identification

Common Name

5-hydroxy-4-(hydroxymethyl)-8,8,11a-trimethyl-1-{[3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}-1h,6h,7h,7ah,9h,10h,11h-phenanthro[3,4-c]furan-3-one

Description

11-Hydroxy-12-(hydroxymethyl)-2,6,6-trimethyl-16-{[3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}-15-oxatetracyclo[8.7.0.0²,⁷.0¹³,¹⁷]Heptadeca-1(10),11,13(17)-trien-14-one belongs to the class of organic compounds known as diterpene lactones. These are diterpenoids containing a lactone moiety. Based on a literature review very few articles have been published on 11-hydroxy-12-(hydroxymethyl)-2,6,6-trimethyl-16-{[3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}-15-oxatetracyclo[8.7.0.0²,⁷.0¹³,¹⁷]Heptadeca-1(10),11,13(17)-trien-14-one.

Structure

MOL 3D MOL SDF PDB SMILES InChI


  Mrv1652309042223512D          

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M  END

     RDKit          3D

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M  END


  Mrv1652309042223512D          

 36 40  0  0  0  0            999 V2000
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  7  9  1  0  0  0  0
  9 10  2  0  0  0  0
 10 11  1  0  0  0  0
 11 12  1  0  0  0  0
 11 13  2  0  0  0  0
 13 14  1  0  0  0  0
 14 15  1  0  0  0  0
 13 16  1  0  0  0  0
 16 17  2  0  0  0  0
  9 17  1  0  0  0  0
 17 18  1  0  0  0  0
 18 19  1  0  0  0  0
 19 20  1  0  0  0  0
 20 21  1  0  0  0  0
 21 22  1  0  0  0  0
 22 23  1  0  0  0  0
 23 24  1  0  0  0  0
 22 25  1  0  0  0  0
 25 26  1  0  0  0  0
 25 27  1  0  0  0  0
 27 28  1  0  0  0  0
 27 29  1  0  0  0  0
 20 29  1  0  0  0  0
 29 30  1  0  0  0  0
 18 31  1  0  0  0  0
 31 32  1  0  0  0  0
 16 32  1  0  0  0  0
 32 33  2  0  0  0  0
 10 34  1  0  0  0  0
 34 35  1  0  0  0  0
 35 36  1  0  0  0  0
  2 36  1  0  0  0  0
  7 36  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0202613

> <DATABASE_NAME>
NP-MRD

> <SMILES>
CC1(C)CCCC2(C)C1CCC1=C2C2=C(C(=O)OC2OC2OC(CO)C(O)C(O)C2O)C(CO)=C1O

> <INCHI_IDENTIFIER>
InChI=1S/C26H36O10/c1-25(2)7-4-8-26(3)14(25)6-5-11-17(26)16-15(12(9-27)18(11)29)22(33)35-23(16)36-24-21(32)20(31)19(30)13(10-28)34-24/h13-14,19-21,23-24,27-32H,4-10H2,1-3H3

> <INCHI_KEY>
OHUWCLPFQBDELY-UHFFFAOYSA-N

> <FORMULA>
C26H36O10

> <MOLECULAR_WEIGHT>
508.564

> <EXACT_MASS>
508.230847359

> <JCHEM_ACCEPTOR_COUNT>
9

> <JCHEM_ATOM_COUNT>
72

> <JCHEM_AVERAGE_POLARIZABILITY>
53.29587822935291

> <JCHEM_BIOAVAILABILITY>
0

> <JCHEM_DONOR_COUNT>
6

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
11-hydroxy-12-(hydroxymethyl)-2,6,6-trimethyl-16-{[3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}-15-oxatetracyclo[8.7.0.0^{2,7}.0^{13,17}]heptadeca-1(10),11,13(17)-trien-14-one

> <JCHEM_LOGP>
1.660792567333333

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
5

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA>
12.20215396424069

> <JCHEM_PKA_STRONGEST_ACIDIC>
9.31164063720845

> <JCHEM_PKA_STRONGEST_BASIC>
-2.981084906696709

> <JCHEM_POLAR_SURFACE_AREA>
166.14

> <JCHEM_REFRACTIVITY>
126.35589999999998

> <JCHEM_ROTATABLE_BOND_COUNT>
4

> <JCHEM_RULE_OF_FIVE>
0

> <JCHEM_TRADITIONAL_IUPAC>
11-hydroxy-12-(hydroxymethyl)-2,6,6-trimethyl-16-{[3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}-15-oxatetracyclo[8.7.0.0^{2,7}.0^{13,17}]heptadeca-1(10),11,13(17)-trien-14-one

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 04-SEP-22   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   04-SEP-22         0                                  
HETATM    1  C   UNK     0      -1.491  -3.218   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0       0.036  -3.020   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0      -0.424  -1.550   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0      -0.034  -4.558   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0       1.263  -5.388   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0       2.631  -4.680   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0       2.701  -3.142   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0       3.998  -3.972   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0       4.068  -2.433   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0       4.139  -0.895   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0       5.506  -0.186   0.000  0.00  0.00           C+0
HETATM   12  O   UNK     0       5.576   1.352   0.000  0.00  0.00           O+0
HETATM   13  C   UNK     0       6.803  -1.016   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0       8.171  -0.308   0.000  0.00  0.00           C+0
HETATM   15  O   UNK     0       8.241   1.230   0.000  0.00  0.00           O+0
HETATM   16  C   UNK     0       6.733  -2.555   0.000  0.00  0.00           C+0
HETATM   17  C   UNK     0       5.366  -3.263   0.000  0.00  0.00           C+0
HETATM   18  C   UNK     0       5.617  -4.783   0.000  0.00  0.00           C+0
HETATM   19  O   UNK     0       4.535  -5.879   0.000  0.00  0.00           O+0
HETATM   20  C   UNK     0       4.944  -7.364   0.000  0.00  0.00           C+0
HETATM   21  O   UNK     0       6.434  -7.752   0.000  0.00  0.00           O+0
HETATM   22  C   UNK     0       6.843  -9.237   0.000  0.00  0.00           C+0
HETATM   23  C   UNK     0       8.333  -9.625   0.000  0.00  0.00           C+0
HETATM   24  O   UNK     0       9.414  -8.529   0.000  0.00  0.00           O+0
HETATM   25  C   UNK     0       5.761 -10.333   0.000  0.00  0.00           C+0
HETATM   26  O   UNK     0       6.170 -11.818   0.000  0.00  0.00           O+0
HETATM   27  C   UNK     0       4.271  -9.945   0.000  0.00  0.00           C+0
HETATM   28  O   UNK     0       3.189 -11.041   0.000  0.00  0.00           O+0
HETATM   29  C   UNK     0       3.862  -8.460   0.000  0.00  0.00           C+0
HETATM   30  O   UNK     0       2.372  -8.071   0.000  0.00  0.00           O+0
HETATM   31  O   UNK     0       7.139  -5.013   0.000  0.00  0.00           O+0
HETATM   32  C   UNK     0       7.829  -3.636   0.000  0.00  0.00           C+0
HETATM   33  O   UNK     0       9.349  -3.385   0.000  0.00  0.00           O+0
HETATM   34  C   UNK     0       2.841  -0.065   0.000  0.00  0.00           C+0
HETATM   35  C   UNK     0       1.474  -0.773   0.000  0.00  0.00           C+0
HETATM   36  C   UNK     0       1.404  -2.312   0.000  0.00  0.00           C+0
CONECT    1    2                                                            
CONECT    2    1    3    4   36                                             
CONECT    3    2                                                            
CONECT    4    2    5                                                       
CONECT    5    4    6                                                       
CONECT    6    5    7                                                       
CONECT    7    6    8    9   36                                             
CONECT    8    7                                                            
CONECT    9    7   10   17                                                  
CONECT   10    9   11   34                                                  
CONECT   11   10   12   13                                                  
CONECT   12   11                                                            
CONECT   13   11   14   16                                                  
CONECT   14   13   15                                                       
CONECT   15   14                                                            
CONECT   16   13   17   32                                                  
CONECT   17   16    9   18                                                  
CONECT   18   17   19   31                                                  
CONECT   19   18   20                                                       
CONECT   20   19   21   29                                                  
CONECT   21   20   22                                                       
CONECT   22   21   23   25                                                  
CONECT   23   22   24                                                       
CONECT   24   23                                                            
CONECT   25   22   26   27                                                  
CONECT   26   25                                                            
CONECT   27   25   28   29                                                  
CONECT   28   27                                                            
CONECT   29   27   20   30                                                  
CONECT   30   29                                                            
CONECT   31   18   32                                                       
CONECT   32   31   16   33                                                  
CONECT   33   32                                                            
CONECT   34   10   35                                                       
CONECT   35   34   36                                                       
CONECT   36   35    2    7                                                  
MASTER        0    0    0    0    0    0    0    0   36    0   80    0
END

View in JSmol

Synonyms

Not Available

Chemical Formula

C₂₆H₃₆O₁₀

Average Mass

508.5640 Da

Monoisotopic Mass

508.23085 Da

IUPAC Name

11-hydroxy-12-(hydroxymethyl)-2,6,6-trimethyl-16-{[3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}-15-oxatetracyclo[8.7.0.0^{2,7}.0^{13,17}]heptadeca-1(10),11,13(17)-trien-14-one

Traditional Name

11-hydroxy-12-(hydroxymethyl)-2,6,6-trimethyl-16-{[3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}-15-oxatetracyclo[8.7.0.0^{2,7}.0^{13,17}]heptadeca-1(10),11,13(17)-trien-14-one

CAS Registry Number

Not Available

SMILES

CC1(C)CCCC2(C)C1CCC1=C2C2=C(C(=O)OC2OC2OC(CO)C(O)C(O)C2O)C(CO)=C1O

InChI Identifier

InChI=1S/C26H36O10/c1-25(2)7-4-8-26(3)14(25)6-5-11-17(26)16-15(12(9-27)18(11)29)22(33)35-23(16)36-24-21(32)20(31)19(30)13(10-28)34-24/h13-14,19-21,23-24,27-32H,4-10H2,1-3H3

InChI Key

OHUWCLPFQBDELY-UHFFFAOYSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Not Available

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as diterpene lactones. These are diterpenoids containing a lactone moiety.

Kingdom

Organic compounds

Super Class

Lipids and lipid-like molecules

Class

Prenol lipids

Sub Class

Terpene lactones

Direct Parent

Diterpene lactones

Alternative Parents

Substituents

Diterpene lactone
Diterpenoid
Phenanthrene
Hexose monosaccharide
Glycosyl compound
O-glycosyl compound
Benzofuranone
Isobenzofuranone
Tetralin
Phthalide
Isocoumaran
Monosaccharide
Benzenoid
Oxane
Secondary alcohol
Carboxylic acid ester
Lactone
Polyol
Carboxylic acid derivative
Oxacycle
Organoheterocyclic compound
Monocarboxylic acid or derivatives
Acetal
Hydrocarbon derivative
Organic oxide
Aromatic alcohol
Organic oxygen compound
Organooxygen compound
Primary alcohol
Alcohol
Aromatic heteropolycyclic compound

Molecular Framework

Aromatic heteropolycyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	1.66	ChemAxon
pKa (Strongest Acidic)	9.31	ChemAxon
pKa (Strongest Basic)	-3	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	9	ChemAxon
Hydrogen Donor Count	6	ChemAxon
Polar Surface Area	166.14 Å²	ChemAxon
Rotatable Bond Count	4	ChemAxon
Refractivity	126.36 m³·mol⁻¹	ChemAxon
Polarizability	53.3 Å³	ChemAxon
Number of Rings	5	ChemAxon
Bioavailability	No	ChemAxon
Rule of Five	No	ChemAxon
Ghose Filter	No	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

Not Available

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

85163941

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

LOTUS database [Link]

Showing NP-Card for 5-hydroxy-4-(hydroxymethyl)-8,8,11a-trimethyl-1-{[3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}-1h,6h,7h,7ah,9h,10h,11h-phenanthro[3,4-c]furan-3-one (NP0202613)

MOL for NP0202613 (5-hydroxy-4-(hydroxymethyl)-8,8,11a-trimethyl-1-{[3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}-1h,6h,7h,7ah,9h,10h,11h-phenanthro[3,4-c]furan-3-one)

3D MOL for NP0202613 (5-hydroxy-4-(hydroxymethyl)-8,8,11a-trimethyl-1-{[3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}-1h,6h,7h,7ah,9h,10h,11h-phenanthro[3,4-c]furan-3-one)

3D SDF for NP0202613 (5-hydroxy-4-(hydroxymethyl)-8,8,11a-trimethyl-1-{[3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}-1h,6h,7h,7ah,9h,10h,11h-phenanthro[3,4-c]furan-3-one)

3D-SDF for NP0202613 (5-hydroxy-4-(hydroxymethyl)-8,8,11a-trimethyl-1-{[3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}-1h,6h,7h,7ah,9h,10h,11h-phenanthro[3,4-c]furan-3-one)

PDB for NP0202613 (5-hydroxy-4-(hydroxymethyl)-8,8,11a-trimethyl-1-{[3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}-1h,6h,7h,7ah,9h,10h,11h-phenanthro[3,4-c]furan-3-one)

3D PDB for NP0202613 (5-hydroxy-4-(hydroxymethyl)-8,8,11a-trimethyl-1-{[3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}-1h,6h,7h,7ah,9h,10h,11h-phenanthro[3,4-c]furan-3-one)

SMILES for NP0202613 (5-hydroxy-4-(hydroxymethyl)-8,8,11a-trimethyl-1-{[3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}-1h,6h,7h,7ah,9h,10h,11h-phenanthro[3,4-c]furan-3-one)

INCHI for NP0202613 (5-hydroxy-4-(hydroxymethyl)-8,8,11a-trimethyl-1-{[3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}-1h,6h,7h,7ah,9h,10h,11h-phenanthro[3,4-c]furan-3-one)

Structure for NP0202613 (5-hydroxy-4-(hydroxymethyl)-8,8,11a-trimethyl-1-{[3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}-1h,6h,7h,7ah,9h,10h,11h-phenanthro[3,4-c]furan-3-one)

3D Structure for NP0202613 (5-hydroxy-4-(hydroxymethyl)-8,8,11a-trimethyl-1-{[3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}-1h,6h,7h,7ah,9h,10h,11h-phenanthro[3,4-c]furan-3-one)