NP-MRD: Showing NP-Card for (2s,5s,6s)-2,6,12-trihydroxy-10-[(2s,3r)-3-hydroxybutan-2-yl]-5-[(1r)-1-hydroxyethyl]-4,11-dimethyl-7-oxa-4-azatricyclo[6.4.0.0²,⁶]dodeca-1(12),8,10-trien-3-one (NP0200074)

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Record Information

Version

2.0

Created at

2022-09-04 18:50:35 UTC

Updated at

2022-09-04 18:50:35 UTC

NP-MRD ID

NP0200074

Secondary Accession Numbers

None

Natural Product Identification

Common Name

(2s,5s,6s)-2,6,12-trihydroxy-10-[(2s,3r)-3-hydroxybutan-2-yl]-5-[(1r)-1-hydroxyethyl]-4,11-dimethyl-7-oxa-4-azatricyclo[6.4.0.0²,⁶]dodeca-1(12),8,10-trien-3-one

Description

Nigrospine belongs to the class of organic compounds known as coumarans. Coumarans are compounds containing the coumaran skeleton, which consists of a benzene ring fused to a 2,3-dihydrofuran ring. (2s,5s,6s)-2,6,12-trihydroxy-10-[(2s,3r)-3-hydroxybutan-2-yl]-5-[(1r)-1-hydroxyethyl]-4,11-dimethyl-7-oxa-4-azatricyclo[6.4.0.0²,⁶]dodeca-1(12),8,10-trien-3-one is found in Nigrospora oryzae. Based on a literature review very few articles have been published on Nigrospine.

Structure

MOL 3D MOL SDF PDB SMILES InChI


  Mrv1652309042220502D          

 26 28  0  0  1  0            999 V2000
    5.8208    3.1890    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.2568    2.5869    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.4962    1.7974    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.2997    1.6100    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    6.5391    0.8205    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.8637    2.2121    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    7.6671    2.0247    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.6242    3.0016    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.9322    1.1953    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.1288    1.3827    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.8894    2.1722    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.4534    2.7743    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.2139    3.5638    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.0645    2.1885    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    3.3349    2.9679    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.4068    2.6864    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.4230    3.5113    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.7299    2.2148    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    0.9505    2.4851    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.9693    1.4253    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    1.4713    0.7675    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    1.7920    0.0074    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.6527    0.8699    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.7942    1.4090    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    2.5238    0.6296    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.4519    0.9110    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  2  0  0  0  0
  3  4  1  0  0  0  0
  4  5  1  1  0  0  0
  4  6  1  0  0  0  0
  6  7  1  0  0  0  0
  6  8  1  6  0  0  0
  3  9  1  0  0  0  0
  9 10  2  0  0  0  0
 10 11  1  0  0  0  0
 11 12  2  0  0  0  0
  2 12  1  0  0  0  0
 12 13  1  0  0  0  0
 11 14  1  0  0  0  0
 14 15  1  1  0  0  0
 14 16  1  0  0  0  0
 16 17  2  0  0  0  0
 16 18  1  0  0  0  0
 18 19  1  0  0  0  0
 18 20  1  0  0  0  0
 20 21  1  6  0  0  0
 21 22  1  0  0  0  0
 21 23  1  1  0  0  0
 20 24  1  0  0  0  0
 14 24  1  0  0  0  0
 24 25  1  6  0  0  0
 24 26  1  0  0  0  0
 10 26  1  0  0  0  0
M  END

     RDKit          3D

 51 53  0  0  0  0  0  0  0  0999 V2000
    2.9455   -2.4212   -0.5542 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.9661   -1.3316   -0.5244 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.3547   -0.0417   -0.2585 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.7925    0.3066   -0.4254 C   0  0  2  0  0  0  0  0  0  0  0  0
    4.4968   -0.1796   -1.6165 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.5379    0.6483    0.8185 C   0  0  1  0  0  0  0  0  0  0  0  0
    5.5680    1.7161    0.5839 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.6926    1.1976    1.8225 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.3428    0.9035   -0.0774 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0174    0.5601   -0.1756 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3736   -0.7562   -0.4546 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.6325   -1.6545   -0.6167 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.2865   -2.9982   -0.8948 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7724   -0.7982   -0.5260 C   0  0  1  0  0  0  0  0  0  0  0  0
   -2.3410   -0.5373   -1.7787 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.6145   -1.7228    0.2298 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3714   -2.8013    0.7309 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.8579   -1.0104    0.2425 N   0  0  0  0  0  0  0  0  0  0  0  0
   -5.1821   -1.5641    0.3785 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5459    0.4276    0.0638 C   0  0  1  0  0  0  0  0  0  0  0  0
   -4.4780    1.2778    0.8388 C   0  0  1  0  0  0  0  0  0  0  0  0
   -4.1543    2.7420    0.5525 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.7754    1.0522    0.3961 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1290    0.4233    0.3889 C   0  0  1  0  0  0  0  0  0  0  0  0
   -1.9365   -0.0605    1.6877 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2085    1.3045   -0.0445 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.9324   -2.9532   -1.5093 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.5501   -3.2288    0.1777 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.9767   -2.1883   -0.2918 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.6212    1.4637   -0.7943 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.3832    0.6412   -2.4485 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.1178   -1.0464   -2.1716 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.5988   -0.1571   -1.4611 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.9711   -0.2618    1.3214 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.2598    1.4239   -0.2476 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.1670    2.7289    0.5010 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.2797    1.7050    1.4895 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.2637    1.5973    2.5541 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.6353    1.9101    0.1395 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.9761   -3.7001   -1.0176 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9384    0.2779   -2.1286 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.8374   -1.2530   -0.4708 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.5904   -1.2813    1.3531 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.1554   -2.6874    0.3475 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.7149    0.6381   -1.0241 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.4533    1.1006    1.9441 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.9253    2.8172   -0.5239 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.0824    3.3369    0.7208 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.3292    3.0922    1.1824 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.4384    0.9728    1.1158 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1257    0.3695    2.1022 H   0  0  0  0  0  0  0  0  0  0  0  0
  7  6  1  0
  6  8  1  0
  6  4  1  0
  4  5  1  0
  4  3  1  0
  3  2  2  0
  2  1  1  0
  2 12  1  0
 12 13  1  0
 12 11  2  0
 11 10  1  0
 10 26  1  0
 26 24  1  0
 24 25  1  1
 24 20  1  0
 20 21  1  0
 21 22  1  0
 21 23  1  0
 20 18  1  0
 18 19  1  0
 18 16  1  0
 16 17  2  0
 16 14  1  0
 14 15  1  6
 10  9  2  0
  9  3  1  0
 14 11  1  0
 14 24  1  0
  7 35  1  0
  7 36  1  0
  7 37  1  0
  6 34  1  1
  8 38  1  0
  4 30  1  6
  5 31  1  0
  5 32  1  0
  5 33  1  0
  1 27  1  0
  1 28  1  0
  1 29  1  0
 13 40  1  0
 25 51  1  0
 20 45  1  6
 21 46  1  1
 22 47  1  0
 22 48  1  0
 22 49  1  0
 23 50  1  0
 19 42  1  0
 19 43  1  0
 19 44  1  0
 15 41  1  0
  9 39  1  0
M  END


  Mrv1652309042220502D          

 26 28  0  0  1  0            999 V2000
    5.8208    3.1890    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.2568    2.5869    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.4962    1.7974    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.2997    1.6100    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    6.5391    0.8205    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.8637    2.2121    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    7.6671    2.0247    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.6242    3.0016    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.9322    1.1953    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.1288    1.3827    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.8894    2.1722    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.4534    2.7743    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.2139    3.5638    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.0645    2.1885    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    3.3349    2.9679    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.4068    2.6864    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.4230    3.5113    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.7299    2.2148    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    0.9505    2.4851    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.9693    1.4253    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    1.4713    0.7675    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    1.7920    0.0074    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.6527    0.8699    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.7942    1.4090    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    2.5238    0.6296    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.4519    0.9110    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  2  0  0  0  0
  3  4  1  0  0  0  0
  4  5  1  1  0  0  0
  4  6  1  0  0  0  0
  6  7  1  0  0  0  0
  6  8  1  6  0  0  0
  3  9  1  0  0  0  0
  9 10  2  0  0  0  0
 10 11  1  0  0  0  0
 11 12  2  0  0  0  0
  2 12  1  0  0  0  0
 12 13  1  0  0  0  0
 11 14  1  0  0  0  0
 14 15  1  1  0  0  0
 14 16  1  0  0  0  0
 16 17  2  0  0  0  0
 16 18  1  0  0  0  0
 18 19  1  0  0  0  0
 18 20  1  0  0  0  0
 20 21  1  6  0  0  0
 21 22  1  0  0  0  0
 21 23  1  1  0  0  0
 20 24  1  0  0  0  0
 14 24  1  0  0  0  0
 24 25  1  6  0  0  0
 24 26  1  0  0  0  0
 10 26  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0200074

> <DATABASE_NAME>
NP-MRD

> <SMILES>
C[C@@H](O)[C@@H](C)C1=C(C)C(O)=C2C(O[C@@]3(O)[C@H]([C@@H](C)O)N(C)C(=O)[C@]23O)=C1

> <INCHI_IDENTIFIER>
InChI=1S/C18H25NO7/c1-7(9(3)20)11-6-12-13(14(22)8(11)2)17(24)16(23)19(5)15(10(4)21)18(17,25)26-12/h6-7,9-10,15,20-22,24-25H,1-5H3/t7-,9-,10-,15+,17-,18+/m1/s1

> <INCHI_KEY>
JELWCSRCEBMYQY-NFCVBWQWSA-N

> <FORMULA>
C18H25NO7

> <MOLECULAR_WEIGHT>
367.398

> <EXACT_MASS>
367.163102149

> <JCHEM_ACCEPTOR_COUNT>
7

> <JCHEM_ATOM_COUNT>
51

> <JCHEM_AVERAGE_POLARIZABILITY>
38.206184138262

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
5

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
1

> <JCHEM_IUPAC>
(2S,5S,6S)-2,6,12-trihydroxy-10-[(2S,3R)-3-hydroxybutan-2-yl]-5-[(1R)-1-hydroxyethyl]-4,11-dimethyl-7-oxa-4-azatricyclo[6.4.0.0^{2,6}]dodeca-1(8),9,11-trien-3-one

> <JCHEM_LOGP>
0.28052040866666667

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
3

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA>
10.204188187334903

> <JCHEM_PKA_STRONGEST_ACIDIC>
9.45094198470002

> <JCHEM_PKA_STRONGEST_BASIC>
-2.7344696056177815

> <JCHEM_POLAR_SURFACE_AREA>
130.69

> <JCHEM_REFRACTIVITY>
91.8115

> <JCHEM_ROTATABLE_BOND_COUNT>
3

> <JCHEM_RULE_OF_FIVE>
1

> <JCHEM_TRADITIONAL_IUPAC>
(2S,5S,6S)-2,6,12-trihydroxy-10-[(2S,3R)-3-hydroxybutan-2-yl]-5-[(1R)-1-hydroxyethyl]-4,11-dimethyl-7-oxa-4-azatricyclo[6.4.0.0^{2,6}]dodeca-1(8),9,11-trien-3-one

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 04-SEP-22   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   04-SEP-22         0                                  
HETATM    1  C   UNK     0      10.866   5.953   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0       9.813   4.829   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0      10.260   3.355   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0      11.759   3.005   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0      12.206   1.532   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0      12.812   4.129   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0      14.312   3.779   0.000  0.00  0.00           C+0
HETATM    8  O   UNK     0      12.365   5.603   0.000  0.00  0.00           O+0
HETATM    9  C   UNK     0       9.207   2.231   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0       7.707   2.581   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0       7.260   4.055   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0       8.313   5.179   0.000  0.00  0.00           C+0
HETATM   13  O   UNK     0       7.866   6.652   0.000  0.00  0.00           O+0
HETATM   14  C   UNK     0       5.720   4.085   0.000  0.00  0.00           C+0
HETATM   15  O   UNK     0       6.225   5.540   0.000  0.00  0.00           O+0
HETATM   16  C   UNK     0       4.493   5.015   0.000  0.00  0.00           C+0
HETATM   17  O   UNK     0       4.523   6.554   0.000  0.00  0.00           O+0
HETATM   18  N   UNK     0       3.229   4.134   0.000  0.00  0.00           N+0
HETATM   19  C   UNK     0       1.774   4.639   0.000  0.00  0.00           C+0
HETATM   20  C   UNK     0       3.676   2.661   0.000  0.00  0.00           C+0
HETATM   21  C   UNK     0       2.746   1.433   0.000  0.00  0.00           C+0
HETATM   22  C   UNK     0       3.345   0.014   0.000  0.00  0.00           C+0
HETATM   23  O   UNK     0       1.218   1.624   0.000  0.00  0.00           O+0
HETATM   24  C   UNK     0       5.216   2.630   0.000  0.00  0.00           C+0
HETATM   25  O   UNK     0       4.711   1.175   0.000  0.00  0.00           O+0
HETATM   26  O   UNK     0       6.444   1.701   0.000  0.00  0.00           O+0
CONECT    1    2                                                            
CONECT    2    1    3   12                                                  
CONECT    3    2    4    9                                                  
CONECT    4    3    5    6                                                  
CONECT    5    4                                                            
CONECT    6    4    7    8                                                  
CONECT    7    6                                                            
CONECT    8    6                                                            
CONECT    9    3   10                                                       
CONECT   10    9   11   26                                                  
CONECT   11   10   12   14                                                  
CONECT   12   11    2   13                                                  
CONECT   13   12                                                            
CONECT   14   11   15   16   24                                             
CONECT   15   14                                                            
CONECT   16   14   17   18                                                  
CONECT   17   16                                                            
CONECT   18   16   19   20                                                  
CONECT   19   18                                                            
CONECT   20   18   21   24                                                  
CONECT   21   20   22   23                                                  
CONECT   22   21                                                            
CONECT   23   21                                                            
CONECT   24   20   14   25   26                                             
CONECT   25   24                                                            
CONECT   26   24   10                                                       
MASTER        0    0    0    0    0    0    0    0   26    0   56    0
END

View in JSmol

Synonyms

Not Available

Chemical Formula

C₁₈H₂₅NO₇

Average Mass

367.3980 Da

Monoisotopic Mass

367.16310 Da

IUPAC Name

(2S,5S,6S)-2,6,12-trihydroxy-10-[(2S,3R)-3-hydroxybutan-2-yl]-5-[(1R)-1-hydroxyethyl]-4,11-dimethyl-7-oxa-4-azatricyclo[6.4.0.0^{2,6}]dodeca-1(8),9,11-trien-3-one

Traditional Name

(2S,5S,6S)-2,6,12-trihydroxy-10-[(2S,3R)-3-hydroxybutan-2-yl]-5-[(1R)-1-hydroxyethyl]-4,11-dimethyl-7-oxa-4-azatricyclo[6.4.0.0^{2,6}]dodeca-1(8),9,11-trien-3-one

CAS Registry Number

Not Available

SMILES

C[C@@H](O)[C@@H](C)C1=C(C)C(O)=C2C(O[C@@]3(O)[C@H]([C@@H](C)O)N(C)C(=O)[C@]23O)=C1

InChI Identifier

InChI=1S/C18H25NO7/c1-7(9(3)20)11-6-12-13(14(22)8(11)2)17(24)16(23)19(5)15(10(4)21)18(17,25)26-12/h6-7,9-10,15,20-22,24-25H,1-5H3/t7-,9-,10-,15+,17-,18+/m1/s1

InChI Key

JELWCSRCEBMYQY-NFCVBWQWSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Nigrospora oryzae	LOTUS Database	35616633

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as coumarans. Coumarans are compounds containing the coumaran skeleton, which consists of a benzene ring fused to a 2,3-dihydrofuran ring.

Kingdom

Organic compounds

Super Class

Organoheterocyclic compounds

Class

Coumarans

Sub Class

Not Available

Direct Parent

Coumarans

Alternative Parents

Substituents

Coumaran
Furopyrrole
1-hydroxy-4-unsubstituted benzenoid
Benzenoid
N-alkylpyrrolidine
2-pyrrolidone
Pyrrolidone
Tertiary carboxylic acid amide
Tertiary alcohol
Pyrrolidine
Pyrrole
Furan
Secondary alcohol
Lactam
Hemiacetal
Carboxamide group
Oxacycle
Azacycle
Polyol
Carboxylic acid derivative
Organic nitrogen compound
Organic oxygen compound
Organopnictogen compound
Organic oxide
Hydrocarbon derivative
Organooxygen compound
Organonitrogen compound
Carbonyl group
Alcohol
Aromatic heteropolycyclic compound

Molecular Framework

Aromatic heteropolycyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	0.28	ChemAxon
pKa (Strongest Acidic)	9.45	ChemAxon
pKa (Strongest Basic)	-2.7	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	7	ChemAxon
Hydrogen Donor Count	5	ChemAxon
Polar Surface Area	130.69 Å²	ChemAxon
Rotatable Bond Count	3	ChemAxon
Refractivity	91.81 m³·mol⁻¹	ChemAxon
Polarizability	38.21 Å³	ChemAxon
Number of Rings	3	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	Yes	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

30974154

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

139588196

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

LOTUS database [Link]

Showing NP-Card for (2s,5s,6s)-2,6,12-trihydroxy-10-[(2s,3r)-3-hydroxybutan-2-yl]-5-[(1r)-1-hydroxyethyl]-4,11-dimethyl-7-oxa-4-azatricyclo[6.4.0.0²,⁶]dodeca-1(12),8,10-trien-3-one (NP0200074)

MOL for NP0200074 ((2s,5s,6s)-2,6,12-trihydroxy-10-[(2s,3r)-3-hydroxybutan-2-yl]-5-[(1r)-1-hydroxyethyl]-4,11-dimethyl-7-oxa-4-azatricyclo[6.4.0.0²,⁶]dodeca-1(12),8,10-trien-3-one)

3D MOL for NP0200074 ((2s,5s,6s)-2,6,12-trihydroxy-10-[(2s,3r)-3-hydroxybutan-2-yl]-5-[(1r)-1-hydroxyethyl]-4,11-dimethyl-7-oxa-4-azatricyclo[6.4.0.0²,⁶]dodeca-1(12),8,10-trien-3-one)

3D SDF for NP0200074 ((2s,5s,6s)-2,6,12-trihydroxy-10-[(2s,3r)-3-hydroxybutan-2-yl]-5-[(1r)-1-hydroxyethyl]-4,11-dimethyl-7-oxa-4-azatricyclo[6.4.0.0²,⁶]dodeca-1(12),8,10-trien-3-one)

3D-SDF for NP0200074 ((2s,5s,6s)-2,6,12-trihydroxy-10-[(2s,3r)-3-hydroxybutan-2-yl]-5-[(1r)-1-hydroxyethyl]-4,11-dimethyl-7-oxa-4-azatricyclo[6.4.0.0²,⁶]dodeca-1(12),8,10-trien-3-one)

PDB for NP0200074 ((2s,5s,6s)-2,6,12-trihydroxy-10-[(2s,3r)-3-hydroxybutan-2-yl]-5-[(1r)-1-hydroxyethyl]-4,11-dimethyl-7-oxa-4-azatricyclo[6.4.0.0²,⁶]dodeca-1(12),8,10-trien-3-one)

3D PDB for NP0200074 ((2s,5s,6s)-2,6,12-trihydroxy-10-[(2s,3r)-3-hydroxybutan-2-yl]-5-[(1r)-1-hydroxyethyl]-4,11-dimethyl-7-oxa-4-azatricyclo[6.4.0.0²,⁶]dodeca-1(12),8,10-trien-3-one)

SMILES for NP0200074 ((2s,5s,6s)-2,6,12-trihydroxy-10-[(2s,3r)-3-hydroxybutan-2-yl]-5-[(1r)-1-hydroxyethyl]-4,11-dimethyl-7-oxa-4-azatricyclo[6.4.0.0²,⁶]dodeca-1(12),8,10-trien-3-one)

INCHI for NP0200074 ((2s,5s,6s)-2,6,12-trihydroxy-10-[(2s,3r)-3-hydroxybutan-2-yl]-5-[(1r)-1-hydroxyethyl]-4,11-dimethyl-7-oxa-4-azatricyclo[6.4.0.0²,⁶]dodeca-1(12),8,10-trien-3-one)

Structure for NP0200074 ((2s,5s,6s)-2,6,12-trihydroxy-10-[(2s,3r)-3-hydroxybutan-2-yl]-5-[(1r)-1-hydroxyethyl]-4,11-dimethyl-7-oxa-4-azatricyclo[6.4.0.0²,⁶]dodeca-1(12),8,10-trien-3-one)

3D Structure for NP0200074 ((2s,5s,6s)-2,6,12-trihydroxy-10-[(2s,3r)-3-hydroxybutan-2-yl]-5-[(1r)-1-hydroxyethyl]-4,11-dimethyl-7-oxa-4-azatricyclo[6.4.0.0²,⁶]dodeca-1(12),8,10-trien-3-one)