NP-MRD: Showing NP-Card for methyl 5-hydroxy-2-(2-methylbut-3-en-2-yl)-3-oxo-5-phenylpent-4-enoate (NP0201403)

Jump To Section:

Identification Spectra BioTaxonomy ChemoTaxonomy Physical properties Links References XML

Record Information

Version

2.0

Created at

2022-09-04 20:26:21 UTC

Updated at

2022-09-04 20:26:21 UTC

NP-MRD ID

NP0201403

Secondary Accession Numbers

None

Natural Product Identification

Common Name

methyl 5-hydroxy-2-(2-methylbut-3-en-2-yl)-3-oxo-5-phenylpent-4-enoate

Description

Methyl 5-hydroxy-2-(2-methylbut-3-en-2-yl)-3-oxo-5-phenylpent-4-enoate belongs to the class of organic compounds known as cinnamic acids and derivatives. These are organic aromatic compounds containing a benzene and a carboxylic acid group (or a derivative thereof) forming 3-phenylprop-2-enoic acid. Methyl 5-hydroxy-2-(2-methylbut-3-en-2-yl)-3-oxo-5-phenylpent-4-enoate is an extremely weak basic (essentially neutral) compound (based on its pKa).

Structure

MOL 3D MOL SDF PDB SMILES InChI

     RDKit          3D

 41 41  0  0  0  0  0  0  0  0999 V2000
   -4.1746   -1.8209   -0.5645 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.3331   -1.0027   -1.1520 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9932   -0.7775   -0.5623 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0518   -1.8835   -0.9346 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1906   -0.8623    0.9513 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4827    0.6131   -0.9216 C   0  0  2  0  0  0  0  0  0  0  0  0
   -0.2942    0.8938   -0.0985 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3875    1.7666    0.8039 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.9914    0.2385   -0.2417 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.0250    0.5237    0.5384 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.7876    1.5087    1.5171 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.3204   -0.0979    0.4368 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.6851   -1.0610   -0.4599 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.9638   -1.6048   -0.4833 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.9195   -1.1985    0.3944 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.5887   -0.2302    1.3123 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.3174    0.3031    1.3275 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.5235    1.6210   -0.5137 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.6043    1.1849   -0.0763 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3388    2.9845   -0.6010 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.3883    3.8429   -0.1885 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.9393   -2.3550    0.3510 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.1783   -2.0203   -0.9630 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5967   -0.4902   -2.0561 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6395   -2.8414   -1.0423 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5988   -1.7331   -1.9324 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3214   -2.1038   -0.1422 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9558   -1.8997    1.2983 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.2200   -0.6760    1.2647 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4285   -0.2195    1.4148 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2195    0.6989   -1.9736 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.1677   -0.5035   -1.0005 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.7029    1.1274    2.4679 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.9568   -1.4063   -1.1681 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.2171   -2.3680   -1.2101 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.9166   -1.6205    0.3784 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.3110    0.1374    2.0424 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.0916    1.0730    2.0739 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.3352    3.2691   -0.0233 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.1571    4.4036    0.7237 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.6100    4.5862   -0.9872 H   0  0  0  0  0  0  0  0  0  0  0  0
 21 20  1  0
 20 18  1  0
 18 19  2  0
 18  6  1  0
  6  7  1  0
  7  8  2  0
  7  9  1  0
  9 10  2  0
 10 11  1  0
 10 12  1  0
 12 13  2  0
 13 14  1  0
 14 15  2  0
 15 16  1  0
 16 17  2  0
  6  3  1  0
  3  4  1  0
  3  5  1  0
  3  2  1  0
  2  1  2  3
 17 12  1  0
 21 39  1  0
 21 40  1  0
 21 41  1  0
  6 31  1  6
  9 32  1  0
 11 33  1  0
 13 34  1  0
 14 35  1  0
 15 36  1  0
 16 37  1  0
 17 38  1  0
  4 25  1  0
  4 26  1  0
  4 27  1  0
  5 28  1  0
  5 29  1  0
  5 30  1  0
  2 24  1  0
  1 22  1  0
  1 23  1  0
M  END


  Mrv1533004241522542D          

 21 21  0  0  0  0            999 V2000
    1.7309   -4.4270    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.1434   -3.7125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.5559   -2.9980    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4289   -3.3000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7145   -3.7125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.8579   -4.1250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.5724   -3.7125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.5724   -2.8875    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.2868   -4.1250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.0013   -3.7125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.7158   -4.1250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.4302   -3.7125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.1447   -4.1250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.1447   -4.9500    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.4302   -5.3625    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.7158   -4.9500    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.0013   -2.8875    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.8579   -4.9500    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.5724   -5.3625    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.1434   -5.3625    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.1434   -6.1875    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  1  0  0  0  0
  2  4  1  0  0  0  0
  4  5  2  0  0  0  0
  2  6  1  0  0  0  0
  6  7  1  0  0  0  0
  7  8  2  0  0  0  0
  9  7  1  4  0  0  0
  9 10  2  0  0  0  0
 10 11  1  0  0  0  0
 11 12  2  0  0  0  0
 12 13  1  0  0  0  0
 13 14  2  0  0  0  0
 14 15  1  0  0  0  0
 15 16  2  0  0  0  0
 11 16  1  0  0  0  0
 10 17  1  0  0  0  0
  6 18  1  0  0  0  0
 18 19  2  0  0  0  0
 18 20  1  0  0  0  0
 20 21  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0201403

> <DATABASE_NAME>
NP-MRD

> <SMILES>
COC(=O)C(C(=O)C=C(O)C1=CC=CC=C1)C(C)(C)C=C

> <INCHI_IDENTIFIER>
InChI=1S/C17H20O4/c1-5-17(2,3)15(16(20)21-4)14(19)11-13(18)12-9-7-6-8-10-12/h5-11,15,18H,1H2,2-4H3

> <INCHI_KEY>
LMDDTBBMVTYWJQ-UHFFFAOYSA-N

> <FORMULA>
C17H20O4

> <MOLECULAR_WEIGHT>
288.343

> <EXACT_MASS>
288.136159124

> <JCHEM_ACCEPTOR_COUNT>
3

> <JCHEM_ATOM_COUNT>
41

> <JCHEM_AVERAGE_POLARIZABILITY>
30.4516748555549

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
1

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
1

> <JCHEM_IUPAC>
methyl 5-hydroxy-2-(2-methylbut-3-en-2-yl)-3-oxo-5-phenylpent-4-enoate

> <ALOGPS_LOGP>
2.76

> <JCHEM_LOGP>
3.4654892239999997

> <ALOGPS_LOGS>
-3.97

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
1

> <JCHEM_PHYSIOLOGICAL_CHARGE>
-1

> <JCHEM_PKA>
15.162656697029373

> <JCHEM_PKA_STRONGEST_ACIDIC>
6.605823407372186

> <JCHEM_PKA_STRONGEST_BASIC>
-5.926905756984206

> <JCHEM_POLAR_SURFACE_AREA>
63.599999999999994

> <JCHEM_REFRACTIVITY>
82.4608

> <JCHEM_ROTATABLE_BOND_COUNT>
7

> <JCHEM_RULE_OF_FIVE>
1

> <ALOGPS_SOLUBILITY>
3.10e-02 g/l

> <JCHEM_TRADITIONAL_IUPAC>
methyl 5-hydroxy-2-(2-methylbut-3-en-2-yl)-3-oxo-5-phenylpent-4-enoate

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 24-APR-15   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   24-APR-15         0                                  
HETATM    1  C   UNK     0       3.231  -8.264   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0       4.001  -6.930   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0       4.771  -5.596   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0       2.667  -6.160   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0       1.334  -6.930   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0       5.335  -7.700   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0       6.668  -6.930   0.000  0.00  0.00           C+0
HETATM    8  O   UNK     0       6.668  -5.390   0.000  0.00  0.00           O+0
HETATM    9  C   UNK     0       8.002  -7.700   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0       9.336  -6.930   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0      10.669  -7.700   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0      12.003  -6.930   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0      13.337  -7.700   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0      13.337  -9.240   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0      12.003 -10.010   0.000  0.00  0.00           C+0
HETATM   16  C   UNK     0      10.669  -9.240   0.000  0.00  0.00           C+0
HETATM   17  O   UNK     0       9.336  -5.390   0.000  0.00  0.00           O+0
HETATM   18  C   UNK     0       5.335  -9.240   0.000  0.00  0.00           C+0
HETATM   19  O   UNK     0       6.668 -10.010   0.000  0.00  0.00           O+0
HETATM   20  O   UNK     0       4.001 -10.010   0.000  0.00  0.00           O+0
HETATM   21  C   UNK     0       4.001 -11.550   0.000  0.00  0.00           C+0
CONECT    1    2                                                            
CONECT    2    1    3    4    6                                             
CONECT    3    2                                                            
CONECT    4    2    5                                                       
CONECT    5    4                                                            
CONECT    6    2    7   18                                                  
CONECT    7    6    8    9                                                  
CONECT    8    7                                                            
CONECT    9    7   10                                                       
CONECT   10    9   11   17                                                  
CONECT   11   10   12   16                                                  
CONECT   12   11   13                                                       
CONECT   13   12   14                                                       
CONECT   14   13   15                                                       
CONECT   15   14   16                                                       
CONECT   16   15   11                                                       
CONECT   17   10                                                            
CONECT   18    6   19   20                                                  
CONECT   19   18                                                            
CONECT   20   18   21                                                       
CONECT   21   20                                                            
MASTER        0    0    0    0    0    0    0    0   21    0   42    0
END

View in JSmol

Synonyms

Value	Source
Methyl 5-hydroxy-2-(2-methylbut-3-en-2-yl)-3-oxo-5-phenylpent-4-enoic acid	Generator

Chemical Formula

C₁₇H₂₀O₄

Average Mass

288.3430 Da

Monoisotopic Mass

288.13616 Da

IUPAC Name

methyl 5-hydroxy-2-(2-methylbut-3-en-2-yl)-3-oxo-5-phenylpent-4-enoate

Traditional Name

methyl 5-hydroxy-2-(2-methylbut-3-en-2-yl)-3-oxo-5-phenylpent-4-enoate

CAS Registry Number

Not Available

SMILES

COC(=O)C(C(=O)C=C(O)C1=CC=CC=C1)C(C)(C)C=C

InChI Identifier

InChI=1S/C17H20O4/c1-5-17(2,3)15(16(20)21-4)14(19)11-13(18)12-9-7-6-8-10-12/h5-11,15,18H,1H2,2-4H3

InChI Key

LMDDTBBMVTYWJQ-UHFFFAOYSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Not Available

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as cinnamic acids and derivatives. These are organic aromatic compounds containing a benzene and a carboxylic acid group (or a derivative thereof) forming 3-phenylprop-2-enoic acid.

Kingdom

Organic compounds

Super Class

Phenylpropanoids and polyketides

Class

Cinnamic acids and derivatives

Sub Class

Not Available

Direct Parent

Cinnamic acids and derivatives

Alternative Parents

Substituents

Cinnamic acid or derivatives
Styrene
Beta-keto acid
Fatty acid ester
Monocyclic benzene moiety
Fatty acyl
Benzenoid
1,3-dicarbonyl compound
Keto acid
Acryloyl-group
Vinylogous acid
Alpha,beta-unsaturated ketone
Methyl ester
Enone
Carboxylic acid ester
Ketone
Enol
Carboxylic acid derivative
Monocarboxylic acid or derivatives
Organooxygen compound
Organic oxygen compound
Carbonyl group
Hydrocarbon derivative
Organic oxide
Aromatic homomonocyclic compound

Molecular Framework

Aromatic homomonocyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	2.76	ALOGPS
logP	3.47	ChemAxon
logS	-4	ALOGPS
pKa (Strongest Acidic)	6.61	ChemAxon
pKa (Strongest Basic)	-5.9	ChemAxon
Physiological Charge	-1	ChemAxon
Hydrogen Acceptor Count	3	ChemAxon
Hydrogen Donor Count	1	ChemAxon
Polar Surface Area	63.6 Å²	ChemAxon
Rotatable Bond Count	7	ChemAxon
Refractivity	82.46 m³·mol⁻¹	ChemAxon
Polarizability	30.45 Å³	ChemAxon
Number of Rings	1	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	Yes	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

Not Available

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

53440837

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

LOTUS database [Link]

Showing NP-Card for methyl 5-hydroxy-2-(2-methylbut-3-en-2-yl)-3-oxo-5-phenylpent-4-enoate (NP0201403)

MOL for NP0201403 (methyl 5-hydroxy-2-(2-methylbut-3-en-2-yl)-3-oxo-5-phenylpent-4-enoate)

3D MOL for NP0201403 (methyl 5-hydroxy-2-(2-methylbut-3-en-2-yl)-3-oxo-5-phenylpent-4-enoate)

3D SDF for NP0201403 (methyl 5-hydroxy-2-(2-methylbut-3-en-2-yl)-3-oxo-5-phenylpent-4-enoate)

3D-SDF for NP0201403 (methyl 5-hydroxy-2-(2-methylbut-3-en-2-yl)-3-oxo-5-phenylpent-4-enoate)

PDB for NP0201403 (methyl 5-hydroxy-2-(2-methylbut-3-en-2-yl)-3-oxo-5-phenylpent-4-enoate)

3D PDB for NP0201403 (methyl 5-hydroxy-2-(2-methylbut-3-en-2-yl)-3-oxo-5-phenylpent-4-enoate)

SMILES for NP0201403 (methyl 5-hydroxy-2-(2-methylbut-3-en-2-yl)-3-oxo-5-phenylpent-4-enoate)

INCHI for NP0201403 (methyl 5-hydroxy-2-(2-methylbut-3-en-2-yl)-3-oxo-5-phenylpent-4-enoate)

Structure for NP0201403 (methyl 5-hydroxy-2-(2-methylbut-3-en-2-yl)-3-oxo-5-phenylpent-4-enoate)

3D Structure for NP0201403 (methyl 5-hydroxy-2-(2-methylbut-3-en-2-yl)-3-oxo-5-phenylpent-4-enoate)