NP-MRD: Showing NP-Card for (4r,6r,10r,12r)-4,10-dihydroxy-6,12-dipentyl-1,7-dioxacyclododecane-2,8-dione (NP0199951)

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Record Information

Version

2.0

Created at

2022-09-04 18:41:21 UTC

Updated at

2022-09-04 18:41:21 UTC

NP-MRD ID

NP0199951

Secondary Accession Numbers

None

Natural Product Identification

Common Name

(4r,6r,10r,12r)-4,10-dihydroxy-6,12-dipentyl-1,7-dioxacyclododecane-2,8-dione

Description

Verbalactone belongs to the class of organic compounds known as macrolides and analogues. These are organic compounds containing a lactone ring of at least twelve members. (4r,6r,10r,12r)-4,10-dihydroxy-6,12-dipentyl-1,7-dioxacyclododecane-2,8-dione was first documented in 2001 (PMID: 11520236). Based on a literature review very few articles have been published on verbalactone.

Structure

MOL 3D MOL SDF PDB SMILES InChI


  Mrv1652309042220412D          

 26 26  0  0  1  0            999 V2000
   -1.4289   -3.3000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7145   -2.8875    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7145   -2.0625    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0000   -1.6500    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0000   -0.8250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7145   -0.4125    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    0.0000   -0.0000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0000    0.8250    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   -0.7145    1.2375    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.7145    1.2375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4289    0.8250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4289   -0.0000    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.1434    1.2375    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.8579    0.8250    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    3.5724    1.2375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.2868    0.8250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.0013    1.2375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.7158    0.8250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.4302    1.2375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.8579   -0.0000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.1434   -0.4125    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    1.3229   -0.4987    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.1434   -1.2375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4289   -1.6500    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4289   -2.4750    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.7145   -1.2375    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  1  0  0  0  0
  3  4  1  0  0  0  0
  4  5  1  0  0  0  0
  6  5  1  1  0  0  0
  6  7  1  0  0  0  0
  7  8  1  0  0  0  0
  8  9  1  1  0  0  0
  8 10  1  0  0  0  0
 10 11  1  0  0  0  0
 11 12  2  0  0  0  0
 11 13  1  0  0  0  0
 13 14  1  0  0  0  0
 14 15  1  6  0  0  0
 15 16  1  0  0  0  0
 16 17  1  0  0  0  0
 17 18  1  0  0  0  0
 18 19  1  0  0  0  0
 14 20  1  0  0  0  0
 20 21  1  0  0  0  0
 21 22  1  6  0  0  0
 21 23  1  0  0  0  0
 23 24  1  0  0  0  0
 24 25  2  0  0  0  0
 24 26  1  0  0  0  0
  6 26  1  0  0  0  0
M  END

     RDKit          3D

 62 62  0  0  0  0  0  0  0  0999 V2000
    6.7558    1.8245   -0.4685 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.1298    0.6017    0.1203 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.8534    0.2112   -0.6941 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.3309   -1.0019   -0.0187 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.1611   -1.6863   -0.5715 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.8695   -0.9624   -0.7058 C   0  0  2  0  0  0  0  0  0  0  0  0
    1.8956    0.2096   -1.6282 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4880    1.5169   -0.9482 C   0  0  1  0  0  0  0  0  0  0  0  0
    2.0439    2.6025   -1.6227 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0150    1.5904   -0.9835 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5997    1.8433    0.3521 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3956    2.9788    0.8335 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2973    0.8659    0.9548 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3369    0.0550    0.4970 C   0  0  2  0  0  0  0  0  0  0  0  0
   -3.4505    0.1707    1.5331 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.6510   -0.6443    1.1919 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.2445   -0.2328   -0.1293 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.6654    1.2073   -0.0887 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.2821    1.6406   -1.4184 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9589   -1.3612    0.2388 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4703   -2.1108    1.4316 C   0  0  1  0  0  0  0  0  0  0  0  0
   -2.1755   -3.3224    1.5510 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.0035   -2.4983    1.2566 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.8960   -1.3556    1.5280 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.1689   -1.1336    2.7559 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.4451   -0.5299    0.5873 O   0  0  0  0  0  0  0  0  0  0  0  0
    6.2727    2.1760   -1.3988 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.7193    2.6446    0.2834 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.8517    1.6466   -0.6454 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.7769   -0.2964    0.0456 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.7519    0.7532    1.1535 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.1895    0.0638   -1.7151 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.2326    1.1299   -0.5587 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.2055   -0.7698    1.0832 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.1873   -1.7616   -0.0446 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.0253   -2.6389    0.0460 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.4531   -2.0993   -1.5896 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.1370   -1.7010   -1.1212 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.1566    0.0300   -2.4956 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.8457    0.3431   -2.1597 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.8223    1.5444    0.0989 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.5302    3.2167   -1.0353 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4635    0.7205   -1.4904 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3148    2.4777   -1.6158 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7372    0.4837   -0.4428 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.7661    1.2258    1.6568 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9757   -0.1492    2.4930 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.3910   -0.5071    2.0230 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.3579   -1.7115    1.0920 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.5132   -0.3509   -0.9605 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.1195   -0.8889   -0.3554 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.4061    1.3826    0.7167 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.7985    1.8787    0.0730 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.4789    1.9262   -2.1175 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.9265    0.8172   -1.7864 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.9136    2.5225   -1.1927 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1625   -1.3621   -0.5312 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8213   -1.8774   -0.2283 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5340   -1.5853    2.3824 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3635   -3.5427    2.4964 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.1175   -2.9069    0.2344 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.2699   -3.3132    1.9594 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  3  4  1  0
  4  5  1  0
  5  6  1  0
  6  7  1  0
  7  8  1  0
  8  9  1  0
  8 10  1  0
 10 11  1  0
 11 12  2  0
 11 13  1  0
 13 14  1  0
 14 15  1  0
 15 16  1  0
 16 17  1  0
 17 18  1  0
 18 19  1  0
 14 20  1  0
 20 21  1  0
 21 22  1  0
 21 23  1  0
 23 24  1  0
 24 25  2  0
 24 26  1  0
 26  6  1  0
  1 27  1  0
  1 28  1  0
  1 29  1  0
  2 30  1  0
  2 31  1  0
  3 32  1  0
  3 33  1  0
  4 34  1  0
  4 35  1  0
  5 36  1  0
  5 37  1  0
  6 38  1  6
  7 39  1  0
  7 40  1  0
  8 41  1  1
  9 42  1  0
 10 43  1  0
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 14 45  1  6
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 16 48  1  0
 16 49  1  0
 17 50  1  0
 17 51  1  0
 18 52  1  0
 18 53  1  0
 19 54  1  0
 19 55  1  0
 19 56  1  0
 20 57  1  0
 20 58  1  0
 21 59  1  1
 22 60  1  0
 23 61  1  0
 23 62  1  0
M  END


  Mrv1652309042220412D          

 26 26  0  0  1  0            999 V2000
   -1.4289   -3.3000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7145   -2.8875    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7145   -2.0625    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0000   -1.6500    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0000   -0.8250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7145   -0.4125    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    0.0000   -0.0000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0000    0.8250    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   -0.7145    1.2375    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.7145    1.2375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4289    0.8250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4289   -0.0000    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.1434    1.2375    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.8579    0.8250    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    3.5724    1.2375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.2868    0.8250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.0013    1.2375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.7158    0.8250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.4302    1.2375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.8579   -0.0000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.1434   -0.4125    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    1.3229   -0.4987    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.1434   -1.2375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4289   -1.6500    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4289   -2.4750    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.7145   -1.2375    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  1  0  0  0  0
  3  4  1  0  0  0  0
  4  5  1  0  0  0  0
  6  5  1  1  0  0  0
  6  7  1  0  0  0  0
  7  8  1  0  0  0  0
  8  9  1  1  0  0  0
  8 10  1  0  0  0  0
 10 11  1  0  0  0  0
 11 12  2  0  0  0  0
 11 13  1  0  0  0  0
 13 14  1  0  0  0  0
 14 15  1  6  0  0  0
 15 16  1  0  0  0  0
 16 17  1  0  0  0  0
 17 18  1  0  0  0  0
 18 19  1  0  0  0  0
 14 20  1  0  0  0  0
 20 21  1  0  0  0  0
 21 22  1  6  0  0  0
 21 23  1  0  0  0  0
 23 24  1  0  0  0  0
 24 25  2  0  0  0  0
 24 26  1  0  0  0  0
  6 26  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0199951

> <DATABASE_NAME>
NP-MRD

> <SMILES>
CCCCC[C@@H]1C[C@@H](O)CC(=O)O[C@H](CCCCC)C[C@@H](O)CC(=O)O1

> <INCHI_IDENTIFIER>
InChI=1S/C20H36O6/c1-3-5-7-9-17-11-15(21)13-20(24)26-18(10-8-6-4-2)12-16(22)14-19(23)25-17/h15-18,21-22H,3-14H2,1-2H3/t15-,16-,17-,18-/m1/s1

> <INCHI_KEY>
PENUWXDRGVMHGY-BRSBDYLESA-N

> <FORMULA>
C20H36O6

> <MOLECULAR_WEIGHT>
372.502

> <EXACT_MASS>
372.251188879

> <JCHEM_ACCEPTOR_COUNT>
4

> <JCHEM_ATOM_COUNT>
62

> <JCHEM_AVERAGE_POLARIZABILITY>
43.102755892907034

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
2

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
1

> <JCHEM_IUPAC>
(4R,6R,10R,12R)-4,10-dihydroxy-6,12-dipentyl-1,7-dioxacyclododecane-2,8-dione

> <JCHEM_LOGP>
3.1266366246666646

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
1

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA>
15.21556792043507

> <JCHEM_PKA_STRONGEST_ACIDIC>
14.613507888177196

> <JCHEM_PKA_STRONGEST_BASIC>
-2.836181129607869

> <JCHEM_POLAR_SURFACE_AREA>
93.06000000000002

> <JCHEM_REFRACTIVITY>
98.25359999999998

> <JCHEM_ROTATABLE_BOND_COUNT>
8

> <JCHEM_RULE_OF_FIVE>
1

> <JCHEM_TRADITIONAL_IUPAC>
(4R,6R,10R,12R)-4,10-dihydroxy-6,12-dipentyl-1,7-dioxacyclododecane-2,8-dione

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 04-SEP-22   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   04-SEP-22         0                                  
HETATM    1  C   UNK     0      -2.667  -6.160   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0      -1.334  -5.390   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0      -1.334  -3.850   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0      -0.000  -3.080   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0      -0.000  -1.540   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0       1.334  -0.770   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0       0.000  -0.000   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0      -0.000   1.540   0.000  0.00  0.00           C+0
HETATM    9  O   UNK     0      -1.334   2.310   0.000  0.00  0.00           O+0
HETATM   10  C   UNK     0       1.334   2.310   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0       2.667   1.540   0.000  0.00  0.00           C+0
HETATM   12  O   UNK     0       2.667  -0.000   0.000  0.00  0.00           O+0
HETATM   13  O   UNK     0       4.001   2.310   0.000  0.00  0.00           O+0
HETATM   14  C   UNK     0       5.335   1.540   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0       6.668   2.310   0.000  0.00  0.00           C+0
HETATM   16  C   UNK     0       8.002   1.540   0.000  0.00  0.00           C+0
HETATM   17  C   UNK     0       9.336   2.310   0.000  0.00  0.00           C+0
HETATM   18  C   UNK     0      10.669   1.540   0.000  0.00  0.00           C+0
HETATM   19  C   UNK     0      12.003   2.310   0.000  0.00  0.00           C+0
HETATM   20  C   UNK     0       5.335  -0.000   0.000  0.00  0.00           C+0
HETATM   21  C   UNK     0       4.001  -0.770   0.000  0.00  0.00           C+0
HETATM   22  O   UNK     0       2.469  -0.931   0.000  0.00  0.00           O+0
HETATM   23  C   UNK     0       4.001  -2.310   0.000  0.00  0.00           C+0
HETATM   24  C   UNK     0       2.667  -3.080   0.000  0.00  0.00           C+0
HETATM   25  O   UNK     0       2.667  -4.620   0.000  0.00  0.00           O+0
HETATM   26  O   UNK     0       1.334  -2.310   0.000  0.00  0.00           O+0
CONECT    1    2                                                            
CONECT    2    1    3                                                       
CONECT    3    2    4                                                       
CONECT    4    3    5                                                       
CONECT    5    4    6                                                       
CONECT    6    5    7   26                                                  
CONECT    7    6    8                                                       
CONECT    8    7    9   10                                                  
CONECT    9    8                                                            
CONECT   10    8   11                                                       
CONECT   11   10   12   13                                                  
CONECT   12   11                                                            
CONECT   13   11   14                                                       
CONECT   14   13   15   20                                                  
CONECT   15   14   16                                                       
CONECT   16   15   17                                                       
CONECT   17   16   18                                                       
CONECT   18   17   19                                                       
CONECT   19   18                                                            
CONECT   20   14   21                                                       
CONECT   21   20   22   23                                                  
CONECT   22   21                                                            
CONECT   23   21   24                                                       
CONECT   24   23   25   26                                                  
CONECT   25   24                                                            
CONECT   26   24    6                                                       
MASTER        0    0    0    0    0    0    0    0   26    0   52    0
END

View in JSmol

Synonyms

Value	Source
4R,6R,10R,12R,4,10-Dihydroxy-2,8-dioxo-6,12-dipentyl-1,7-dioxacyclododecane	MeSH

Chemical Formula

C₂₀H₃₆O₆

Average Mass

372.5020 Da

Monoisotopic Mass

372.25119 Da

IUPAC Name

(4R,6R,10R,12R)-4,10-dihydroxy-6,12-dipentyl-1,7-dioxacyclododecane-2,8-dione

Traditional Name

(4R,6R,10R,12R)-4,10-dihydroxy-6,12-dipentyl-1,7-dioxacyclododecane-2,8-dione

CAS Registry Number

Not Available

SMILES

CCCCC[C@@H]1C[C@@H](O)CC(=O)O[C@H](CCCCC)C[C@@H](O)CC(=O)O1

InChI Identifier

InChI=1S/C20H36O6/c1-3-5-7-9-17-11-15(21)13-20(24)26-18(10-8-6-4-2)12-16(22)14-19(23)25-17/h15-18,21-22H,3-14H2,1-2H3/t15-,16-,17-,18-/m1/s1

InChI Key

PENUWXDRGVMHGY-BRSBDYLESA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Not Available

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as macrolides and analogues. These are organic compounds containing a lactone ring of at least twelve members.

Kingdom

Organic compounds

Super Class

Phenylpropanoids and polyketides

Class

Macrolides and analogues

Sub Class

Not Available

Direct Parent

Macrolides and analogues

Alternative Parents

Substituents

Macrolide
Dicarboxylic acid or derivatives
Secondary alcohol
Lactone
Carboxylic acid ester
Oxacycle
Organoheterocyclic compound
Carboxylic acid derivative
Organic oxygen compound
Organic oxide
Hydrocarbon derivative
Organooxygen compound
Carbonyl group
Alcohol
Aliphatic heteromonocyclic compound

Molecular Framework

Aliphatic heteromonocyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	3.13	ChemAxon
pKa (Strongest Acidic)	14.61	ChemAxon
pKa (Strongest Basic)	-2.8	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	4	ChemAxon
Hydrogen Donor Count	2	ChemAxon
Polar Surface Area	93.06 Å²	ChemAxon
Rotatable Bond Count	8	ChemAxon
Refractivity	98.25 m³·mol⁻¹	ChemAxon
Polarizability	43.1 Å³	ChemAxon
Number of Rings	1	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	Yes	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

9660403

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

11485584

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

Magiatis P, Spanakis D, Mitaku S, Tsitsa E, Mentis A, Harvala C: Verbalactone, a new macrocyclic dimer lactone from the roots of Verbascum undulatum with antibacterial activity. J Nat Prod. 2001 Aug;64(8):1093-4. doi: 10.1021/np010025r. [PubMed:11520236 ]
LOTUS database [Link]

Showing NP-Card for (4r,6r,10r,12r)-4,10-dihydroxy-6,12-dipentyl-1,7-dioxacyclododecane-2,8-dione (NP0199951)

MOL for NP0199951 ((4r,6r,10r,12r)-4,10-dihydroxy-6,12-dipentyl-1,7-dioxacyclododecane-2,8-dione)

3D MOL for NP0199951 ((4r,6r,10r,12r)-4,10-dihydroxy-6,12-dipentyl-1,7-dioxacyclododecane-2,8-dione)

3D SDF for NP0199951 ((4r,6r,10r,12r)-4,10-dihydroxy-6,12-dipentyl-1,7-dioxacyclododecane-2,8-dione)

3D-SDF for NP0199951 ((4r,6r,10r,12r)-4,10-dihydroxy-6,12-dipentyl-1,7-dioxacyclododecane-2,8-dione)

PDB for NP0199951 ((4r,6r,10r,12r)-4,10-dihydroxy-6,12-dipentyl-1,7-dioxacyclododecane-2,8-dione)

3D PDB for NP0199951 ((4r,6r,10r,12r)-4,10-dihydroxy-6,12-dipentyl-1,7-dioxacyclododecane-2,8-dione)

SMILES for NP0199951 ((4r,6r,10r,12r)-4,10-dihydroxy-6,12-dipentyl-1,7-dioxacyclododecane-2,8-dione)

INCHI for NP0199951 ((4r,6r,10r,12r)-4,10-dihydroxy-6,12-dipentyl-1,7-dioxacyclododecane-2,8-dione)

Structure for NP0199951 ((4r,6r,10r,12r)-4,10-dihydroxy-6,12-dipentyl-1,7-dioxacyclododecane-2,8-dione)

3D Structure for NP0199951 ((4r,6r,10r,12r)-4,10-dihydroxy-6,12-dipentyl-1,7-dioxacyclododecane-2,8-dione)