NP-MRD: Showing NP-Card for daibulactone a, (rel)- (NP0200387)

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Record Information

Version

2.0

Created at

2022-09-04 19:13:13 UTC

Updated at

2022-09-04 19:13:14 UTC

NP-MRD ID

NP0200387

Secondary Accession Numbers

None

Natural Product Identification

Common Name

daibulactone a, (rel)-

Description

Daibulactone A, (rel)- belongs to the class of organic compounds known as butenolides. These are dihydrofurans with a carbonyl group at the C2 carbon atom. Based on a literature review very few articles have been published on daibulactone A, (rel)-.

Structure

MOL 3D MOL SDF PDB SMILES InChI

     RDKit          3D

 40 42  0  0  0  0  0  0  0  0999 V2000
    5.8396    0.5569    0.6987 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.4140    0.5579    1.1175 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.0049    1.0620    2.1925 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.4566   -0.0180    0.3058 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.0841   -0.0732    0.6026 C   0  0  1  0  0  0  0  0  0  0  0  0
    1.3616    0.5223   -0.5453 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.2564    1.1991   -0.6090 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1275    1.7012   -2.0034 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7115    1.6011    0.4275 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1223    1.2100    0.2129 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.2199    1.9733    0.2705 O   0  0  0  0  0  0  0  0  0  0  0  0
   -4.2933    1.3148    0.0319 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.9258    0.0108   -0.2074 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.8421   -1.1224   -0.5306 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.5699   -0.0862   -0.1011 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5585   -1.0488   -0.2141 C   0  0  1  0  0  0  0  0  0  0  0  0
   -0.6959   -1.0892    1.0493 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.2885   -1.7878    0.5809 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.7413   -1.5604    0.7694 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3671   -2.8110   -0.3019 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.1691   -3.7397   -0.9630 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7671   -2.4634   -0.1940 O   0  0  0  0  0  0  0  0  0  0  0  0
    6.4438    1.2512    1.3167 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.2667   -0.4837    0.6995 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.9209    0.8893   -0.3752 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.8306    0.3983    1.5703 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.8876    0.3263   -1.5097 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.2788    2.7336   -2.1021 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2074    1.7690   -2.1244 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.3047    1.0284   -2.7684 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6799    2.7590    0.3655 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3474    1.4899    1.4708 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.3104    1.6826    0.0140 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.4716   -1.6903   -1.4278 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.8675   -0.7630   -0.7071 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.7950   -1.8252    0.3221 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9799   -0.8735   -1.1241 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0940   -0.6072    1.9449 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.0368   -1.8511    1.7759 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.3679   -2.1430    0.0691 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  2  0
  2  4  1  0
  4  5  1  0
  5 19  1  0
 19 18  1  0
 18 17  2  0
 17 16  1  0
 16 22  1  0
 22 20  1  0
 20 21  2  0
 16 15  1  0
 15 10  2  0
 10  9  1  0
  9  7  1  0
  7  8  1  0
  7  6  2  0
 10 11  1  0
 11 12  1  0
 12 13  2  0
 13 14  1  0
  6  5  1  0
 20 18  1  0
 13 15  1  0
  1 23  1  0
  1 24  1  0
  1 25  1  0
  5 26  1  1
 19 39  1  0
 19 40  1  0
 17 38  1  0
 16 37  1  6
  9 31  1  0
  9 32  1  0
  8 28  1  0
  8 29  1  0
  8 30  1  0
  6 27  1  0
 12 33  1  0
 14 34  1  0
 14 35  1  0
 14 36  1  0
M  END


  Mrv1652309042221132D          

 22 24  0  0  1  0            999 V2000
   -0.8713    4.8201    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4354    4.1197    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8240    3.3920    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.3892    4.1470    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.8251    3.4465    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    1.6496    3.4738    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.0855    2.7734    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.3433    2.4131    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.9101    2.8006    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.3460    2.1002    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.1582    1.9554    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.2715    1.1382    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.5293    0.7779    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.3845   -0.0343    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.9573    1.3725    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.1327    1.3452    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    1.6969    2.0456    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.8723    2.0184    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.4364    2.7188    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.8105    1.1619    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0881    0.7633    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.5382    0.7732    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  2  0  0  0  0
  2  4  1  0  0  0  0
  5  4  1  1  0  0  0
  5  6  1  0  0  0  0
  6  7  2  0  0  0  0
  7  8  1  0  0  0  0
  7  9  1  0  0  0  0
  9 10  1  0  0  0  0
 10 11  1  0  0  0  0
 11 12  1  0  0  0  0
 12 13  2  0  0  0  0
 13 14  1  0  0  0  0
 13 15  1  0  0  0  0
 10 15  2  0  0  0  0
 15 16  1  0  0  0  0
 16 17  1  0  0  0  0
 17 18  2  0  0  0  0
 18 19  1  0  0  0  0
  5 19  1  0  0  0  0
 18 20  1  0  0  0  0
 20 21  2  0  0  0  0
 20 22  1  0  0  0  0
 16 22  1  6  0  0  0
M  END
> <DATABASE_ID>
NP0200387

> <DATABASE_NAME>
NP-MRD

> <SMILES>
CC(=O)O[C@@H]1CC2=C[C@@H](OC2=O)C2=C(C\C(C)=C\1)OC=C2C

> <INCHI_IDENTIFIER>
InChI=1S/C17H18O5/c1-9-4-13(21-11(3)18)6-12-7-15(22-17(12)19)16-10(2)8-20-14(16)5-9/h4,7-8,13,15H,5-6H2,1-3H3/b9-4+/t13-,15+/m0/s1

> <INCHI_KEY>
IAFGRUKVDHTZPP-MXXQPQJVSA-N

> <FORMULA>
C17H18O5

> <MOLECULAR_WEIGHT>
302.326

> <EXACT_MASS>
302.11542368

> <JCHEM_ACCEPTOR_COUNT>
2

> <JCHEM_ATOM_COUNT>
40

> <JCHEM_AVERAGE_POLARIZABILITY>
30.78175328548356

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
0

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
1

> <JCHEM_IUPAC>
(1R,8E,10R)-3,8-dimethyl-13-oxo-5,14-dioxatricyclo[10.2.1.0^{2,6}]pentadeca-2(6),3,8,12(15)-tetraen-10-yl acetate

> <JCHEM_LOGP>
2.6093222786666677

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
3

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA_STRONGEST_ACIDIC>
11.761810393382031

> <JCHEM_PKA_STRONGEST_BASIC>
-2.817607336570317

> <JCHEM_POLAR_SURFACE_AREA>
65.74

> <JCHEM_REFRACTIVITY>
80.58099999999999

> <JCHEM_ROTATABLE_BOND_COUNT>
2

> <JCHEM_RULE_OF_FIVE>
1

> <JCHEM_TRADITIONAL_IUPAC>
(1R,8E,10R)-3,8-dimethyl-13-oxo-5,14-dioxatricyclo[10.2.1.0^{2,6}]pentadeca-2(6),3,8,12(15)-tetraen-10-yl acetate

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 04-SEP-22   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   04-SEP-22         0                                  
HETATM    1  C   UNK     0      -1.626   8.998   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0      -0.813   7.690   0.000  0.00  0.00           C+0
HETATM    3  O   UNK     0      -1.538   6.332   0.000  0.00  0.00           O+0
HETATM    4  O   UNK     0       0.726   7.741   0.000  0.00  0.00           O+0
HETATM    5  C   UNK     0       1.540   6.434   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0       3.079   6.484   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0       3.893   5.177   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0       2.508   4.504   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0       5.432   5.228   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0       6.246   3.920   0.000  0.00  0.00           C+0
HETATM   11  O   UNK     0       7.762   3.650   0.000  0.00  0.00           O+0
HETATM   12  C   UNK     0       7.973   2.125   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0       6.588   1.452   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0       6.318  -0.064   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0       5.520   2.562   0.000  0.00  0.00           C+0
HETATM   16  C   UNK     0       3.981   2.511   0.000  0.00  0.00           C+0
HETATM   17  C   UNK     0       3.167   3.819   0.000  0.00  0.00           C+0
HETATM   18  C   UNK     0       1.628   3.768   0.000  0.00  0.00           C+0
HETATM   19  C   UNK     0       0.815   5.075   0.000  0.00  0.00           C+0
HETATM   20  C   UNK     0       1.513   2.169   0.000  0.00  0.00           C+0
HETATM   21  O   UNK     0       0.165   1.425   0.000  0.00  0.00           O+0
HETATM   22  O   UNK     0       2.871   1.443   0.000  0.00  0.00           O+0
CONECT    1    2                                                            
CONECT    2    1    3    4                                                  
CONECT    3    2                                                            
CONECT    4    2    5                                                       
CONECT    5    4    6   19                                                  
CONECT    6    5    7                                                       
CONECT    7    6    8    9                                                  
CONECT    8    7                                                            
CONECT    9    7   10                                                       
CONECT   10    9   11   15                                                  
CONECT   11   10   12                                                       
CONECT   12   11   13                                                       
CONECT   13   12   14   15                                                  
CONECT   14   13                                                            
CONECT   15   13   10   16                                                  
CONECT   16   15   17   22                                                  
CONECT   17   16   18                                                       
CONECT   18   17   19   20                                                  
CONECT   19   18    5                                                       
CONECT   20   18   21   22                                                  
CONECT   21   20                                                            
CONECT   22   20   16                                                       
MASTER        0    0    0    0    0    0    0    0   22    0   48    0
END

View in JSmol

Synonyms

Not Available

Chemical Formula

C₁₇H₁₈O₅

Average Mass

302.3260 Da

Monoisotopic Mass

302.11542 Da

IUPAC Name

(1R,8E,10R)-3,8-dimethyl-13-oxo-5,14-dioxatricyclo[10.2.1.0^{2,6}]pentadeca-2(6),3,8,12(15)-tetraen-10-yl acetate

Traditional Name

(1R,8E,10R)-3,8-dimethyl-13-oxo-5,14-dioxatricyclo[10.2.1.0^{2,6}]pentadeca-2(6),3,8,12(15)-tetraen-10-yl acetate

CAS Registry Number

Not Available

SMILES

CC(=O)O[C@@H]1CC2=C[C@@H](OC2=O)C2=C(C\C(C)=C\1)OC=C2C

InChI Identifier

InChI=1S/C17H18O5/c1-9-4-13(21-11(3)18)6-12-7-15(22-17(12)19)16-10(2)8-20-14(16)5-9/h4,7-8,13,15H,5-6H2,1-3H3/b9-4+/t13-,15+/m0/s1

InChI Key

IAFGRUKVDHTZPP-MXXQPQJVSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Not Available

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as butenolides. These are dihydrofurans with a carbonyl group at the C2 carbon atom.

Kingdom

Organic compounds

Super Class

Organoheterocyclic compounds

Class

Dihydrofurans

Sub Class

Furanones

Direct Parent

Butenolides

Alternative Parents

Substituents

2-furanone
Dicarboxylic acid or derivatives
Furan
Heteroaromatic compound
Enoate ester
Alpha,beta-unsaturated carboxylic ester
Carboxylic acid ester
Lactone
Carboxylic acid derivative
Oxacycle
Organic oxygen compound
Hydrocarbon derivative
Organic oxide
Carbonyl group
Organooxygen compound
Aromatic heteropolycyclic compound

Molecular Framework

Aromatic heteropolycyclic compounds

External Descriptors

butenolide (CHEBI:69070 )

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	2.61	ChemAxon
pKa (Strongest Acidic)	11.76	ChemAxon
pKa (Strongest Basic)	-2.8	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	2	ChemAxon
Hydrogen Donor Count	0	ChemAxon
Polar Surface Area	65.74 Å²	ChemAxon
Rotatable Bond Count	2	ChemAxon
Refractivity	80.58 m³·mol⁻¹	ChemAxon
Polarizability	30.78 Å³	ChemAxon
Number of Rings	3	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	Yes	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

35518216

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

56925916

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

LOTUS database [Link]

Showing NP-Card for daibulactone a, (rel)- (NP0200387)

MOL for NP0200387 (daibulactone a, (rel)-)

3D MOL for NP0200387 (daibulactone a, (rel)-)

3D SDF for NP0200387 (daibulactone a, (rel)-)

3D-SDF for NP0200387 (daibulactone a, (rel)-)

PDB for NP0200387 (daibulactone a, (rel)-)

3D PDB for NP0200387 (daibulactone a, (rel)-)

SMILES for NP0200387 (daibulactone a, (rel)-)

INCHI for NP0200387 (daibulactone a, (rel)-)

Structure for NP0200387 (daibulactone a, (rel)-)

3D Structure for NP0200387 (daibulactone a, (rel)-)