NP-MRD: Showing NP-Card for 2,5-dihydroxy-6-(hydroxymethyl)-1,3-dimethoxyanthracene-9,10-dione (NP0198754)

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Record Information

Version

2.0

Created at

2022-09-04 17:15:38 UTC

Updated at

2022-09-04 17:15:38 UTC

NP-MRD ID

NP0198754

Secondary Accession Numbers

None

Natural Product Identification

Common Name

2,5-dihydroxy-6-(hydroxymethyl)-1,3-dimethoxyanthracene-9,10-dione

Description

SCHEMBL16226288 belongs to the class of organic compounds known as hydroxyanthraquinones. Hydroxyanthraquinones are compounds containing a hydroxyanthraquinone moiety, which consists of an anthracene bearing a quinone, and hydroxyl group. Based on a literature review very few articles have been published on SCHEMBL16226288.

Structure

MOL 3D MOL SDF PDB SMILES InChI

     RDKit          3D

 38 40  0  0  0  0  0  0  0  0999 V2000
   -4.3338   -3.1445    0.0269 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.2623   -1.8306   -0.2176 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.1308   -1.0786   -0.1039 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8985   -1.4876    0.3675 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8057   -0.5695    0.3601 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0133    0.6903   -0.1178 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2434    1.1008   -0.5671 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3499    2.4131   -1.0140 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.6490    3.5013   -0.2336 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.3004    0.2602   -0.5786 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.4552    0.7662   -1.0410 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.1654    1.5903   -0.3006 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0563    2.7603   -0.7234 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.4727    1.0640    0.0463 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.5978    1.7969   -0.3756 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.8834    1.2519   -0.2793 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.0136   -0.0128    0.2423 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.3632   -0.5956    0.4770 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.9967   -0.4969   -0.8044 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.9061   -0.7733    0.6722 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.1768   -1.9986    1.1948 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.6761   -0.2027    0.5459 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.5015   -1.0490    0.7225 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.6148   -2.2224    1.1951 O   0  0  0  0  0  0  0  0  0  0  0  0
   -5.2319   -3.5651   -0.5931 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.4565   -3.7074   -0.5293 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.3112   -3.6297    1.0064 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7831   -2.4647    0.7679 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3663    4.4949   -0.6756 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.7455    3.5791    0.0233 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1225    3.5051    0.7514 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.3389    0.1938   -1.1080 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.4266    2.8091   -0.7603 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.7193    1.8650   -0.6000 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.4992   -1.4519    1.0182 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.9607    0.3002    1.0301 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.2629   -1.0571   -1.3789 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.5050   -2.6046    1.5544 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  3  4  2  0
  4  5  1  0
  5  6  2  0
  6 12  1  0
 12 13  2  0
 12 14  1  0
 14 15  2  0
 15 16  1  0
 16 17  2  0
 17 18  1  0
 18 19  1  0
 17 20  1  0
 20 21  1  0
 20 22  2  0
 22 23  1  0
 23 24  2  0
  6  7  1  0
  7  8  1  0
  8  9  1  0
  7 10  2  0
 10 11  1  0
 10  3  1  0
 23  5  1  0
 22 14  1  0
  1 25  1  0
  1 26  1  0
  1 27  1  0
  4 28  1  0
 15 33  1  0
 16 34  1  0
 18 35  1  0
 18 36  1  0
 19 37  1  0
 21 38  1  0
  9 29  1  0
  9 30  1  0
  9 31  1  0
 11 32  1  0
M  END


  Mrv1652309042219152D          

 24 26  0  0  0  0            999 V2000
    5.7158    0.8250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.0013    1.2375    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.2868    0.8250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.5724    1.2375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.8579    0.8250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.8579    0.0000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.5724   -0.4125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.5724   -1.2375    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.2868   -1.6500    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.2868   -0.0000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.0013   -0.4125    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.1434   -0.4125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.1434   -1.2375    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.4289   -0.0000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7145   -0.4125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0000    0.0000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0000    0.8250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7145    1.2375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4289    0.8250    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.7145    1.2375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7145    2.0625    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.4289    0.8250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.1434    1.2375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.1434    2.0625    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  1  0  0  0  0
  3  4  2  0  0  0  0
  4  5  1  0  0  0  0
  5  6  2  0  0  0  0
  6  7  1  0  0  0  0
  7  8  1  0  0  0  0
  8  9  1  0  0  0  0
  7 10  2  0  0  0  0
  3 10  1  0  0  0  0
 10 11  1  0  0  0  0
  6 12  1  0  0  0  0
 12 13  2  0  0  0  0
 12 14  1  0  0  0  0
 14 15  2  0  0  0  0
 15 16  1  0  0  0  0
 16 17  2  0  0  0  0
 17 18  1  0  0  0  0
 18 19  1  0  0  0  0
 17 20  1  0  0  0  0
 20 21  1  0  0  0  0
 20 22  2  0  0  0  0
 14 22  1  0  0  0  0
 22 23  1  0  0  0  0
  5 23  1  0  0  0  0
 23 24  2  0  0  0  0
M  END
> <DATABASE_ID>
NP0198754

> <DATABASE_NAME>
NP-MRD

> <SMILES>
COC1=CC2=C(C(=O)C3=CC=C(CO)C(O)=C3C2=O)C(OC)=C1O

> <INCHI_IDENTIFIER>
InChI=1S/C17H14O7/c1-23-10-5-9-12(17(24-2)16(10)22)14(20)8-4-3-7(6-18)13(19)11(8)15(9)21/h3-5,18-19,22H,6H2,1-2H3

> <INCHI_KEY>
CIYBOVCTYRLLSS-UHFFFAOYSA-N

> <FORMULA>
C17H14O7

> <MOLECULAR_WEIGHT>
330.292

> <EXACT_MASS>
330.073952791

> <JCHEM_ACCEPTOR_COUNT>
7

> <JCHEM_ATOM_COUNT>
38

> <JCHEM_AVERAGE_POLARIZABILITY>
32.61054789447924

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
3

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
1

> <JCHEM_IUPAC>
2,5-dihydroxy-6-(hydroxymethyl)-1,3-dimethoxy-9,10-dihydroanthracene-9,10-dione

> <JCHEM_LOGP>
1.8788831326666666

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
3

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA>
8.64906112367043

> <JCHEM_PKA_STRONGEST_ACIDIC>
7.279093988881159

> <JCHEM_PKA_STRONGEST_BASIC>
-3.0464904704918894

> <JCHEM_POLAR_SURFACE_AREA>
113.28999999999999

> <JCHEM_REFRACTIVITY>
84.8551

> <JCHEM_ROTATABLE_BOND_COUNT>
3

> <JCHEM_RULE_OF_FIVE>
1

> <JCHEM_TRADITIONAL_IUPAC>
2,5-dihydroxy-6-(hydroxymethyl)-1,3-dimethoxyanthracene-9,10-dione

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 04-SEP-22   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   04-SEP-22         0                                  
HETATM    1  C   UNK     0      10.669   1.540   0.000  0.00  0.00           C+0
HETATM    2  O   UNK     0       9.336   2.310   0.000  0.00  0.00           O+0
HETATM    3  C   UNK     0       8.002   1.540   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0       6.668   2.310   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0       5.335   1.540   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0       5.335   0.000   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0       6.668  -0.770   0.000  0.00  0.00           C+0
HETATM    8  O   UNK     0       6.668  -2.310   0.000  0.00  0.00           O+0
HETATM    9  C   UNK     0       8.002  -3.080   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0       8.002  -0.000   0.000  0.00  0.00           C+0
HETATM   11  O   UNK     0       9.336  -0.770   0.000  0.00  0.00           O+0
HETATM   12  C   UNK     0       4.001  -0.770   0.000  0.00  0.00           C+0
HETATM   13  O   UNK     0       4.001  -2.310   0.000  0.00  0.00           O+0
HETATM   14  C   UNK     0       2.667  -0.000   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0       1.334  -0.770   0.000  0.00  0.00           C+0
HETATM   16  C   UNK     0      -0.000   0.000   0.000  0.00  0.00           C+0
HETATM   17  C   UNK     0       0.000   1.540   0.000  0.00  0.00           C+0
HETATM   18  C   UNK     0      -1.334   2.310   0.000  0.00  0.00           C+0
HETATM   19  O   UNK     0      -2.667   1.540   0.000  0.00  0.00           O+0
HETATM   20  C   UNK     0       1.334   2.310   0.000  0.00  0.00           C+0
HETATM   21  O   UNK     0       1.334   3.850   0.000  0.00  0.00           O+0
HETATM   22  C   UNK     0       2.667   1.540   0.000  0.00  0.00           C+0
HETATM   23  C   UNK     0       4.001   2.310   0.000  0.00  0.00           C+0
HETATM   24  O   UNK     0       4.001   3.850   0.000  0.00  0.00           O+0
CONECT    1    2                                                            
CONECT    2    1    3                                                       
CONECT    3    2    4   10                                                  
CONECT    4    3    5                                                       
CONECT    5    4    6   23                                                  
CONECT    6    5    7   12                                                  
CONECT    7    6    8   10                                                  
CONECT    8    7    9                                                       
CONECT    9    8                                                            
CONECT   10    7    3   11                                                  
CONECT   11   10                                                            
CONECT   12    6   13   14                                                  
CONECT   13   12                                                            
CONECT   14   12   15   22                                                  
CONECT   15   14   16                                                       
CONECT   16   15   17                                                       
CONECT   17   16   18   20                                                  
CONECT   18   17   19                                                       
CONECT   19   18                                                            
CONECT   20   17   21   22                                                  
CONECT   21   20                                                            
CONECT   22   20   14   23                                                  
CONECT   23   22    5   24                                                  
CONECT   24   23                                                            
MASTER        0    0    0    0    0    0    0    0   24    0   52    0
END

View in JSmol

Synonyms

Not Available

Chemical Formula

C₁₇H₁₄O₇

Average Mass

330.2920 Da

Monoisotopic Mass

330.07395 Da

IUPAC Name

2,5-dihydroxy-6-(hydroxymethyl)-1,3-dimethoxy-9,10-dihydroanthracene-9,10-dione

Traditional Name

2,5-dihydroxy-6-(hydroxymethyl)-1,3-dimethoxyanthracene-9,10-dione

CAS Registry Number

Not Available

SMILES

COC1=CC2=C(C(=O)C3=CC=C(CO)C(O)=C3C2=O)C(OC)=C1O

InChI Identifier

InChI=1S/C17H14O7/c1-23-10-5-9-12(17(24-2)16(10)22)14(20)8-4-3-7(6-18)13(19)11(8)15(9)21/h3-5,18-19,22H,6H2,1-2H3

InChI Key

CIYBOVCTYRLLSS-UHFFFAOYSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Not Available

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as hydroxyanthraquinones. Hydroxyanthraquinones are compounds containing a hydroxyanthraquinone moiety, which consists of an anthracene bearing a quinone, and hydroxyl group.

Kingdom

Super Class

Class

Sub Class

Direct Parent

Hydroxyanthraquinones

Alternative Parents

Substituents

Hydroxyanthraquinone
Anisole
Phenol ether
Aryl ketone
1-hydroxy-4-unsubstituted benzenoid
Alkyl aryl ether
Phenol
Vinylogous acid
Ketone
Ether
Aromatic alcohol
Alcohol
Organooxygen compound
Hydrocarbon derivative
Organic oxide
Organic oxygen compound
Primary alcohol
Aromatic homopolycyclic compound

Molecular Framework

Aromatic homopolycyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	1.88	ChemAxon
pKa (Strongest Acidic)	7.28	ChemAxon
pKa (Strongest Basic)	-3	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	7	ChemAxon
Hydrogen Donor Count	3	ChemAxon
Polar Surface Area	113.29 Å²	ChemAxon
Rotatable Bond Count	3	ChemAxon
Refractivity	84.86 m³·mol⁻¹	ChemAxon
Polarizability	32.61 Å³	ChemAxon
Number of Rings	3	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	Yes	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

8791760

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

10616395

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

LOTUS database [Link]

Showing NP-Card for 2,5-dihydroxy-6-(hydroxymethyl)-1,3-dimethoxyanthracene-9,10-dione (NP0198754)

MOL for NP0198754 (2,5-dihydroxy-6-(hydroxymethyl)-1,3-dimethoxyanthracene-9,10-dione)

3D MOL for NP0198754 (2,5-dihydroxy-6-(hydroxymethyl)-1,3-dimethoxyanthracene-9,10-dione)

3D SDF for NP0198754 (2,5-dihydroxy-6-(hydroxymethyl)-1,3-dimethoxyanthracene-9,10-dione)

3D-SDF for NP0198754 (2,5-dihydroxy-6-(hydroxymethyl)-1,3-dimethoxyanthracene-9,10-dione)

PDB for NP0198754 (2,5-dihydroxy-6-(hydroxymethyl)-1,3-dimethoxyanthracene-9,10-dione)

3D PDB for NP0198754 (2,5-dihydroxy-6-(hydroxymethyl)-1,3-dimethoxyanthracene-9,10-dione)

SMILES for NP0198754 (2,5-dihydroxy-6-(hydroxymethyl)-1,3-dimethoxyanthracene-9,10-dione)

INCHI for NP0198754 (2,5-dihydroxy-6-(hydroxymethyl)-1,3-dimethoxyanthracene-9,10-dione)

Structure for NP0198754 (2,5-dihydroxy-6-(hydroxymethyl)-1,3-dimethoxyanthracene-9,10-dione)

3D Structure for NP0198754 (2,5-dihydroxy-6-(hydroxymethyl)-1,3-dimethoxyanthracene-9,10-dione)