NP-MRD: Showing NP-Card for (2s,4'ar,4'br,8'ar,10'ar)-4'b,6,7,8',8',10'a-hexamethyl-2'-methylidene-3',4',4'a,5',6',8'a,9',10'-octahydro-3h-spiro[furo[3,2-c]pyran-2,1'-phenanthrene]-4,7'-dione (NP0200527)

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Record Information

Version

2.0

Created at

2022-09-04 19:23:25 UTC

Updated at

2022-09-04 19:23:25 UTC

NP-MRD ID

NP0200527

Secondary Accession Numbers

None

Natural Product Identification

Common Name

(2s,4'ar,4'br,8'ar,10'ar)-4'b,6,7,8',8',10'a-hexamethyl-2'-methylidene-3',4',4'a,5',6',8'a,9',10'-octahydro-3h-spiro[furo[3,2-c]pyran-2,1'-phenanthrene]-4,7'-dione

Description

Lygodinolide belongs to the class of organic compounds known as diterpene lactones. These are diterpenoids containing a lactone moiety. (2s,4'ar,4'br,8'ar,10'ar)-4'b,6,7,8',8',10'a-hexamethyl-2'-methylidene-3',4',4'a,5',6',8'a,9',10'-octahydro-3h-spiro[furo[3,2-c]pyran-2,1'-phenanthrene]-4,7'-dione is found in Lygodium flexuosum. (2s,4'ar,4'br,8'ar,10'ar)-4'b,6,7,8',8',10'a-hexamethyl-2'-methylidene-3',4',4'a,5',6',8'a,9',10'-octahydro-3h-spiro[furo[3,2-c]pyran-2,1'-phenanthrene]-4,7'-dione was first documented in 2012 (PMID: 23055636). Based on a literature review very few articles have been published on Lygodinolide.

Structure

MOL 3D MOL SDF PDB SMILES InChI


  Mrv1652309042221232D          

 31 35  0  0  1  0            999 V2000
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M  END

     RDKit          3D

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M  END


  Mrv1652309042221232D          

 31 35  0  0  1  0            999 V2000
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M  END
> <DATABASE_ID>
NP0200527

> <DATABASE_NAME>
NP-MRD

> <SMILES>
CC1=C(C)C2=C(C[C@]3(O2)C(=C)CC[C@@H]2[C@@]4(C)CCC(=O)C(C)(C)[C@@H]4CC[C@@]32C)C(=O)O1

> <INCHI_IDENTIFIER>
InChI=1S/C27H36O4/c1-15-8-9-20-25(6)12-11-21(28)24(4,5)19(25)10-13-26(20,7)27(15)14-18-22(31-27)16(2)17(3)30-23(18)29/h19-20H,1,8-14H2,2-7H3/t19-,20+,25-,26+,27-/m0/s1

> <INCHI_KEY>
ABBZZTOIFXCLFD-YJHFSHLRSA-N

> <FORMULA>
C27H36O4

> <MOLECULAR_WEIGHT>
424.581

> <EXACT_MASS>
424.261359639

> <JCHEM_ACCEPTOR_COUNT>
3

> <JCHEM_ATOM_COUNT>
67

> <JCHEM_AVERAGE_POLARIZABILITY>
48.421942135209065

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
0

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
1

> <JCHEM_IUPAC>
(2S,4'aR,4'bR,8'aR,10'aR)-4'b,6,7,8',8',10'a-hexamethyl-2'-methylidene-3,3',4,4',4'a,4'b,5',6',7',8',8'a,9',10',10'a-tetradecahydro-2'H-spiro[furo[3,2-c]pyran-2,1'-phenanthrene]-4,7'-dione

> <JCHEM_LOGP>
5.320291702666667

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
5

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA_STRONGEST_ACIDIC>
19.960814572218197

> <JCHEM_PKA_STRONGEST_BASIC>
-4.914965155202952

> <JCHEM_POLAR_SURFACE_AREA>
52.60000000000001

> <JCHEM_REFRACTIVITY>
122.0486

> <JCHEM_ROTATABLE_BOND_COUNT>
0

> <JCHEM_RULE_OF_FIVE>
0

> <JCHEM_TRADITIONAL_IUPAC>
(2S,4'aR,4'bR,8'aR,10'aR)-4'b,6,7,8',8',10'a-hexamethyl-2'-methylidene-3',4',4'a,5',6',8'a,9',10'-octahydro-3H-spiro[furo[3,2-c]pyran-2,1'-phenanthrene]-4,7'-dione

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 04-SEP-22   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   04-SEP-22         0                                  
HETATM    1  C   UNK     0       3.358   4.861   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0       4.663   4.043   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0       6.023   4.763   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0       7.328   3.945   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0       7.272   2.406   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0       8.577   1.588   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0       8.633   3.127   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0       9.938   2.309   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0      11.242   1.491   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0      11.186  -0.048   0.000  0.00  0.00           C+0
HETATM   11  O   UNK     0      12.491  -0.866   0.000  0.00  0.00           O+0
HETATM   12  C   UNK     0       9.825  -0.769   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0      10.771  -1.984   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0       8.793  -1.912   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0       8.521   0.049   0.000  0.00  0.00           C+0
HETATM   16  C   UNK     0       7.160  -0.672   0.000  0.00  0.00           C+0
HETATM   17  C   UNK     0       5.855   0.146   0.000  0.00  0.00           C+0
HETATM   18  C   UNK     0       5.911   1.685   0.000  0.00  0.00           C+0
HETATM   19  C   UNK     0       4.840   0.579   0.000  0.00  0.00           C+0
HETATM   20  C   UNK     0       4.606   2.504   0.000  0.00  0.00           C+0
HETATM   21  C   UNK     0       3.223   3.181   0.000  0.00  0.00           C+0
HETATM   22  C   UNK     0       2.152   2.075   0.000  0.00  0.00           C+0
HETATM   23  C   UNK     0       2.873   0.714   0.000  0.00  0.00           C+0
HETATM   24  C   UNK     0       2.055  -0.591   0.000  0.00  0.00           C+0
HETATM   25  C   UNK     0       2.775  -1.952   0.000  0.00  0.00           C+0
HETATM   26  C   UNK     0       0.516  -0.535   0.000  0.00  0.00           C+0
HETATM   27  C   UNK     0      -0.303  -1.839   0.000  0.00  0.00           C+0
HETATM   28  O   UNK     0      -0.205   0.826   0.000  0.00  0.00           O+0
HETATM   29  C   UNK     0       0.613   2.131   0.000  0.00  0.00           C+0
HETATM   30  O   UNK     0      -0.108   3.492   0.000  0.00  0.00           O+0
HETATM   31  O   UNK     0       4.390   0.979   0.000  0.00  0.00           O+0
CONECT    1    2                                                            
CONECT    2    1    3   20                                                  
CONECT    3    2    4                                                       
CONECT    4    3    5                                                       
CONECT    5    4    6   18                                                  
CONECT    6    5    7    8   15                                             
CONECT    7    6                                                            
CONECT    8    6    9                                                       
CONECT    9    8   10                                                       
CONECT   10    9   11   12                                                  
CONECT   11   10                                                            
CONECT   12   10   13   14   15                                             
CONECT   13   12                                                            
CONECT   14   12                                                            
CONECT   15   12    6   16                                                  
CONECT   16   15   17                                                       
CONECT   17   16   18                                                       
CONECT   18   17    5   19   20                                             
CONECT   19   18                                                            
CONECT   20   18    2   21   31                                             
CONECT   21   20   22                                                       
CONECT   22   21   23   29                                                  
CONECT   23   22   24   31                                                  
CONECT   24   23   25   26                                                  
CONECT   25   24                                                            
CONECT   26   24   27   28                                                  
CONECT   27   26                                                            
CONECT   28   26   29                                                       
CONECT   29   28   22   30                                                  
CONECT   30   29                                                            
CONECT   31   23   20                                                       
MASTER        0    0    0    0    0    0    0    0   31    0   70    0
END

View in JSmol

Synonyms

Not Available

Chemical Formula

C₂₇H₃₆O₄

Average Mass

424.5810 Da

Monoisotopic Mass

424.26136 Da

IUPAC Name

(2S,4'aR,4'bR,8'aR,10'aR)-4'b,6,7,8',8',10'a-hexamethyl-2'-methylidene-3,3',4,4',4'a,4'b,5',6',7',8',8'a,9',10',10'a-tetradecahydro-2'H-spiro[furo[3,2-c]pyran-2,1'-phenanthrene]-4,7'-dione

Traditional Name

(2S,4'aR,4'bR,8'aR,10'aR)-4'b,6,7,8',8',10'a-hexamethyl-2'-methylidene-3',4',4'a,5',6',8'a,9',10'-octahydro-3H-spiro[furo[3,2-c]pyran-2,1'-phenanthrene]-4,7'-dione

CAS Registry Number

Not Available

SMILES

CC1=C(C)C2=C(C[C@]3(O2)C(=C)CC[C@@H]2[C@@]4(C)CCC(=O)C(C)(C)[C@@H]4CC[C@@]32C)C(=O)O1

InChI Identifier

InChI=1S/C27H36O4/c1-15-8-9-20-25(6)12-11-21(28)24(4,5)19(25)10-13-26(20,7)27(15)14-18-22(31-27)16(2)17(3)30-23(18)29/h19-20H,1,8-14H2,2-7H3/t19-,20+,25-,26+,27-/m0/s1

InChI Key

ABBZZTOIFXCLFD-YJHFSHLRSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Lygodium flexuosum	LOTUS Database	35616633

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as diterpene lactones. These are diterpenoids containing a lactone moiety.

Kingdom

Organic compounds

Super Class

Lipids and lipid-like molecules

Class

Prenol lipids

Sub Class

Terpene lactones

Direct Parent

Diterpene lactones

Alternative Parents

Substituents

Diterpene lactone
Diterpenoid
Spongiane diterpenoid
Phenanthrene
Alkyl aryl ether
Pyranone
Pyran
Heteroaromatic compound
Vinylogous ester
Ketone
Cyclic ketone
Lactone
Ether
Oxacycle
Organoheterocyclic compound
Organic oxygen compound
Hydrocarbon derivative
Organic oxide
Carbonyl group
Organooxygen compound
Aromatic heteropolycyclic compound

Molecular Framework

Aromatic heteropolycyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	5.32	ChemAxon
pKa (Strongest Acidic)	19.96	ChemAxon
pKa (Strongest Basic)	-4.9	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	3	ChemAxon
Hydrogen Donor Count	0	ChemAxon
Polar Surface Area	52.6 Å²	ChemAxon
Rotatable Bond Count	0	ChemAxon
Refractivity	122.05 m³·mol⁻¹	ChemAxon
Polarizability	48.42 Å³	ChemAxon
Number of Rings	5	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	No	ChemAxon
Ghose Filter	Yes	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

C00051366

Chemspider ID

Not Available

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

102059585

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

Yadav E, Mani M, Chandra P, Sachan N, Ghosh AK: A review on therapeutic potential of Lygodium flexuosum Linn. Pharmacogn Rev. 2012 Jul;6(12):107-14. doi: 10.4103/0973-7847.99944. [PubMed:23055636 ]
LOTUS database [Link]

Showing NP-Card for (2s,4'ar,4'br,8'ar,10'ar)-4'b,6,7,8',8',10'a-hexamethyl-2'-methylidene-3',4',4'a,5',6',8'a,9',10'-octahydro-3h-spiro[furo[3,2-c]pyran-2,1'-phenanthrene]-4,7'-dione (NP0200527)

MOL for NP0200527 ((2s,4'ar,4'br,8'ar,10'ar)-4'b,6,7,8',8',10'a-hexamethyl-2'-methylidene-3',4',4'a,5',6',8'a,9',10'-octahydro-3h-spiro[furo[3,2-c]pyran-2,1'-phenanthrene]-4,7'-dione)

3D MOL for NP0200527 ((2s,4'ar,4'br,8'ar,10'ar)-4'b,6,7,8',8',10'a-hexamethyl-2'-methylidene-3',4',4'a,5',6',8'a,9',10'-octahydro-3h-spiro[furo[3,2-c]pyran-2,1'-phenanthrene]-4,7'-dione)

3D SDF for NP0200527 ((2s,4'ar,4'br,8'ar,10'ar)-4'b,6,7,8',8',10'a-hexamethyl-2'-methylidene-3',4',4'a,5',6',8'a,9',10'-octahydro-3h-spiro[furo[3,2-c]pyran-2,1'-phenanthrene]-4,7'-dione)

3D-SDF for NP0200527 ((2s,4'ar,4'br,8'ar,10'ar)-4'b,6,7,8',8',10'a-hexamethyl-2'-methylidene-3',4',4'a,5',6',8'a,9',10'-octahydro-3h-spiro[furo[3,2-c]pyran-2,1'-phenanthrene]-4,7'-dione)

PDB for NP0200527 ((2s,4'ar,4'br,8'ar,10'ar)-4'b,6,7,8',8',10'a-hexamethyl-2'-methylidene-3',4',4'a,5',6',8'a,9',10'-octahydro-3h-spiro[furo[3,2-c]pyran-2,1'-phenanthrene]-4,7'-dione)

3D PDB for NP0200527 ((2s,4'ar,4'br,8'ar,10'ar)-4'b,6,7,8',8',10'a-hexamethyl-2'-methylidene-3',4',4'a,5',6',8'a,9',10'-octahydro-3h-spiro[furo[3,2-c]pyran-2,1'-phenanthrene]-4,7'-dione)

SMILES for NP0200527 ((2s,4'ar,4'br,8'ar,10'ar)-4'b,6,7,8',8',10'a-hexamethyl-2'-methylidene-3',4',4'a,5',6',8'a,9',10'-octahydro-3h-spiro[furo[3,2-c]pyran-2,1'-phenanthrene]-4,7'-dione)

INCHI for NP0200527 ((2s,4'ar,4'br,8'ar,10'ar)-4'b,6,7,8',8',10'a-hexamethyl-2'-methylidene-3',4',4'a,5',6',8'a,9',10'-octahydro-3h-spiro[furo[3,2-c]pyran-2,1'-phenanthrene]-4,7'-dione)

Structure for NP0200527 ((2s,4'ar,4'br,8'ar,10'ar)-4'b,6,7,8',8',10'a-hexamethyl-2'-methylidene-3',4',4'a,5',6',8'a,9',10'-octahydro-3h-spiro[furo[3,2-c]pyran-2,1'-phenanthrene]-4,7'-dione)

3D Structure for NP0200527 ((2s,4'ar,4'br,8'ar,10'ar)-4'b,6,7,8',8',10'a-hexamethyl-2'-methylidene-3',4',4'a,5',6',8'a,9',10'-octahydro-3h-spiro[furo[3,2-c]pyran-2,1'-phenanthrene]-4,7'-dione)