NP-MRD: Showing NP-Card for 3-(3-methylbut-2-en-1-yl)purin-6-amine (NP0201533)

Jump To Section:

Identification Spectra BioTaxonomy ChemoTaxonomy Physical properties Links References XML

Record Information

Version

2.0

Created at

2022-09-04 20:35:42 UTC

Updated at

2022-09-04 20:35:43 UTC

NP-MRD ID

NP0201533

Secondary Accession Numbers

None

Natural Product Identification

Common Name

3-(3-methylbut-2-en-1-yl)purin-6-amine

Description

3-(3-Methylbut-2-en-1-yl)-3H-purin-6-amine belongs to the class of organic compounds known as 6-aminopurines. These are purines that carry an amino group at position 6. Purine is a bicyclic aromatic compound made up of a pyrimidine ring fused to an imidazole ring. 3-(3-methylbut-2-en-1-yl)purin-6-amine is found in Bridelia balansae and Gleditsia triacanthos. 3-(3-Methylbut-2-en-1-yl)-3H-purin-6-amine is a strong basic compound (based on its pKa).

Structure

MOL 3D MOL SDF PDB SMILES InChI

L21
  Mrv0541 02241213512D          

 15 16  0  0  0  0            999 V2000
    0.6472    0.2218    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.6472    1.0468    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0672    1.4593    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.3617    1.4593    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7817   -2.2532    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7817   -1.4282    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4962   -1.0157    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2808   -1.2706    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4962   -0.1907    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2808    0.0642    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7657   -0.6032    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7817    1.0468    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7817    0.2218    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0672   -0.1907    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0672   -1.0157    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  2  0  0  0  0
  2  4  1  0  0  0  0
  3 12  1  0  0  0  0
  5  6  1  0  0  0  0
  6  7  2  0  0  0  0
  6 15  1  0  0  0  0
  7  8  1  0  0  0  0
  7  9  1  0  0  0  0
  8 11  2  0  0  0  0
  9 10  2  0  0  0  0
  9 13  1  0  0  0  0
 10 11  1  0  0  0  0
 12 13  1  0  0  0  0
 13 14  1  0  0  0  0
 14 15  2  0  0  0  0
M  END
> <DATABASE_ID>
NP0201533

> <DATABASE_NAME>
NP-MRD

> <SMILES>
CC(C)=CCN1C=NC(N)=C2N=CN=C12

> <INCHI_IDENTIFIER>
InChI=1S/C10H13N5/c1-7(2)3-4-15-6-14-9(11)8-10(15)13-5-12-8/h3,5-6H,4,11H2,1-2H3

> <INCHI_KEY>
BEPGTHDUUROBHM-UHFFFAOYSA-N

> <FORMULA>
C10H13N5

> <MOLECULAR_WEIGHT>
203.2437

> <EXACT_MASS>
203.117095441

> <JCHEM_ACCEPTOR_COUNT>
4

> <JCHEM_AVERAGE_POLARIZABILITY>
21.80005985610817

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
1

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
1

> <JCHEM_IUPAC>
3-(3-methylbut-2-en-1-yl)-3H-purin-6-amine

> <ALOGPS_LOGP>
0.06

> <JCHEM_LOGP>
1.0539094253333332

> <ALOGPS_LOGS>
-2.68

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
2

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA_STRONGEST_ACIDIC>
18.17627205869357

> <JCHEM_PKA_STRONGEST_BASIC>
3.927264309750442

> <JCHEM_POLAR_SURFACE_AREA>
69.62

> <JCHEM_REFRACTIVITY>
60.6142

> <JCHEM_ROTATABLE_BOND_COUNT>
2

> <JCHEM_RULE_OF_FIVE>
1

> <ALOGPS_SOLUBILITY>
4.24e-01 g/l

> <JCHEM_TRADITIONAL_IUPAC>
3-(3-methylbut-2-en-1-yl)purin-6-amine

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 24-FEB-12   NONE
TITLE     NULL                                                        
COMPND    MOLECULE: L21                                               
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   24-FEB-12         0                                  
HETATM    1  C   UNK     0       1.208   0.414   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0       1.208   1.954   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0      -0.125   2.724   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0       2.542   2.724   0.000  0.00  0.00           C+0
HETATM    5  N   UNK     0      -1.459  -4.206   0.000  0.00  0.00           N+0
HETATM    6  C   UNK     0      -1.459  -2.666   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0      -2.793  -1.896   0.000  0.00  0.00           C+0
HETATM    8  N   UNK     0      -4.257  -2.372   0.000  0.00  0.00           N+0
HETATM    9  C   UNK     0      -2.793  -0.356   0.000  0.00  0.00           C+0
HETATM   10  N   UNK     0      -4.257   0.120   0.000  0.00  0.00           N+0
HETATM   11  C   UNK     0      -5.163  -1.126   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0      -1.459   1.954   0.000  0.00  0.00           C+0
HETATM   13  N   UNK     0      -1.459   0.414   0.000  0.00  0.00           N+0
HETATM   14  C   UNK     0      -0.125  -0.356   0.000  0.00  0.00           C+0
HETATM   15  N   UNK     0      -0.125  -1.896   0.000  0.00  0.00           N+0
CONECT    1    2                                                            
CONECT    2    1    3    4                                                  
CONECT    3    2   12                                                       
CONECT    4    2                                                            
CONECT    5    6                                                            
CONECT    6    5    7   15                                                  
CONECT    7    6    8    9                                                  
CONECT    8    7   11                                                       
CONECT    9    7   10   13                                                  
CONECT   10    9   11                                                       
CONECT   11    8   10                                                       
CONECT   12    3   13                                                       
CONECT   13    9   12   14                                                  
CONECT   14   13   15                                                       
CONECT   15    6   14                                                       
MASTER        0    0    0    0    0    0    0    0   15    0   32    0
END

View in JSmol

Synonyms

Not Available

Chemical Formula

C₁₀H₁₃N₅

Average Mass

203.2437 Da

Monoisotopic Mass

203.11710 Da

IUPAC Name

3-(3-methylbut-2-en-1-yl)-3H-purin-6-amine

Traditional Name

3-(3-methylbut-2-en-1-yl)purin-6-amine

CAS Registry Number

Not Available

SMILES

CC(C)=CCN1C=NC(N)=C2N=CN=C12

InChI Identifier

InChI=1S/C10H13N5/c1-7(2)3-4-15-6-14-9(11)8-10(15)13-5-12-8/h3,5-6H,4,11H2,1-2H3

InChI Key

BEPGTHDUUROBHM-UHFFFAOYSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Bridelia balansae	LOTUS Database	35616633
Gleditsia triacanthos	LOTUS Database	35616633

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as 6-aminopurines. These are purines that carry an amino group at position 6. Purine is a bicyclic aromatic compound made up of a pyrimidine ring fused to an imidazole ring.

Kingdom

Organic compounds

Super Class

Organoheterocyclic compounds

Class

Imidazopyrimidines

Sub Class

Purines and purine derivatives

Direct Parent

6-aminopurines

Alternative Parents

Substituents

6-aminopurine
Aminopyrimidine
Imidolactam
Pyrimidine
Heteroaromatic compound
Imidazole
Azole
Azacycle
Organic nitrogen compound
Organopnictogen compound
Hydrocarbon derivative
Primary amine
Organonitrogen compound
Amine
Aromatic heteropolycyclic compound

Molecular Framework

Aromatic heteropolycyclic compounds

External Descriptors

6-aminopurines (CHEBI:9658 )

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	0.06	ALOGPS
logP	1.05	ChemAxon
logS	-2.7	ALOGPS
pKa (Strongest Acidic)	18.18	ChemAxon
pKa (Strongest Basic)	3.93	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	4	ChemAxon
Hydrogen Donor Count	1	ChemAxon
Polar Surface Area	69.62 Å²	ChemAxon
Rotatable Bond Count	2	ChemAxon
Refractivity	60.61 m³·mol⁻¹	ChemAxon
Polarizability	21.8 Å³	ChemAxon
Number of Rings	2	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	Yes	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

DB08074

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

Not Available

KEGG Compound ID

C08435

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

45070

PDB ID

L21

ChEBI ID

9658

Good Scents ID

Not Available

References

General References

LOTUS database [Link]

Showing NP-Card for 3-(3-methylbut-2-en-1-yl)purin-6-amine (NP0201533)

MOL for NP0201533 (3-(3-methylbut-2-en-1-yl)purin-6-amine)

3D MOL for NP0201533 (3-(3-methylbut-2-en-1-yl)purin-6-amine)

3D SDF for NP0201533 (3-(3-methylbut-2-en-1-yl)purin-6-amine)

3D-SDF for NP0201533 (3-(3-methylbut-2-en-1-yl)purin-6-amine)

PDB for NP0201533 (3-(3-methylbut-2-en-1-yl)purin-6-amine)

3D PDB for NP0201533 (3-(3-methylbut-2-en-1-yl)purin-6-amine)

SMILES for NP0201533 (3-(3-methylbut-2-en-1-yl)purin-6-amine)

INCHI for NP0201533 (3-(3-methylbut-2-en-1-yl)purin-6-amine)

Structure for NP0201533 (3-(3-methylbut-2-en-1-yl)purin-6-amine)

3D Structure for NP0201533 (3-(3-methylbut-2-en-1-yl)purin-6-amine)