NP-MRD: Showing NP-Card for (2r)-2-amino-3-{[(5z)-5-(hydroxyimino)-5-{[(2s,3r,4s,5s,6r)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]sulfanyl}pentyl]sulfanyl}propanoic acid (NP0202330)

Jump To Section:

Identification Spectra BioTaxonomy ChemoTaxonomy Physical properties Links References XML

Record Information

Version

2.0

Created at

2022-09-04 21:31:51 UTC

Updated at

2022-09-04 21:31:51 UTC

NP-MRD ID

NP0202330

Secondary Accession Numbers

None

Natural Product Identification

Common Name

(2r)-2-amino-3-{[(5z)-5-(hydroxyimino)-5-{[(2s,3r,4s,5s,6r)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]sulfanyl}pentyl]sulfanyl}propanoic acid

Description

S-[5-(beta-D-Glucopyranosylthio)-5-(hydroxyimino)pentyl]-L-cysteine belongs to the class of organic compounds known as desulfoglucosinolates. These are derivatives of glucosinolates which arise by removal of the sulfonate moiety. (2r)-2-amino-3-{[(5z)-5-(hydroxyimino)-5-{[(2s,3r,4s,5s,6r)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]sulfanyl}pentyl]sulfanyl}propanoic acid is found in Eruca vesicaria. Based on a literature review very few articles have been published on S-[5-(beta-D-Glucopyranosylthio)-5-(hydroxyimino)pentyl]-L-cysteine.

Structure

MOL 3D MOL SDF PDB SMILES InChI


  Mrv1652309042223312D          

 26 26  0  0  1  0            999 V2000
    2.8579   -1.6500    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    2.8579   -2.4750    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    2.1434   -2.8875    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4289   -2.4750    0.0000 S   0  0  0  0  0  0  0  0  0  0  0  0
    0.7145   -2.8875    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0000   -2.4750    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7145   -2.8875    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4289   -2.4750    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1434   -2.8875    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1434   -3.7125    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8579   -4.1250    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8579   -2.4750    0.0000 S   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5724   -2.8875    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
   -3.5724   -3.7125    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -4.2868   -4.1250    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
   -4.2868   -4.9500    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.0013   -5.3625    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -5.0013   -3.7125    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   -5.7158   -4.1250    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -5.0013   -2.8875    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
   -5.7158   -2.4750    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -4.2868   -2.4750    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   -4.2868   -1.6500    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.5724   -2.8875    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.2868   -2.4750    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.5724   -3.7125    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  2  1  1  6  0  0  0
  2  3  1  0  0  0  0
  3  4  1  0  0  0  0
  4  5  1  0  0  0  0
  5  6  1  0  0  0  0
  6  7  1  0  0  0  0
  7  8  1  0  0  0  0
  8  9  1  0  0  0  0
  9 10  2  0  0  0  0
 10 11  1  0  0  0  0
  9 12  1  0  0  0  0
 13 12  1  6  0  0  0
 13 14  1  0  0  0  0
 14 15  1  0  0  0  0
 15 16  1  6  0  0  0
 16 17  1  0  0  0  0
 15 18  1  0  0  0  0
 18 19  1  1  0  0  0
 18 20  1  0  0  0  0
 20 21  1  6  0  0  0
 20 22  1  0  0  0  0
 13 22  1  0  0  0  0
 22 23  1  1  0  0  0
  2 24  1  0  0  0  0
 24 25  2  0  0  0  0
 24 26  1  0  0  0  0
M  END

     RDKit          3D

 52 52  0  0  0  0  0  0  0  0999 V2000
    7.2041   -0.0354    0.4912 N   0  0  0  0  0  0  0  0  0  0  0  0
    5.9078    0.5227    0.1578 C   0  0  1  0  0  0  0  0  0  0  0  0
    5.1309    0.7365    1.4595 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.5094    1.4276    1.1124 S   0  0  0  0  0  0  0  0  0  0  0  0
    2.4749    0.2344    0.2002 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.2102   -0.9286    1.1407 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.3624   -1.9882    0.5084 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0218   -1.4856    0.0830 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7622   -2.5748   -0.5293 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2444   -3.7510   -0.6257 N   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9680   -4.7632   -1.1928 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4171   -2.3314   -1.1496 S   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9247   -0.6109   -0.9087 C   0  0  2  0  0  0  0  0  0  0  0  0
   -3.0300   -0.3423    0.4232 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5251    0.8714    0.7834 C   0  0  2  0  0  0  0  0  0  0  0  0
   -4.6926    0.7501    1.7747 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.0985    2.0550    2.0557 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.8980    1.7998   -0.3121 C   0  0  1  0  0  0  0  0  0  0  0  0
   -2.8364    2.6958   -0.5793 O   0  0  0  0  0  0  0  0  0  0  0  0
   -4.4165    1.1664   -1.5549 C   0  0  2  0  0  0  0  0  0  0  0  0
   -5.7165    1.5502   -1.8723 O   0  0  0  0  0  0  0  0  0  0  0  0
   -4.2730   -0.3423   -1.5519 C   0  0  1  0  0  0  0  0  0  0  0  0
   -4.3591   -0.8649   -2.8343 O   0  0  0  0  0  0  0  0  0  0  0  0
    6.1211    1.8185   -0.5332 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.1313    2.4802   -0.9152 O   0  0  0  0  0  0  0  0  0  0  0  0
    7.3985    2.3069   -0.7621 O   0  0  0  0  0  0  0  0  0  0  0  0
    7.2055   -0.4493    1.4550 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.4857   -0.7725   -0.1635 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.3203   -0.1796   -0.4556 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.6794    1.4711    2.0878 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.0887   -0.2085    2.0260 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.5293    0.7642   -0.0325 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.9733   -0.1006   -0.7269 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.1775   -1.3750    1.4493 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.7081   -0.5202    2.0424 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.8948   -2.4370   -0.3565 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.2396   -2.8036    1.2476 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.1511   -0.6434   -0.6340 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5241   -1.0784    0.9698 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0772   -4.9197   -2.1808 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1473    0.0398   -1.3654 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7193    1.3886    1.3876 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.4929    0.1123    1.3934 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.2171    0.3476    2.7120 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.0767    2.0894    2.2814 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.7210    2.4713    0.0769 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.2732    3.4377   -1.0965 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.7660    1.5220   -2.4077 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.6962    2.3433   -2.4583 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.0914   -0.7437   -0.9219 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.1533   -1.8200   -2.7876 H   0  0  0  0  0  0  0  0  0  0  0  0
    8.1922    1.6674   -0.8250 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  3  4  1  0
  4  5  1  0
  5  6  1  0
  6  7  1  0
  7  8  1  0
  8  9  1  0
  9 12  1  0
 12 13  1  0
 13 14  1  0
 14 15  1  0
 15 16  1  0
 16 17  1  0
 15 18  1  0
 18 19  1  0
 18 20  1  0
 20 21  1  0
 20 22  1  0
 22 23  1  0
  9 10  2  0
 10 11  1  0
  2 24  1  0
 24 26  1  0
 24 25  2  0
 22 13  1  0
  1 27  1  0
  1 28  1  0
  2 29  1  6
  3 30  1  0
  3 31  1  0
  5 32  1  0
  5 33  1  0
  6 34  1  0
  6 35  1  0
  7 36  1  0
  7 37  1  0
  8 38  1  0
  8 39  1  0
 13 41  1  6
 15 42  1  1
 16 43  1  0
 16 44  1  0
 17 45  1  0
 18 46  1  1
 19 47  1  0
 20 48  1  6
 21 49  1  0
 22 50  1  1
 23 51  1  0
 11 40  1  0
 26 52  1  0
M  END


  Mrv1652309042223312D          

 26 26  0  0  1  0            999 V2000
    2.8579   -1.6500    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    2.8579   -2.4750    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    2.1434   -2.8875    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4289   -2.4750    0.0000 S   0  0  0  0  0  0  0  0  0  0  0  0
    0.7145   -2.8875    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0000   -2.4750    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7145   -2.8875    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4289   -2.4750    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1434   -2.8875    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1434   -3.7125    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8579   -4.1250    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8579   -2.4750    0.0000 S   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5724   -2.8875    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
   -3.5724   -3.7125    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -4.2868   -4.1250    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
   -4.2868   -4.9500    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.0013   -5.3625    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -5.0013   -3.7125    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   -5.7158   -4.1250    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -5.0013   -2.8875    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
   -5.7158   -2.4750    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -4.2868   -2.4750    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   -4.2868   -1.6500    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.5724   -2.8875    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.2868   -2.4750    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.5724   -3.7125    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  2  1  1  6  0  0  0
  2  3  1  0  0  0  0
  3  4  1  0  0  0  0
  4  5  1  0  0  0  0
  5  6  1  0  0  0  0
  6  7  1  0  0  0  0
  7  8  1  0  0  0  0
  8  9  1  0  0  0  0
  9 10  2  0  0  0  0
 10 11  1  0  0  0  0
  9 12  1  0  0  0  0
 13 12  1  6  0  0  0
 13 14  1  0  0  0  0
 14 15  1  0  0  0  0
 15 16  1  6  0  0  0
 16 17  1  0  0  0  0
 15 18  1  0  0  0  0
 18 19  1  1  0  0  0
 18 20  1  0  0  0  0
 20 21  1  6  0  0  0
 20 22  1  0  0  0  0
 13 22  1  0  0  0  0
 22 23  1  1  0  0  0
  2 24  1  0  0  0  0
 24 25  2  0  0  0  0
 24 26  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0202330

> <DATABASE_NAME>
NP-MRD

> <SMILES>
N[C@@H](CSCCCC\C(S[C@@H]1O[C@H](CO)[C@@H](O)[C@H](O)[C@H]1O)=N\O)C(O)=O

> <INCHI_IDENTIFIER>
InChI=1S/C14H26N2O8S2/c15-7(13(21)22)6-25-4-2-1-3-9(16-23)26-14-12(20)11(19)10(18)8(5-17)24-14/h7-8,10-12,14,17-20,23H,1-6,15H2,(H,21,22)/b16-9-/t7-,8+,10+,11-,12+,14-/m0/s1

> <INCHI_KEY>
HXXWOTACTCHYKM-BZIKKZRNSA-N

> <FORMULA>
C14H26N2O8S2

> <MOLECULAR_WEIGHT>
414.49

> <EXACT_MASS>
414.113058153

> <JCHEM_ACCEPTOR_COUNT>
10

> <JCHEM_ATOM_COUNT>
52

> <JCHEM_AVERAGE_POLARIZABILITY>
42.07503152311001

> <JCHEM_BIOAVAILABILITY>
0

> <JCHEM_DONOR_COUNT>
7

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
(2R)-2-amino-3-{[(5Z)-5-(hydroxyimino)-5-{[(2S,3R,4S,5S,6R)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]sulfanyl}pentyl]sulfanyl}propanoic acid

> <JCHEM_LOGP>
-3.953110271315048

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
1

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA>
9.782927956701936

> <JCHEM_PKA_STRONGEST_ACIDIC>
2.167597981965043

> <JCHEM_PKA_STRONGEST_BASIC>
8.936243490545591

> <JCHEM_POLAR_SURFACE_AREA>
186.05999999999997

> <JCHEM_REFRACTIVITY>
95.8534

> <JCHEM_ROTATABLE_BOND_COUNT>
11

> <JCHEM_RULE_OF_FIVE>
0

> <JCHEM_TRADITIONAL_IUPAC>
(2R)-2-amino-3-{[(5Z)-5-(hydroxyimino)-5-{[(2S,3R,4S,5S,6R)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]sulfanyl}pentyl]sulfanyl}propanoic acid

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 04-SEP-22   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   04-SEP-22         0                                  
HETATM    1  N   UNK     0       5.335  -3.080   0.000  0.00  0.00           N+0
HETATM    2  C   UNK     0       5.335  -4.620   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0       4.001  -5.390   0.000  0.00  0.00           C+0
HETATM    4  S   UNK     0       2.667  -4.620   0.000  0.00  0.00           S+0
HETATM    5  C   UNK     0       1.334  -5.390   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0       0.000  -4.620   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0      -1.334  -5.390   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0      -2.667  -4.620   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0      -4.001  -5.390   0.000  0.00  0.00           C+0
HETATM   10  N   UNK     0      -4.001  -6.930   0.000  0.00  0.00           N+0
HETATM   11  O   UNK     0      -5.335  -7.700   0.000  0.00  0.00           O+0
HETATM   12  S   UNK     0      -5.335  -4.620   0.000  0.00  0.00           S+0
HETATM   13  C   UNK     0      -6.668  -5.390   0.000  0.00  0.00           C+0
HETATM   14  O   UNK     0      -6.668  -6.930   0.000  0.00  0.00           O+0
HETATM   15  C   UNK     0      -8.002  -7.700   0.000  0.00  0.00           C+0
HETATM   16  C   UNK     0      -8.002  -9.240   0.000  0.00  0.00           C+0
HETATM   17  O   UNK     0      -9.336 -10.010   0.000  0.00  0.00           O+0
HETATM   18  C   UNK     0      -9.336  -6.930   0.000  0.00  0.00           C+0
HETATM   19  O   UNK     0     -10.669  -7.700   0.000  0.00  0.00           O+0
HETATM   20  C   UNK     0      -9.336  -5.390   0.000  0.00  0.00           C+0
HETATM   21  O   UNK     0     -10.669  -4.620   0.000  0.00  0.00           O+0
HETATM   22  C   UNK     0      -8.002  -4.620   0.000  0.00  0.00           C+0
HETATM   23  O   UNK     0      -8.002  -3.080   0.000  0.00  0.00           O+0
HETATM   24  C   UNK     0       6.668  -5.390   0.000  0.00  0.00           C+0
HETATM   25  O   UNK     0       8.002  -4.620   0.000  0.00  0.00           O+0
HETATM   26  O   UNK     0       6.668  -6.930   0.000  0.00  0.00           O+0
CONECT    1    2                                                            
CONECT    2    1    3   24                                                  
CONECT    3    2    4                                                       
CONECT    4    3    5                                                       
CONECT    5    4    6                                                       
CONECT    6    5    7                                                       
CONECT    7    6    8                                                       
CONECT    8    7    9                                                       
CONECT    9    8   10   12                                                  
CONECT   10    9   11                                                       
CONECT   11   10                                                            
CONECT   12    9   13                                                       
CONECT   13   12   14   22                                                  
CONECT   14   13   15                                                       
CONECT   15   14   16   18                                                  
CONECT   16   15   17                                                       
CONECT   17   16                                                            
CONECT   18   15   19   20                                                  
CONECT   19   18                                                            
CONECT   20   18   21   22                                                  
CONECT   21   20                                                            
CONECT   22   20   13   23                                                  
CONECT   23   22                                                            
CONECT   24    2   25   26                                                  
CONECT   25   24                                                            
CONECT   26   24                                                            
MASTER        0    0    0    0    0    0    0    0   26    0   52    0
END

View in JSmol

Synonyms

Value	Source
S-[5-(b-D-Glucopyranosylthio)-5-(hydroxyimino)pentyl]-L-cysteine	Generator
S-[5-(Β-D-glucopyranosylthio)-5-(hydroxyimino)pentyl]-L-cysteine	Generator

Chemical Formula

C₁₄H₂₆N₂O₈S₂

Average Mass

414.4900 Da

Monoisotopic Mass

414.11306 Da

IUPAC Name

(2R)-2-amino-3-{[(5Z)-5-(hydroxyimino)-5-{[(2S,3R,4S,5S,6R)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]sulfanyl}pentyl]sulfanyl}propanoic acid

Traditional Name

(2R)-2-amino-3-{[(5Z)-5-(hydroxyimino)-5-{[(2S,3R,4S,5S,6R)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]sulfanyl}pentyl]sulfanyl}propanoic acid

CAS Registry Number

Not Available

SMILES

N[C@@H](CSCCCC\C(S[C@@H]1O[C@H](CO)[C@@H](O)[C@H](O)[C@H]1O)=N\O)C(O)=O

InChI Identifier

InChI=1S/C14H26N2O8S2/c15-7(13(21)22)6-25-4-2-1-3-9(16-23)26-14-12(20)11(19)10(18)8(5-17)24-14/h7-8,10-12,14,17-20,23H,1-6,15H2,(H,21,22)/b16-9-/t7-,8+,10+,11-,12+,14-/m0/s1

InChI Key

HXXWOTACTCHYKM-BZIKKZRNSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Eruca vesicaria	LOTUS Database	35616633

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as desulfoglucosinolates. These are derivatives of glucosinolates which arise by removal of the sulfonate moiety.

Kingdom

Organic compounds

Super Class

Organic oxygen compounds

Class

Organooxygen compounds

Sub Class

Carbohydrates and carbohydrate conjugates

Direct Parent

Desulfoglucosinolates

Alternative Parents

Substituents

Desulfoglucosinolate
L-cysteine-s-conjugate
Cysteine or derivatives
Glycosyl compound
S-glycosyl compound
Alpha-amino acid
Alpha-amino acid or derivatives
L-alpha-amino acid
Oxane
Monothioacetal
Amino acid
Amino acid or derivatives
Secondary alcohol
Carboxylic acid derivative
Carboxylic acid
Oxacycle
Monocarboxylic acid or derivatives
Organoheterocyclic compound
Dialkylthioether
Polyol
Sulfenyl compound
Thioether
Organic oxide
Primary aliphatic amine
Organic nitrogen compound
Amine
Organonitrogen compound
Organosulfur compound
Hydrocarbon derivative
Carbonyl group
Primary alcohol
Primary amine
Alcohol
Aliphatic heteromonocyclic compound

Molecular Framework

Aliphatic heteromonocyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	-4	ChemAxon
pKa (Strongest Acidic)	2.17	ChemAxon
pKa (Strongest Basic)	8.94	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	10	ChemAxon
Hydrogen Donor Count	7	ChemAxon
Polar Surface Area	186.06 Å²	ChemAxon
Rotatable Bond Count	11	ChemAxon
Refractivity	95.85 m³·mol⁻¹	ChemAxon
Polarizability	42.08 Å³	ChemAxon
Number of Rings	1	ChemAxon
Bioavailability	No	ChemAxon
Rule of Five	No	ChemAxon
Ghose Filter	No	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

Not Available

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

102156207

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

LOTUS database [Link]

Showing NP-Card for (2r)-2-amino-3-{[(5z)-5-(hydroxyimino)-5-{[(2s,3r,4s,5s,6r)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]sulfanyl}pentyl]sulfanyl}propanoic acid (NP0202330)

MOL for NP0202330 ((2r)-2-amino-3-{[(5z)-5-(hydroxyimino)-5-{[(2s,3r,4s,5s,6r)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]sulfanyl}pentyl]sulfanyl}propanoic acid)

3D MOL for NP0202330 ((2r)-2-amino-3-{[(5z)-5-(hydroxyimino)-5-{[(2s,3r,4s,5s,6r)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]sulfanyl}pentyl]sulfanyl}propanoic acid)

3D SDF for NP0202330 ((2r)-2-amino-3-{[(5z)-5-(hydroxyimino)-5-{[(2s,3r,4s,5s,6r)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]sulfanyl}pentyl]sulfanyl}propanoic acid)

3D-SDF for NP0202330 ((2r)-2-amino-3-{[(5z)-5-(hydroxyimino)-5-{[(2s,3r,4s,5s,6r)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]sulfanyl}pentyl]sulfanyl}propanoic acid)

PDB for NP0202330 ((2r)-2-amino-3-{[(5z)-5-(hydroxyimino)-5-{[(2s,3r,4s,5s,6r)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]sulfanyl}pentyl]sulfanyl}propanoic acid)

3D PDB for NP0202330 ((2r)-2-amino-3-{[(5z)-5-(hydroxyimino)-5-{[(2s,3r,4s,5s,6r)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]sulfanyl}pentyl]sulfanyl}propanoic acid)

SMILES for NP0202330 ((2r)-2-amino-3-{[(5z)-5-(hydroxyimino)-5-{[(2s,3r,4s,5s,6r)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]sulfanyl}pentyl]sulfanyl}propanoic acid)

INCHI for NP0202330 ((2r)-2-amino-3-{[(5z)-5-(hydroxyimino)-5-{[(2s,3r,4s,5s,6r)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]sulfanyl}pentyl]sulfanyl}propanoic acid)

Structure for NP0202330 ((2r)-2-amino-3-{[(5z)-5-(hydroxyimino)-5-{[(2s,3r,4s,5s,6r)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]sulfanyl}pentyl]sulfanyl}propanoic acid)

3D Structure for NP0202330 ((2r)-2-amino-3-{[(5z)-5-(hydroxyimino)-5-{[(2s,3r,4s,5s,6r)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]sulfanyl}pentyl]sulfanyl}propanoic acid)