NP-MRD: Showing NP-Card for (1s,2s,8s)-14-oxa-7-azatetracyclo[6.6.1.0¹,¹¹.0²,⁷]pentadeca-9,11-dien-13-one (NP0198911)

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Record Information

Version

2.0

Created at

2022-09-04 17:26:58 UTC

Updated at

2022-09-04 17:26:58 UTC

NP-MRD ID

NP0198911

Secondary Accession Numbers

None

Natural Product Identification

Common Name

(1s,2s,8s)-14-oxa-7-azatetracyclo[6.6.1.0¹,¹¹.0²,⁷]pentadeca-9,11-dien-13-one

Description

Allosecurinine, also known as securinan-11-one, belongs to the class of organic compounds known as indolizidines. These are polycyclic compounds containing an indolizidine, which is a bicyclic heterocycle containing a saturated six-member ring fused to a saturated five-member ring, one of the bridging atoms being nitrogen. (1s,2s,8s)-14-oxa-7-azatetracyclo[6.6.1.0¹,¹¹.0²,⁷]pentadeca-9,11-dien-13-one is found in Margaritaria indica. (1s,2s,8s)-14-oxa-7-azatetracyclo[6.6.1.0¹,¹¹.0²,⁷]pentadeca-9,11-dien-13-one was first documented in 2012 (PMID: 22913575). Based on a literature review a small amount of articles have been published on Allosecurinine (PMID: 32043725) (PMID: 35576619) (PMID: 27792748) (PMID: 25413794).

Structure

MOL 3D MOL SDF PDB SMILES InChI

     RDKit          3D

 31 34  0  0  0  0  0  0  0  0999 V2000
    2.9692    3.4177    0.2054 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.4023    2.3258   -0.0564 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.8593    0.9968    0.3973 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.0319    0.1018   -0.0485 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.9666   -1.3422    0.0542 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.2185   -2.0248   -0.8434 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0667   -1.2591   -1.4033 C   0  0  2  0  0  0  0  0  0  0  0  0
    0.6822    0.0254   -1.9985 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.8991    0.7893   -0.7156 C   0  0  2  0  0  0  0  0  0  0  0  0
    1.2363    2.1282   -0.8201 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4326    0.5778   -0.0519 C   0  0  2  0  0  0  0  0  0  0  0  0
   -0.4741    0.7705    1.4251 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8341    0.2729    1.8765 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7434   -0.1112    0.7471 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0724   -1.0571   -0.2422 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6852   -0.8151   -0.2935 N   0  0  0  0  0  0  0  0  0  0  0  0
    3.7520    0.8672    1.0046 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.4937   -1.9125    0.7977 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.4346   -3.0273   -1.1270 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4813   -1.8226   -2.1644 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.6337   -0.1837   -2.4974 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0832    0.4887   -2.6446 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1562    1.2432   -0.5791 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.2798    0.0708    1.8738 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2564    1.7952    1.7549 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7586   -0.5588    2.6037 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3194    1.1465    2.3902 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.6051   -0.6540    1.1822 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.1735    0.7813    0.2264 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.6118   -0.9453   -1.1926 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2386   -2.0855    0.1394 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  2  0
  2 10  1  0
  9 10  1  6
  9  8  1  0
  8  7  1  0
  7  6  1  0
  6  5  2  0
  5  4  1  0
  4  3  2  0
  7 16  1  0
 16 15  1  0
 15 14  1  0
 14 13  1  0
 13 12  1  0
 12 11  1  0
  3  2  1  0
 11 16  1  0
  4  9  1  0
 11  9  1  0
  8 21  1  0
  8 22  1  0
  7 20  1  6
  6 19  1  0
  5 18  1  0
  3 17  1  0
 15 30  1  0
 15 31  1  0
 14 28  1  0
 14 29  1  0
 13 26  1  0
 13 27  1  0
 12 24  1  0
 12 25  1  0
 11 23  1  6
M  END


  Mrv1652309042219262D          

 16 19  0  0  1  0            999 V2000
    0.6745   -1.9760    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.1729   -1.3186    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.9304   -0.5260    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.6085   -0.0420    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.6393    0.8266    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.4190    1.1771    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.1148    0.6685    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    2.6803    0.0633    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.3331   -0.5551    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    2.0052   -1.3381    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.2154   -0.7305    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    3.6056   -1.4574    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.4302   -1.4828    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.8646   -0.7814    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.4743   -0.0545    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.6497   -0.0291    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  2  0  0  0  0
  2  3  1  0  0  0  0
  3  4  2  0  0  0  0
  4  5  1  0  0  0  0
  5  6  2  0  0  0  0
  6  7  1  0  0  0  0
  7  8  1  6  0  0  0
  9  8  1  6  0  0  0
  4  9  1  0  0  0  0
  9 10  1  0  0  0  0
  2 10  1  0  0  0  0
  9 11  1  0  0  0  0
 11 12  1  0  0  0  0
 12 13  1  0  0  0  0
 13 14  1  0  0  0  0
 14 15  1  0  0  0  0
 15 16  1  0  0  0  0
  7 16  1  0  0  0  0
 11 16  1  1  0  0  0
M  END
> <DATABASE_ID>
NP0198911

> <DATABASE_NAME>
NP-MRD

> <SMILES>
O=C1O[C@@]23C[C@@H](C=CC2=C1)N1CCCC[C@@H]31

> <INCHI_IDENTIFIER>
InChI=1S/C13H15NO2/c15-12-7-9-4-5-10-8-13(9,16-12)11-3-1-2-6-14(10)11/h4-5,7,10-11H,1-3,6,8H2/t10-,11+,13+/m1/s1

> <INCHI_KEY>
SWZMSZQQJRKFBP-MDZLAQPJSA-N

> <FORMULA>
C13H15NO2

> <MOLECULAR_WEIGHT>
217.268

> <EXACT_MASS>
217.110278727

> <JCHEM_ACCEPTOR_COUNT>
2

> <JCHEM_ATOM_COUNT>
31

> <JCHEM_AVERAGE_POLARIZABILITY>
22.793776926612885

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
0

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
1

> <JCHEM_IUPAC>
(1S,2S,8S)-14-oxa-7-azatetracyclo[6.6.1.0^{1,11}.0^{2,7}]pentadeca-9,11-dien-13-one

> <JCHEM_LOGP>
1.4055138189999998

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
4

> <JCHEM_PHYSIOLOGICAL_CHARGE>
1

> <JCHEM_PKA_STRONGEST_BASIC>
9.504628886284037

> <JCHEM_POLAR_SURFACE_AREA>
29.54

> <JCHEM_REFRACTIVITY>
61.31910000000001

> <JCHEM_ROTATABLE_BOND_COUNT>
0

> <JCHEM_RULE_OF_FIVE>
1

> <JCHEM_TRADITIONAL_IUPAC>
(1S,2S,8S)-14-oxa-7-azatetracyclo[6.6.1.0^{1,11}.0^{2,7}]pentadeca-9,11-dien-13-one

> <JCHEM_VEBER_RULE>
1

$$$$

HEADER    PROTEIN                                 04-SEP-22   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   04-SEP-22         0                                  
HETATM    1  O   UNK     0       1.259  -3.689   0.000  0.00  0.00           O+0
HETATM    2  C   UNK     0       2.189  -2.461   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0       1.737  -0.982   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0       3.002  -0.078   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0       3.060   1.543   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0       4.516   2.197   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0       5.814   1.248   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0       5.003   0.118   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0       4.355  -1.036   0.000  0.00  0.00           C+0
HETATM   10  O   UNK     0       3.743  -2.498   0.000  0.00  0.00           O+0
HETATM   11  C   UNK     0       6.002  -1.364   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0       6.730  -2.720   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0       8.270  -2.768   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0       9.081  -1.459   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0       8.352  -0.102   0.000  0.00  0.00           C+0
HETATM   16  N   UNK     0       6.813  -0.054   0.000  0.00  0.00           N+0
CONECT    1    2                                                            
CONECT    2    1    3   10                                                  
CONECT    3    2    4                                                       
CONECT    4    3    5    9                                                  
CONECT    5    4    6                                                       
CONECT    6    5    7                                                       
CONECT    7    6    8   16                                                  
CONECT    8    7    9                                                       
CONECT    9    8    4   10   11                                             
CONECT   10    9    2                                                       
CONECT   11    9   12   16                                                  
CONECT   12   11   13                                                       
CONECT   13   12   14                                                       
CONECT   14   13   15                                                       
CONECT   15   14   16                                                       
CONECT   16   15    7   11                                                  
MASTER        0    0    0    0    0    0    0    0   16    0   38    0
END

View in JSmol

Synonyms

Value	Source
Securinan-11-one	MeSH
Securinine	MeSH
Securinine methiodide	MeSH
Allonorsecurinine	MeSH
Securinine nitrate	MeSH

Chemical Formula

C₁₃H₁₅NO₂

Average Mass

217.2680 Da

Monoisotopic Mass

217.11028 Da

IUPAC Name

(1S,2S,8S)-14-oxa-7-azatetracyclo[6.6.1.0^{1,11}.0^{2,7}]pentadeca-9,11-dien-13-one

Traditional Name

(1S,2S,8S)-14-oxa-7-azatetracyclo[6.6.1.0^{1,11}.0^{2,7}]pentadeca-9,11-dien-13-one

CAS Registry Number

Not Available

SMILES

O=C1O[C@@]23C[C@@H](C=CC2=C1)N1CCCC[C@@H]31

InChI Identifier

InChI=1S/C13H15NO2/c15-12-7-9-4-5-10-8-13(9,16-12)11-3-1-2-6-14(10)11/h4-5,7,10-11H,1-3,6,8H2/t10-,11+,13+/m1/s1

InChI Key

SWZMSZQQJRKFBP-MDZLAQPJSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Margaritaria indica	LOTUS Database	35616633

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as indolizidines. These are polycyclic compounds containing an indolizidine, which is a bicyclic heterocycle containing a saturated six-member ring fused to a saturated five-member ring, one of the bridging atoms being nitrogen.

Kingdom

Organic compounds

Super Class

Organoheterocyclic compounds

Class

Indolizidines

Sub Class

Not Available

Direct Parent

Indolizidines

Alternative Parents

Substituents

Indolizidine
Azepine
2-furanone
N-alkylpyrrolidine
Piperidine
Dihydrofuran
Alpha,beta-unsaturated carboxylic ester
Enoate ester
Pyrrolidine
Amino acid or derivatives
Carboxylic acid ester
Tertiary aliphatic amine
Tertiary amine
Lactone
Carboxylic acid derivative
Oxacycle
Azacycle
Monocarboxylic acid or derivatives
Amine
Hydrocarbon derivative
Carbonyl group
Organic oxide
Organic nitrogen compound
Organooxygen compound
Organic oxygen compound
Organonitrogen compound
Aliphatic heteropolycyclic compound

Molecular Framework

Aliphatic heteropolycyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	1.41	ChemAxon
pKa (Strongest Basic)	9.5	ChemAxon
Physiological Charge	1	ChemAxon
Hydrogen Acceptor Count	2	ChemAxon
Hydrogen Donor Count	0	ChemAxon
Polar Surface Area	29.54 Å²	ChemAxon
Rotatable Bond Count	0	ChemAxon
Refractivity	61.32 m³·mol⁻¹	ChemAxon
Polarizability	22.79 Å³	ChemAxon
Number of Rings	4	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	Yes	ChemAxon
Veber's Rule	Yes	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

C00058807

Chemspider ID

20002231

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

12305986

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

Lee S, Kang G, Chung G, Kim D, Lee HY, Han S: Biosynthetically Inspired Syntheses of Secu'amamine A and Fluvirosaones A and B. Angew Chem Int Ed Engl. 2020 Apr 20;59(17):6894-6901. doi: 10.1002/anie.201916613. Epub 2020 Mar 9. [PubMed:32043725 ]
Kang G, Han S: Synthesis of Dimeric Securinega Alkaloid Flueggeacosine B: From Pd-Catalyzed Cross-Coupling to Cu-Catalyzed Cross-Dehydrogenative Coupling. J Am Chem Soc. 2022 May 25;144(20):8932-8937. doi: 10.1021/jacs.2c03861. Epub 2022 May 16. [PubMed:35576619 ]
Stefanowicz-Hajduk J, Sparzak-Stefanowska B, Krauze-Baranowska M, Ochocka JR: Securinine from Phyllanthus glaucus Induces Cell Cycle Arrest and Apoptosis in Human Cervical Cancer HeLa Cells. PLoS One. 2016 Oct 28;11(10):e0165372. doi: 10.1371/journal.pone.0165372. eCollection 2016. [PubMed:27792748 ]
Raj D, Kokotkiewicz A, Luczkiewicz M: Production of therapeutically relevant indolizidine alkaloids in Securinega suffruticosa in vitro shoots maintained in liquid culture systems. Appl Biochem Biotechnol. 2015 Feb;175(3):1576-87. doi: 10.1007/s12010-014-1386-0. Epub 2014 Nov 21. [PubMed:25413794 ]
Chen JH, Levine SR, Buergler JF, McMahon TC, Medeiros MR, Wood JL: Total syntheses of (+/-)-securinine and (+/-)- allosecurinine. Org Lett. 2012 Sep 7;14(17):4531-3. doi: 10.1021/ol3020072. Epub 2012 Aug 22. [PubMed:22913575 ]
LOTUS database [Link]

Showing NP-Card for (1s,2s,8s)-14-oxa-7-azatetracyclo[6.6.1.0¹,¹¹.0²,⁷]pentadeca-9,11-dien-13-one (NP0198911)

MOL for NP0198911 ((1s,2s,8s)-14-oxa-7-azatetracyclo[6.6.1.0¹,¹¹.0²,⁷]pentadeca-9,11-dien-13-one)

3D MOL for NP0198911 ((1s,2s,8s)-14-oxa-7-azatetracyclo[6.6.1.0¹,¹¹.0²,⁷]pentadeca-9,11-dien-13-one)

3D SDF for NP0198911 ((1s,2s,8s)-14-oxa-7-azatetracyclo[6.6.1.0¹,¹¹.0²,⁷]pentadeca-9,11-dien-13-one)

3D-SDF for NP0198911 ((1s,2s,8s)-14-oxa-7-azatetracyclo[6.6.1.0¹,¹¹.0²,⁷]pentadeca-9,11-dien-13-one)

PDB for NP0198911 ((1s,2s,8s)-14-oxa-7-azatetracyclo[6.6.1.0¹,¹¹.0²,⁷]pentadeca-9,11-dien-13-one)

3D PDB for NP0198911 ((1s,2s,8s)-14-oxa-7-azatetracyclo[6.6.1.0¹,¹¹.0²,⁷]pentadeca-9,11-dien-13-one)

SMILES for NP0198911 ((1s,2s,8s)-14-oxa-7-azatetracyclo[6.6.1.0¹,¹¹.0²,⁷]pentadeca-9,11-dien-13-one)

INCHI for NP0198911 ((1s,2s,8s)-14-oxa-7-azatetracyclo[6.6.1.0¹,¹¹.0²,⁷]pentadeca-9,11-dien-13-one)

Structure for NP0198911 ((1s,2s,8s)-14-oxa-7-azatetracyclo[6.6.1.0¹,¹¹.0²,⁷]pentadeca-9,11-dien-13-one)

3D Structure for NP0198911 ((1s,2s,8s)-14-oxa-7-azatetracyclo[6.6.1.0¹,¹¹.0²,⁷]pentadeca-9,11-dien-13-one)