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Record Information
Version1.0
Created at2022-09-04 17:14:36 UTC
Updated at2022-09-04 17:14:36 UTC
NP-MRD IDNP0198739
Secondary Accession NumbersNone
Natural Product Identification
Common Name[(1r,2r,3s,4s,5r,6s,8r,9r,10s,13s,16s,17s,18s)-8,9-dihydroxy-4,6,16,18-tetramethyl-11-azahexacyclo[7.7.2.1²,⁵.0¹,¹⁰.0³,⁸.0¹³,¹⁷]nonadec-11-en-13-yl]methyl 2-aminobenzoate
DescriptionPacifidine belongs to the class of organic compounds known as benzoic acid esters. These are ester derivatives of benzoic acid. [(1r,2r,3s,4s,5r,6s,8r,9r,10s,13s,16s,17s,18s)-8,9-dihydroxy-4,6,16,18-tetramethyl-11-azahexacyclo[7.7.2.1²,⁵.0¹,¹⁰.0³,⁸.0¹³,¹⁷]nonadec-11-en-13-yl]methyl 2-aminobenzoate is found in Delphinium elatum. Based on a literature review very few articles have been published on Pacifidine.
Structure
Thumb
SynonymsNot Available
Chemical FormulaC30H40N2O4
Average Mass492.6600 Da
Monoisotopic Mass492.29881 Da
IUPAC Name[(1R,2R,3S,4S,5R,6S,8R,9R,10S,13S,16S,17S,18S)-8,9-dihydroxy-4,6,16,18-tetramethyl-11-azahexacyclo[7.7.2.1^{2,5}.0^{1,10}.0^{3,8}.0^{13,17}]nonadec-11-en-13-yl]methyl 2-aminobenzoate
Traditional Name[(1R,2R,3S,4S,5R,6S,8R,9R,10S,13S,16S,17S,18S)-8,9-dihydroxy-4,6,16,18-tetramethyl-11-azahexacyclo[7.7.2.1^{2,5}.0^{1,10}.0^{3,8}.0^{13,17}]nonadec-11-en-13-yl]methyl 2-aminobenzoate
CAS Registry NumberNot Available
SMILES
C[C@H]1[C@@H]2C[C@@H]3[C@H]1[C@](O)(C[C@@H]2C)[C@@]1(O)[C@@H](C)[C@H]2[C@]33[C@@H]1N=C[C@]2(COC(=O)C1=CC=CC=C1N)CC[C@@H]3C
InChI Identifier
InChI=1S/C30H40N2O4/c1-15-12-28(34)23-17(3)20(15)11-21(23)29-16(2)9-10-27(13-32-26(29)30(28,35)18(4)24(27)29)14-36-25(33)19-7-5-6-8-22(19)31/h5-8,13,15-18,20-21,23-24,26,34-35H,9-12,14,31H2,1-4H3/t15-,16-,17-,18-,20+,21+,23-,24+,26-,27-,28+,29+,30+/m0/s1
InChI KeyTXROOAIWZBNYPU-FJLRKGBNSA-N
Experimental Spectra
Not Available
Predicted Spectra
Spectrum TypeDescriptionDepositor IDDepositor OrganizationDepositorDeposition DateView
1D NMR13C NMR Spectrum (1D, 25 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 100 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 252 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 1000 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 50 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 200 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 75 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 300 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 101 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 400 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 126 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 500 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 151 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 600 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 176 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 700 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 201 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 800 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 226 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 900 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
Chemical Shift Submissions
Not Available
Species
Species of Origin
Species NameSourceReference
Delphinium elatumLOTUS Database
Chemical Taxonomy
Description Belongs to the class of organic compounds known as benzoic acid esters. These are ester derivatives of benzoic acid.
KingdomOrganic compounds
Super ClassBenzenoids
ClassBenzene and substituted derivatives
Sub ClassBenzoic acids and derivatives
Direct ParentBenzoic acid esters
Alternative Parents
Substituents
  • Benzoate ester
  • Aminobenzoic acid or derivatives
  • Aniline or substituted anilines
  • Benzoyl
  • Tetrahydropyridine
  • Azepine
  • Vinylogous amide
  • Tertiary alcohol
  • Cyclic alcohol
  • Carboxylic acid ester
  • Amino acid or derivatives
  • 1,2-diol
  • Azacycle
  • Organoheterocyclic compound
  • Organic 1,3-dipolar compound
  • Propargyl-type 1,3-dipolar organic compound
  • Monocarboxylic acid or derivatives
  • Carboxylic acid derivative
  • Organic nitrogen compound
  • Organic oxygen compound
  • Organopnictogen compound
  • Organic oxide
  • Hydrocarbon derivative
  • Primary amine
  • Organooxygen compound
  • Organonitrogen compound
  • Imine
  • Amine
  • Alcohol
  • Aromatic heteropolycyclic compound
Molecular FrameworkAromatic heteropolycyclic compounds
External DescriptorsNot Available
Physical Properties
StateNot Available
Experimental Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Predicted Properties
PropertyValueSource
logP3.93ChemAxon
pKa (Strongest Acidic)12.65ChemAxon
pKa (Strongest Basic)5.64ChemAxon
Physiological Charge0ChemAxon
Hydrogen Acceptor Count5ChemAxon
Hydrogen Donor Count3ChemAxon
Polar Surface Area105.14 ŲChemAxon
Rotatable Bond Count4ChemAxon
Refractivity137.62 m³·mol⁻¹ChemAxon
Polarizability54.89 ųChemAxon
Number of Rings7ChemAxon
BioavailabilityYesChemAxon
Rule of FiveYesChemAxon
Ghose FilterNoChemAxon
Veber's RuleNoChemAxon
MDDR-like RuleNoChemAxon
HMDB IDNot Available
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FoodDB IDNot Available
KNApSAcK IDNot Available
Chemspider IDNot Available
KEGG Compound IDNot Available
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem Compound101630878
PDB IDNot Available
ChEBI IDNot Available
Good Scents IDNot Available
References
General References
  1. LOTUS database [Link]