NP-MRD: Showing NP-Card for (6r,10s)-1,6-dihydroxy-8-(hydroxymethyl)-4,12,12,15-tetramethyl-5-oxotetracyclo[8.5.0.0²,⁶.0¹¹,¹³]pentadeca-3,8-dien-13-yl acetate (NP0200354)

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Record Information

Version

2.0

Created at

2022-09-04 19:10:47 UTC

Updated at

2022-09-04 19:10:48 UTC

NP-MRD ID

NP0200354

Secondary Accession Numbers

None

Natural Product Identification

Common Name

(6r,10s)-1,6-dihydroxy-8-(hydroxymethyl)-4,12,12,15-tetramethyl-5-oxotetracyclo[8.5.0.0²,⁶.0¹¹,¹³]pentadeca-3,8-dien-13-yl acetate

Description

Prostratin belongs to the class of organic compounds known as phorbol esters. These are tigliane diterpenoids which are esters of phorbol. (6r,10s)-1,6-dihydroxy-8-(hydroxymethyl)-4,12,12,15-tetramethyl-5-oxotetracyclo[8.5.0.0²,⁶.0¹¹,¹³]pentadeca-3,8-dien-13-yl acetate is found in Euphorbia caerulescens, Euphorbia cornigera, Euphorbia fischeriana and Homalanthus nutans. (6r,10s)-1,6-dihydroxy-8-(hydroxymethyl)-4,12,12,15-tetramethyl-5-oxotetracyclo[8.5.0.0²,⁶.0¹¹,¹³]pentadeca-3,8-dien-13-yl acetate was first documented in 2022 (PMID: 36027969). Based on a literature review a small amount of articles have been published on Prostratin (PMID: 35891417) (PMID: 35384697) (PMID: 35337136) (PMID: 35522580).

Structure

MOL 3D MOL SDF PDB SMILES InChI


  Mrv1652309042221102D          

 28 31  0  0  1  0            999 V2000
    1.2073    0.9951    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.8095    0.4313    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.5989    0.6709    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.6223   -0.3722    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.2245   -0.9360    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.7884   -0.3338    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.5919   -0.5210    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.1557    0.0812    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.8315   -1.3104    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.3488   -0.6677    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.6539   -1.3758    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.1615   -0.7254    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.9369   -1.0072    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.6206   -0.5456    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.9085   -1.8317    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.5589   -2.3393    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.1156   -2.0595    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    5.6919   -2.6498    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.8689   -2.8468    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.0995   -3.1447    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.0342   -3.9671    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.2893   -4.3217    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.3869   -2.7290    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.2676   -1.9127    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    2.4642   -1.7255    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.6607   -1.5383    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.1515   -2.1874    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.8766   -1.2818    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  2  0  0  0  0
  2  4  1  0  0  0  0
  4  5  1  0  0  0  0
  5  6  1  0  0  0  0
  6  7  1  0  0  0  0
  7  8  1  0  0  0  0
  7  9  1  0  0  0  0
  9 10  1  0  0  0  0
  9 11  1  0  0  0  0
 11 12  1  0  0  0  0
 12 13  2  0  0  0  0
 13 14  1  0  0  0  0
 13 15  1  0  0  0  0
 15 16  2  0  0  0  0
 15 17  1  0  0  0  0
 11 17  1  0  0  0  0
 17 18  1  6  0  0  0
 17 19  1  0  0  0  0
 19 20  1  0  0  0  0
 20 21  1  0  0  0  0
 21 22  1  0  0  0  0
 20 23  2  0  0  0  0
 24 23  1  1  0  0  0
  9 24  1  0  0  0  0
 24 25  1  0  0  0  0
  5 25  1  0  0  0  0
 25 26  1  0  0  0  0
  5 26  1  0  0  0  0
 26 27  1  0  0  0  0
 26 28  1  0  0  0  0
M  END

     RDKit          3D

 58 61  0  0  0  0  0  0  0  0999 V2000
    4.0702   -1.6822    2.8094 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.9610   -1.3181    1.8500 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.7623   -1.5257    2.1598 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.2223   -0.7571    0.6274 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.2621   -0.3865   -0.3402 C   0  0  1  0  0  0  0  0  0  0  0  0
    1.4632   -1.5370   -0.8167 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.2745   -1.2731   -1.6394 C   0  0  1  0  0  0  0  0  0  0  0  0
   -0.4882   -2.5966   -1.6813 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5800   -0.0951   -1.2162 C   0  0  2  0  0  0  0  0  0  0  0  0
   -1.1833    0.2838   -2.4718 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.1786    1.0546   -0.7462 C   0  0  1  0  0  0  0  0  0  0  0  0
   -0.4736    2.0435    0.1334 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5983    2.2197    0.7590 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7889    3.4553    1.5670 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6740    4.2846    1.5313 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7290    1.3238    0.7702 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9015    0.3429   -0.3093 C   0  0  2  0  0  0  0  0  0  0  0  0
   -3.4255    0.8126   -1.4843 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.8149   -0.7226    0.3038 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.9968   -0.9672    0.0491 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8965   -1.3490    1.2564 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.3410   -1.9542    2.5493 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6432   -1.2652    0.7749 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7394   -0.6059   -0.4947 C   0  0  2  0  0  0  0  0  0  0  0  0
    1.5816    0.8626   -0.2367 C   0  0  2  0  0  0  0  0  0  0  0  0
    2.7140    0.7282   -1.2216 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.5235    0.6491   -2.6911 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.0579    1.3934   -0.8559 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.4090   -0.7909    3.3671 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.9143   -2.0465    2.2041 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.7080   -2.5042    3.4295 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.1637   -2.1648    0.0439 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.1501   -2.1915   -1.4133 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.6163   -1.1896   -2.7162 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.2980   -3.3228   -2.0654 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2571   -2.6187   -2.4723 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7679   -2.9907   -0.7138 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6169   -0.5286   -2.8246 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.3992    1.7196   -1.6586 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.2190    2.8998    0.3143 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7231    3.9596    1.3185 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8734    3.1045    2.6363 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6452    4.7814    0.6790 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8454    0.8424    1.7947 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.6564    1.9808    0.7363 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.3964    0.9447   -1.4695 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.3811   -2.3073    2.3981 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.6965   -2.8205    2.8154 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.3835   -1.2084    3.3685 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8316   -1.6704    1.3619 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2207   -1.3723   -1.1995 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.8784    1.4985    0.6558 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.5691    0.9519   -3.1026 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.8448   -0.3917   -2.9996 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.2722    1.2844   -3.2609 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.4388    2.0136   -1.6619 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.7721    0.6349   -0.5123 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.8449    2.0844    0.0114 H   0  0  0  0  0  0  0  0  0  0  0  0
  8  7  1  0
  7  6  1  0
  6  5  1  0
  5  4  1  1
  4  2  1  0
  2  1  1  0
  2  3  2  0
  5 25  1  0
 25 11  1  0
 11 12  1  0
 12 13  2  0
 13 14  1  0
 14 15  1  0
 13 16  1  0
 16 17  1  0
 17 18  1  6
 17 24  1  0
 24 23  1  0
 23 21  2  0
 21 22  1  0
 21 19  1  0
 19 20  2  0
 24  9  1  0
  9 10  1  6
 25 26  1  0
 26 27  1  0
 26 28  1  0
  9  7  1  0
 26  5  1  0
  9 11  1  0
 19 17  1  0
  8 35  1  0
  8 36  1  0
  8 37  1  0
  7 34  1  6
  6 32  1  0
  6 33  1  0
  1 29  1  0
  1 30  1  0
  1 31  1  0
 25 52  1  1
 11 39  1  6
 12 40  1  0
 14 41  1  0
 14 42  1  0
 15 43  1  0
 16 44  1  0
 16 45  1  0
 18 46  1  0
 24 51  1  6
 23 50  1  0
 22 47  1  0
 22 48  1  0
 22 49  1  0
 10 38  1  0
 27 53  1  0
 27 54  1  0
 27 55  1  0
 28 56  1  0
 28 57  1  0
 28 58  1  0
M  END


  Mrv1652309042221102D          

 28 31  0  0  1  0            999 V2000
    1.2073    0.9951    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.8095    0.4313    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.5989    0.6709    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.6223   -0.3722    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.2245   -0.9360    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.7884   -0.3338    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.5919   -0.5210    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.1557    0.0812    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.8315   -1.3104    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.3488   -0.6677    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.6539   -1.3758    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.1615   -0.7254    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.9369   -1.0072    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.6206   -0.5456    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.9085   -1.8317    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.5589   -2.3393    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.1156   -2.0595    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    5.6919   -2.6498    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.8689   -2.8468    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.0995   -3.1447    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.0342   -3.9671    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.2893   -4.3217    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.3869   -2.7290    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.2676   -1.9127    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    2.4642   -1.7255    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.6607   -1.5383    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.1515   -2.1874    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.8766   -1.2818    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  2  0  0  0  0
  2  4  1  0  0  0  0
  4  5  1  0  0  0  0
  5  6  1  0  0  0  0
  6  7  1  0  0  0  0
  7  8  1  0  0  0  0
  7  9  1  0  0  0  0
  9 10  1  0  0  0  0
  9 11  1  0  0  0  0
 11 12  1  0  0  0  0
 12 13  2  0  0  0  0
 13 14  1  0  0  0  0
 13 15  1  0  0  0  0
 15 16  2  0  0  0  0
 15 17  1  0  0  0  0
 11 17  1  0  0  0  0
 17 18  1  6  0  0  0
 17 19  1  0  0  0  0
 19 20  1  0  0  0  0
 20 21  1  0  0  0  0
 21 22  1  0  0  0  0
 20 23  2  0  0  0  0
 24 23  1  1  0  0  0
  9 24  1  0  0  0  0
 24 25  1  0  0  0  0
  5 25  1  0  0  0  0
 25 26  1  0  0  0  0
  5 26  1  0  0  0  0
 26 27  1  0  0  0  0
 26 28  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0200354

> <DATABASE_NAME>
NP-MRD

> <SMILES>
CC1CC2(OC(C)=O)C([C@@H]3C=C(CO)C[C@@]4(O)C(C=C(C)C4=O)C13O)C2(C)C

> <INCHI_IDENTIFIER>
InChI=1S/C22H30O6/c1-11-6-16-20(26,18(11)25)9-14(10-23)7-15-17-19(4,5)21(17,28-13(3)24)8-12(2)22(15,16)27/h6-7,12,15-17,23,26-27H,8-10H2,1-5H3/t12?,15-,16?,17?,20+,21?,22?/m0/s1

> <INCHI_KEY>
BOJKFRKNLSCGHY-UMJKPZNRSA-N

> <FORMULA>
C22H30O6

> <MOLECULAR_WEIGHT>
390.476

> <EXACT_MASS>
390.204238686

> <JCHEM_ACCEPTOR_COUNT>
5

> <JCHEM_ATOM_COUNT>
58

> <JCHEM_AVERAGE_POLARIZABILITY>
41.98612373329351

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
3

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
1

> <JCHEM_IUPAC>
(6R,10S)-1,6-dihydroxy-8-(hydroxymethyl)-4,12,12,15-tetramethyl-5-oxotetracyclo[8.5.0.0^{2,6}.0^{11,13}]pentadeca-3,8-dien-13-yl acetate

> <JCHEM_LOGP>
0.6935895459999998

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
4

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA>
14.007139471640308

> <JCHEM_PKA_STRONGEST_ACIDIC>
12.57463336337494

> <JCHEM_PKA_STRONGEST_BASIC>
-2.731613008552581

> <JCHEM_POLAR_SURFACE_AREA>
104.06

> <JCHEM_REFRACTIVITY>
103.6662

> <JCHEM_ROTATABLE_BOND_COUNT>
3

> <JCHEM_RULE_OF_FIVE>
1

> <JCHEM_TRADITIONAL_IUPAC>
(6R,10S)-1,6-dihydroxy-8-(hydroxymethyl)-4,12,12,15-tetramethyl-5-oxotetracyclo[8.5.0.0^{2,6}.0^{11,13}]pentadeca-3,8-dien-13-yl acetate

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 04-SEP-22   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   04-SEP-22         0                                  
HETATM    1  C   UNK     0       2.254   1.858   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0       3.378   0.805   0.000  0.00  0.00           C+0
HETATM    3  O   UNK     0       4.851   1.252   0.000  0.00  0.00           O+0
HETATM    4  O   UNK     0       3.028  -0.695   0.000  0.00  0.00           O+0
HETATM    5  C   UNK     0       4.152  -1.747   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0       5.205  -0.623   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0       6.705  -0.973   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0       7.757   0.152   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0       7.152  -2.446   0.000  0.00  0.00           C+0
HETATM   10  O   UNK     0       8.118  -1.246   0.000  0.00  0.00           O+0
HETATM   11  C   UNK     0       8.687  -2.568   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0       9.635  -1.354   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0      11.082  -1.880   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0      12.358  -1.018   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0      11.029  -3.419   0.000  0.00  0.00           C+0
HETATM   16  O   UNK     0      12.243  -4.367   0.000  0.00  0.00           O+0
HETATM   17  C   UNK     0       9.549  -3.844   0.000  0.00  0.00           C+0
HETATM   18  O   UNK     0      10.625  -4.946   0.000  0.00  0.00           O+0
HETATM   19  C   UNK     0       9.089  -5.314   0.000  0.00  0.00           C+0
HETATM   20  C   UNK     0       7.652  -5.870   0.000  0.00  0.00           C+0
HETATM   21  C   UNK     0       7.530  -7.405   0.000  0.00  0.00           C+0
HETATM   22  O   UNK     0       6.140  -8.067   0.000  0.00  0.00           O+0
HETATM   23  C   UNK     0       6.322  -5.094   0.000  0.00  0.00           C+0
HETATM   24  C   UNK     0       6.100  -3.570   0.000  0.00  0.00           C+0
HETATM   25  C   UNK     0       4.600  -3.221   0.000  0.00  0.00           C+0
HETATM   26  C   UNK     0       3.100  -2.871   0.000  0.00  0.00           C+0
HETATM   27  C   UNK     0       2.149  -4.083   0.000  0.00  0.00           C+0
HETATM   28  C   UNK     0       1.636  -2.393   0.000  0.00  0.00           C+0
CONECT    1    2                                                            
CONECT    2    1    3    4                                                  
CONECT    3    2                                                            
CONECT    4    2    5                                                       
CONECT    5    4    6   25   26                                             
CONECT    6    5    7                                                       
CONECT    7    6    8    9                                                  
CONECT    8    7                                                            
CONECT    9    7   10   11   24                                             
CONECT   10    9                                                            
CONECT   11    9   12   17                                                  
CONECT   12   11   13                                                       
CONECT   13   12   14   15                                                  
CONECT   14   13                                                            
CONECT   15   13   16   17                                                  
CONECT   16   15                                                            
CONECT   17   15   11   18   19                                             
CONECT   18   17                                                            
CONECT   19   17   20                                                       
CONECT   20   19   21   23                                                  
CONECT   21   20   22                                                       
CONECT   22   21                                                            
CONECT   23   20   24                                                       
CONECT   24   23    9   25                                                  
CONECT   25   24    5   26                                                  
CONECT   26   25    5   27   28                                             
CONECT   27   26                                                            
CONECT   28   26                                                            
MASTER        0    0    0    0    0    0    0    0   28    0   62    0
END

View in JSmol

Synonyms

Value	Source
12-Deoxyphorbol 13-acetate	MeSH

Chemical Formula

C₂₂H₃₀O₆

Average Mass

390.4760 Da

Monoisotopic Mass

390.20424 Da

IUPAC Name

(6R,10S)-1,6-dihydroxy-8-(hydroxymethyl)-4,12,12,15-tetramethyl-5-oxotetracyclo[8.5.0.0^{2,6}.0^{11,13}]pentadeca-3,8-dien-13-yl acetate

Traditional Name

(6R,10S)-1,6-dihydroxy-8-(hydroxymethyl)-4,12,12,15-tetramethyl-5-oxotetracyclo[8.5.0.0^{2,6}.0^{11,13}]pentadeca-3,8-dien-13-yl acetate

CAS Registry Number

Not Available

SMILES

CC1CC2(OC(C)=O)C([C@@H]3C=C(CO)C[C@@]4(O)C(C=C(C)C4=O)C13O)C2(C)C

InChI Identifier

InChI=1S/C22H30O6/c1-11-6-16-20(26,18(11)25)9-14(10-23)7-15-17-19(4,5)21(17,28-13(3)24)8-12(2)22(15,16)27/h6-7,12,15-17,23,26-27H,8-10H2,1-5H3/t12?,15-,16?,17?,20+,21?,22?/m0/s1

InChI Key

BOJKFRKNLSCGHY-UMJKPZNRSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Euphorbia caerulescens	LOTUS Database	35616633
Euphorbia cornigera	LOTUS Database	35616633
Euphorbia fischeriana	LOTUS Database	35616633
Homalanthus nutans	LOTUS Database	35616633

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as phorbol esters. These are tigliane diterpenoids which are esters of phorbol.

Kingdom

Organic compounds

Super Class

Lipids and lipid-like molecules

Class

Prenol lipids

Sub Class

Diterpenoids

Direct Parent

Phorbol esters

Alternative Parents

Substituents

Phorbol ester
Tertiary alcohol
Cyclic alcohol
Ketone
Carboxylic acid ester
Monocarboxylic acid or derivatives
Carboxylic acid derivative
Organic oxygen compound
Organic oxide
Hydrocarbon derivative
Primary alcohol
Organooxygen compound
Carbonyl group
Alcohol
Aliphatic homopolycyclic compound

Molecular Framework

Aliphatic homopolycyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	0.69	ChemAxon
pKa (Strongest Acidic)	12.57	ChemAxon
pKa (Strongest Basic)	-2.7	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	5	ChemAxon
Hydrogen Donor Count	3	ChemAxon
Polar Surface Area	104.06 Å²	ChemAxon
Rotatable Bond Count	3	ChemAxon
Refractivity	103.67 m³·mol⁻¹	ChemAxon
Polarizability	41.99 Å³	ChemAxon
Number of Rings	4	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	Yes	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

C00040076

Chemspider ID

320320

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Prostratin

METLIN ID

Not Available

PubChem Compound

360836

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

Li SF, Wang XY, Li GL, Jiao YY, Wang WH, Wu XK, Zhang LW: Potential HIV latency-reversing agents with STAT1-activating activity from the leaves of Wikstroemia chamaedaphne. Phytochemistry. 2022 Nov;203:113395. doi: 10.1016/j.phytochem.2022.113395. Epub 2022 Aug 24. [PubMed:36027969 ]
Tembeni B, Sciorillo A, Invernizzi L, Klimkait T, Urda L, Moyo P, Naidoo-Maharaj D, Levitties N, Gyampoh K, Zu G, Yuan Z, Mounzer K, Nkabinde S, Nkabinde M, Gqaleni N, Tietjen I, Montaner LJ, Maharaj V: HPLC-Based Purification and Isolation of Potent Anti-HIV and Latency Reversing Daphnane Diterpenes from the Medicinal Plant Gnidia sericocephala (Thymelaeaceae). Viruses. 2022 Jun 30;14(7):1437. doi: 10.3390/v14071437. [PubMed:35891417 ]
Atindaana E, Kissi-Twum A, Emery S, Burnett C, Pitcher J, Visser M, Kidd JM, Telesnitsky A: Bimodal Expression Patterns, and Not Viral Burst Sizes, Predict the Effects of Vpr on HIV-1 Proviral Populations in Jurkat Cells. mBio. 2022 Apr 26;13(2):e0374821. doi: 10.1128/mbio.03748-21. Epub 2022 Apr 6. [PubMed:35384697 ]
Huang XS, Tian RR, Ma MD, Luo RH, Yang LM, Peng GH, Zhang M, Dong XQ, Zheng YT: Bromodomain and Extra-Terminal Inhibitor BMS-986158 Reverses Latent HIV-1 Infection In Vitro and Ex Vivo by Increasing CDK9 Phosphorylation and Recruitment. Pharmaceuticals (Basel). 2022 Mar 10;15(3):338. doi: 10.3390/ph15030338. [PubMed:35337136 ]
Wang M, Sciorillo A, Read S, Divsalar DN, Gyampoh K, Zu G, Yuan Z, Mounzer K, Williams DE, Montaner LJ, de Voogd N, Tietjen I, Andersen RJ: Ansellone J, a Potent in Vitro and ex Vivo HIV-1 Latency Reversal Agent Isolated from a Phorbas sp. Marine Sponge. J Nat Prod. 2022 May 27;85(5):1274-1281. doi: 10.1021/acs.jnatprod.1c01225. Epub 2022 May 6. [PubMed:35522580 ]
LOTUS database [Link]

Showing NP-Card for (6r,10s)-1,6-dihydroxy-8-(hydroxymethyl)-4,12,12,15-tetramethyl-5-oxotetracyclo[8.5.0.0²,⁶.0¹¹,¹³]pentadeca-3,8-dien-13-yl acetate (NP0200354)

MOL for NP0200354 ((6r,10s)-1,6-dihydroxy-8-(hydroxymethyl)-4,12,12,15-tetramethyl-5-oxotetracyclo[8.5.0.0²,⁶.0¹¹,¹³]pentadeca-3,8-dien-13-yl acetate)

3D MOL for NP0200354 ((6r,10s)-1,6-dihydroxy-8-(hydroxymethyl)-4,12,12,15-tetramethyl-5-oxotetracyclo[8.5.0.0²,⁶.0¹¹,¹³]pentadeca-3,8-dien-13-yl acetate)

3D SDF for NP0200354 ((6r,10s)-1,6-dihydroxy-8-(hydroxymethyl)-4,12,12,15-tetramethyl-5-oxotetracyclo[8.5.0.0²,⁶.0¹¹,¹³]pentadeca-3,8-dien-13-yl acetate)

3D-SDF for NP0200354 ((6r,10s)-1,6-dihydroxy-8-(hydroxymethyl)-4,12,12,15-tetramethyl-5-oxotetracyclo[8.5.0.0²,⁶.0¹¹,¹³]pentadeca-3,8-dien-13-yl acetate)

PDB for NP0200354 ((6r,10s)-1,6-dihydroxy-8-(hydroxymethyl)-4,12,12,15-tetramethyl-5-oxotetracyclo[8.5.0.0²,⁶.0¹¹,¹³]pentadeca-3,8-dien-13-yl acetate)

3D PDB for NP0200354 ((6r,10s)-1,6-dihydroxy-8-(hydroxymethyl)-4,12,12,15-tetramethyl-5-oxotetracyclo[8.5.0.0²,⁶.0¹¹,¹³]pentadeca-3,8-dien-13-yl acetate)

SMILES for NP0200354 ((6r,10s)-1,6-dihydroxy-8-(hydroxymethyl)-4,12,12,15-tetramethyl-5-oxotetracyclo[8.5.0.0²,⁶.0¹¹,¹³]pentadeca-3,8-dien-13-yl acetate)

INCHI for NP0200354 ((6r,10s)-1,6-dihydroxy-8-(hydroxymethyl)-4,12,12,15-tetramethyl-5-oxotetracyclo[8.5.0.0²,⁶.0¹¹,¹³]pentadeca-3,8-dien-13-yl acetate)

Structure for NP0200354 ((6r,10s)-1,6-dihydroxy-8-(hydroxymethyl)-4,12,12,15-tetramethyl-5-oxotetracyclo[8.5.0.0²,⁶.0¹¹,¹³]pentadeca-3,8-dien-13-yl acetate)

3D Structure for NP0200354 ((6r,10s)-1,6-dihydroxy-8-(hydroxymethyl)-4,12,12,15-tetramethyl-5-oxotetracyclo[8.5.0.0²,⁶.0¹¹,¹³]pentadeca-3,8-dien-13-yl acetate)