NP-MRD: Showing NP-Card for 6-[(6-{[(11z,13z)-4-(acetyloxy)-10-{[5-(dimethylamino)-6-methyloxan-2-yl]oxy}-5-methoxy-9,16-dimethyl-2-oxo-7-(2-oxoethyl)-1-oxacyclohexadeca-11,13-dien-6-yl]oxy}-4-(dimethylamino)-5-hydroxy-2-methyloxan-3-yl)oxy]-4-hydroxy-2,4-dimethyloxan-3-yl butanoate (NP0197013)

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Record Information

Version

2.0

Created at

2022-09-04 15:11:55 UTC

Updated at

2022-09-04 15:11:55 UTC

NP-MRD ID

NP0197013

Secondary Accession Numbers

None

Natural Product Identification

Common Name

6-[(6-{[(11z,13z)-4-(acetyloxy)-10-{[5-(dimethylamino)-6-methyloxan-2-yl]oxy}-5-methoxy-9,16-dimethyl-2-oxo-7-(2-oxoethyl)-1-oxacyclohexadeca-11,13-dien-6-yl]oxy}-4-(dimethylamino)-5-hydroxy-2-methyloxan-3-yl)oxy]-4-hydroxy-2,4-dimethyloxan-3-yl butanoate

Description

Shengjimycin B2alpha, also known as shengjimycin b2α, belongs to the class of organic compounds known as aminoglycosides. These are molecules or a portion of a molecule composed of amino-modified sugars. 6-[(6-{[(11z,13z)-4-(acetyloxy)-10-{[5-(dimethylamino)-6-methyloxan-2-yl]oxy}-5-methoxy-9,16-dimethyl-2-oxo-7-(2-oxoethyl)-1-oxacyclohexadeca-11,13-dien-6-yl]oxy}-4-(dimethylamino)-5-hydroxy-2-methyloxan-3-yl)oxy]-4-hydroxy-2,4-dimethyloxan-3-yl butanoate is found in Streptomyces spiramyceticus. Based on a literature review very few articles have been published on Shengjimycin B2alpha.

Structure

MOL 3D MOL SDF PDB SMILES InChI


  Mrv1652309042217112D          

 67 70  0  0  0  0            999 V2000
   -0.5800    5.1855    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
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   -2.7234    3.9480    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0089    2.7105    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7234    2.2980    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7234    1.4730    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0089    1.0605    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.4378    1.0605    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -4.1523    1.4730    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.8668    1.0605    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -4.8668    0.2355    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.1523   -0.1770    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.4378    0.2355    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.1523   -1.0020    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
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   -4.1106   -1.3772    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.7949   -0.6150    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9769   -0.5074    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8684   -1.6669    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0452   -1.6129    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
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   -1.2640   -1.8781    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
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   -2.5972   -5.8055    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
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   -5.1604   -4.4700    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
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   -6.2957    0.2355    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
   -6.2957    1.0605    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -7.0102   -0.1770    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
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   -3.8252    3.4389    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.0505    3.4389    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  1  0  0  0  0
  3  4  1  0  0  0  0
  4  5  2  0  0  0  0
  4  6  1  0  0  0  0
  6  7  1  0  0  0  0
  7  8  1  0  0  0  0
  8  9  1  0  0  0  0
  8 10  1  0  0  0  0
 10 11  1  0  0  0  0
 11 12  1  0  0  0  0
 12 13  1  0  0  0  0
 13 14  1  0  0  0  0
 14 15  1  0  0  0  0
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 36 38  1  0  0  0  0
 29 38  1  0  0  0  0
 27 39  1  0  0  0  0
 39 40  2  0  0  0  0
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 19 55  1  0  0  0  0
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 17 58  1  0  0  0  0
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 13 60  1  0  0  0  0
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 11 64  1  0  0  0  0
 64 65  1  0  0  0  0
  7 65  1  0  0  0  0
 65 66  1  0  0  0  0
 65 67  1  0  0  0  0
M  END

     RDKit          3D

149152  0  0  0  0  0  0  0  0999 V2000
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M  END


  Mrv1652309042217112D          

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> <DATABASE_ID>
NP0197013

> <DATABASE_NAME>
NP-MRD

> <SMILES>
CCCC(=O)OC1C(C)OC(CC1(C)O)OC1C(C)OC(OC2C(CC=O)CC(C)C(OC3CCC(C(C)O3)N(C)C)\C=C/C=C\CC(C)OC(=O)CC(OC(C)=O)C2OC)C(O)C1N(C)C

> <INCHI_IDENTIFIER>
InChI=1S/C49H82N2O16/c1-14-18-38(54)65-47-32(6)61-41(27-49(47,8)57)66-44-31(5)62-48(43(56)42(44)51(11)12)67-45-34(23-24-52)25-28(2)36(64-40-22-21-35(50(9)10)30(4)60-40)20-17-15-16-19-29(3)59-39(55)26-37(46(45)58-13)63-33(7)53/h15-17,20,24,28-32,34-37,40-48,56-57H,14,18-19,21-23,25-27H2,1-13H3/b16-15-,20-17-

> <INCHI_KEY>
FJNJQYYEDQVPSJ-WFLLNITGSA-N

> <FORMULA>
C49H82N2O16

> <MOLECULAR_WEIGHT>
955.193

> <EXACT_MASS>
954.566434568

> <JCHEM_ACCEPTOR_COUNT>
15

> <JCHEM_ATOM_COUNT>
149

> <JCHEM_AVERAGE_POLARIZABILITY>
103.92656544743875

> <JCHEM_BIOAVAILABILITY>
0

> <JCHEM_DONOR_COUNT>
2

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
6-[(6-{[(11Z,13Z)-4-(acetyloxy)-10-{[5-(dimethylamino)-6-methyloxan-2-yl]oxy}-5-methoxy-9,16-dimethyl-2-oxo-7-(2-oxoethyl)-1-oxacyclohexadeca-11,13-dien-6-yl]oxy}-4-(dimethylamino)-5-hydroxy-2-methyloxan-3-yl)oxy]-4-hydroxy-2,4-dimethyloxan-3-yl butanoate

> <JCHEM_LOGP>
4.523468711666671

> <JCHEM_MDDR_LIKE_RULE>
1

> <JCHEM_NUMBER_OF_RINGS>
4

> <JCHEM_PHYSIOLOGICAL_CHARGE>
2

> <JCHEM_PKA>
13.820573885430818

> <JCHEM_PKA_STRONGEST_ACIDIC>
12.70968950592409

> <JCHEM_PKA_STRONGEST_BASIC>
9.27962419729706

> <JCHEM_POLAR_SURFACE_AREA>
207.51999999999992

> <JCHEM_REFRACTIVITY>
246.77670000000003

> <JCHEM_ROTATABLE_BOND_COUNT>
17

> <JCHEM_RULE_OF_FIVE>
0

> <JCHEM_TRADITIONAL_IUPAC>
6-[(6-{[(11Z,13Z)-4-(acetyloxy)-10-{[5-(dimethylamino)-6-methyloxan-2-yl]oxy}-5-methoxy-9,16-dimethyl-2-oxo-7-(2-oxoethyl)-1-oxacyclohexadeca-11,13-dien-6-yl]oxy}-4-(dimethylamino)-5-hydroxy-2-methyloxan-3-yl)oxy]-4-hydroxy-2,4-dimethyloxan-3-yl butanoate

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 04-SEP-22   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   04-SEP-22         0                                  
HETATM    1  C   UNK     0      -1.083   9.680   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0      -2.416   8.910   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0      -2.416   7.370   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0      -3.750   6.600   0.000  0.00  0.00           C+0
HETATM    5  O   UNK     0      -5.084   7.370   0.000  0.00  0.00           O+0
HETATM    6  O   UNK     0      -3.750   5.060   0.000  0.00  0.00           O+0
HETATM    7  C   UNK     0      -5.084   4.290   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0      -5.084   2.750   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0      -3.750   1.980   0.000  0.00  0.00           C+0
HETATM   10  O   UNK     0      -6.417   1.980   0.000  0.00  0.00           O+0
HETATM   11  C   UNK     0      -7.751   2.750   0.000  0.00  0.00           C+0
HETATM   12  O   UNK     0      -9.085   1.980   0.000  0.00  0.00           O+0
HETATM   13  C   UNK     0      -9.085   0.440   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0      -7.751  -0.330   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0      -6.417   0.440   0.000  0.00  0.00           C+0
HETATM   16  O   UNK     0      -7.751  -1.870   0.000  0.00  0.00           O+0
HETATM   17  C   UNK     0      -9.085  -2.640   0.000  0.00  0.00           C+0
HETATM   18  O   UNK     0      -9.085  -4.180   0.000  0.00  0.00           O+0
HETATM   19  C   UNK     0      -7.751  -4.950   0.000  0.00  0.00           C+0
HETATM   20  C   UNK     0      -6.736  -3.793   0.000  0.00  0.00           C+0
HETATM   21  C   UNK     0      -7.673  -2.571   0.000  0.00  0.00           C+0
HETATM   22  C   UNK     0      -7.084  -1.148   0.000  0.00  0.00           C+0
HETATM   23  O   UNK     0      -5.557  -0.947   0.000  0.00  0.00           O+0
HETATM   24  C   UNK     0      -5.354  -3.111   0.000  0.00  0.00           C+0
HETATM   25  C   UNK     0      -3.818  -3.011   0.000  0.00  0.00           C+0
HETATM   26  C   UNK     0      -3.617  -1.484   0.000  0.00  0.00           C+0
HETATM   27  C   UNK     0      -2.359  -3.506   0.000  0.00  0.00           C+0
HETATM   28  O   UNK     0      -1.589  -2.172   0.000  0.00  0.00           O+0
HETATM   29  C   UNK     0      -0.049  -2.172   0.000  0.00  0.00           C+0
HETATM   30  C   UNK     0       0.721  -0.838   0.000  0.00  0.00           C+0
HETATM   31  C   UNK     0       2.261  -0.838   0.000  0.00  0.00           C+0
HETATM   32  C   UNK     0       3.031  -2.172   0.000  0.00  0.00           C+0
HETATM   33  N   UNK     0       4.571  -2.172   0.000  0.00  0.00           N+0
HETATM   34  C   UNK     0       5.341  -0.838   0.000  0.00  0.00           C+0
HETATM   35  C   UNK     0       5.341  -3.506   0.000  0.00  0.00           C+0
HETATM   36  C   UNK     0       2.261  -3.506   0.000  0.00  0.00           C+0
HETATM   37  C   UNK     0       3.031  -4.839   0.000  0.00  0.00           C+0
HETATM   38  O   UNK     0       0.721  -3.506   0.000  0.00  0.00           O+0
HETATM   39  C   UNK     0      -1.202  -4.521   0.000  0.00  0.00           C+0
HETATM   40  C   UNK     0      -0.520  -5.902   0.000  0.00  0.00           C+0
HETATM   41  C   UNK     0      -0.420  -7.439   0.000  0.00  0.00           C+0
HETATM   42  C   UNK     0      -0.915  -8.897   0.000  0.00  0.00           C+0
HETATM   43  C   UNK     0      -1.930 -10.055   0.000  0.00  0.00           C+0
HETATM   44  C   UNK     0      -3.311 -10.736   0.000  0.00  0.00           C+0
HETATM   45  C   UNK     0      -2.913 -12.224   0.000  0.00  0.00           C+0
HETATM   46  O   UNK     0      -4.848 -10.837   0.000  0.00  0.00           O+0
HETATM   47  C   UNK     0      -6.306 -10.342   0.000  0.00  0.00           C+0
HETATM   48  O   UNK     0      -7.076 -11.676   0.000  0.00  0.00           O+0
HETATM   49  C   UNK     0      -7.464  -9.327   0.000  0.00  0.00           C+0
HETATM   50  C   UNK     0      -8.145  -7.945   0.000  0.00  0.00           C+0
HETATM   51  O   UNK     0      -9.633  -8.344   0.000  0.00  0.00           O+0
HETATM   52  C   UNK     0     -10.031  -9.832   0.000  0.00  0.00           C+0
HETATM   53  C   UNK     0      -8.942 -10.920   0.000  0.00  0.00           C+0
HETATM   54  O   UNK     0     -11.519 -10.230   0.000  0.00  0.00           O+0
HETATM   55  C   UNK     0      -8.246  -6.409   0.000  0.00  0.00           C+0
HETATM   56  O   UNK     0      -9.773  -6.208   0.000  0.00  0.00           O+0
HETATM   57  C   UNK     0     -10.710  -7.429   0.000  0.00  0.00           C+0
HETATM   58  C   UNK     0     -10.418  -1.870   0.000  0.00  0.00           C+0
HETATM   59  O   UNK     0     -11.752  -2.640   0.000  0.00  0.00           O+0
HETATM   60  C   UNK     0     -10.418  -0.330   0.000  0.00  0.00           C+0
HETATM   61  N   UNK     0     -11.752   0.440   0.000  0.00  0.00           N+0
HETATM   62  C   UNK     0     -11.752   1.980   0.000  0.00  0.00           C+0
HETATM   63  C   UNK     0     -13.086  -0.330   0.000  0.00  0.00           C+0
HETATM   64  C   UNK     0      -7.751   4.290   0.000  0.00  0.00           C+0
HETATM   65  C   UNK     0      -6.417   5.060   0.000  0.00  0.00           C+0
HETATM   66  C   UNK     0      -7.140   6.419   0.000  0.00  0.00           C+0
HETATM   67  O   UNK     0      -5.694   6.419   0.000  0.00  0.00           O+0
CONECT    1    2                                                            
CONECT    2    1    3                                                       
CONECT    3    2    4                                                       
CONECT    4    3    5    6                                                  
CONECT    5    4                                                            
CONECT    6    4    7                                                       
CONECT    7    6    8   65                                                  
CONECT    8    7    9   10                                                  
CONECT    9    8                                                            
CONECT   10    8   11                                                       
CONECT   11   10   12   64                                                  
CONECT   12   11   13                                                       
CONECT   13   12   14   60                                                  
CONECT   14   13   15   16                                                  
CONECT   15   14                                                            
CONECT   16   14   17                                                       
CONECT   17   16   18   58                                                  
CONECT   18   17   19                                                       
CONECT   19   18   20   55                                                  
CONECT   20   19   21   24                                                  
CONECT   21   20   22                                                       
CONECT   22   21   23                                                       
CONECT   23   22                                                            
CONECT   24   20   25                                                       
CONECT   25   24   26   27                                                  
CONECT   26   25                                                            
CONECT   27   25   28   39                                                  
CONECT   28   27   29                                                       
CONECT   29   28   30   38                                                  
CONECT   30   29   31                                                       
CONECT   31   30   32                                                       
CONECT   32   31   33   36                                                  
CONECT   33   32   34   35                                                  
CONECT   34   33                                                            
CONECT   35   33                                                            
CONECT   36   32   37   38                                                  
CONECT   37   36                                                            
CONECT   38   36   29                                                       
CONECT   39   27   40                                                       
CONECT   40   39   41                                                       
CONECT   41   40   42                                                       
CONECT   42   41   43                                                       
CONECT   43   42   44                                                       
CONECT   44   43   45   46                                                  
CONECT   45   44                                                            
CONECT   46   44   47                                                       
CONECT   47   46   48   49                                                  
CONECT   48   47                                                            
CONECT   49   47   50                                                       
CONECT   50   49   51   55                                                  
CONECT   51   50   52                                                       
CONECT   52   51   53   54                                                  
CONECT   53   52                                                            
CONECT   54   52                                                            
CONECT   55   50   19   56                                                  
CONECT   56   55   57                                                       
CONECT   57   56                                                            
CONECT   58   17   59   60                                                  
CONECT   59   58                                                            
CONECT   60   58   13   61                                                  
CONECT   61   60   62   63                                                  
CONECT   62   61                                                            
CONECT   63   61                                                            
CONECT   64   11   65                                                       
CONECT   65   64    7   66   67                                             
CONECT   66   65                                                            
CONECT   67   65                                                            
MASTER        0    0    0    0    0    0    0    0   67    0  140    0
END

View in JSmol

Synonyms

Value	Source
Shengjimycin b2a	Generator
Shengjimycin b2α	Generator

Chemical Formula

C₄₉H₈₂N₂O₁₆

Average Mass

955.1930 Da

Monoisotopic Mass

954.56643 Da

IUPAC Name

6-[(6-{[(11Z,13Z)-4-(acetyloxy)-10-{[5-(dimethylamino)-6-methyloxan-2-yl]oxy}-5-methoxy-9,16-dimethyl-2-oxo-7-(2-oxoethyl)-1-oxacyclohexadeca-11,13-dien-6-yl]oxy}-4-(dimethylamino)-5-hydroxy-2-methyloxan-3-yl)oxy]-4-hydroxy-2,4-dimethyloxan-3-yl butanoate

Traditional Name

CAS Registry Number

Not Available

SMILES

CCCC(=O)OC1C(C)OC(CC1(C)O)OC1C(C)OC(OC2C(CC=O)CC(C)C(OC3CCC(C(C)O3)N(C)C)\C=C/C=C\CC(C)OC(=O)CC(OC(C)=O)C2OC)C(O)C1N(C)C

InChI Identifier

InChI=1S/C49H82N2O16/c1-14-18-38(54)65-47-32(6)61-41(27-49(47,8)57)66-44-31(5)62-48(43(56)42(44)51(11)12)67-45-34(23-24-52)25-28(2)36(64-40-22-21-35(50(9)10)30(4)60-40)20-17-15-16-19-29(3)59-39(55)26-37(46(45)58-13)63-33(7)53/h15-17,20,24,28-32,34-37,40-48,56-57H,14,18-19,21-23,25-27H2,1-13H3/b16-15-,20-17-

InChI Key

FJNJQYYEDQVPSJ-WFLLNITGSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Streptomyces spiramyceticus	LOTUS Database	35616633

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as aminoglycosides. These are molecules or a portion of a molecule composed of amino-modified sugars.

Kingdom

Organic compounds

Super Class

Organic oxygen compounds

Class

Organooxygen compounds

Sub Class

Carbohydrates and carbohydrate conjugates

Direct Parent

Aminoglycosides

Alternative Parents

Substituents

Aminoglycoside core
Macrolide
O-glycosyl compound
Glycosyl compound
Disaccharide
Tricarboxylic acid or derivatives
Fatty acid ester
Fatty acyl
Oxane
Tertiary alcohol
Alpha-hydrogen aldehyde
Tertiary aliphatic amine
Tertiary amine
Secondary alcohol
Lactone
Carboxylic acid ester
Amino acid or derivatives
1,2-aminoalcohol
Oxacycle
Organoheterocyclic compound
Ether
Dialkyl ether
Carboxylic acid derivative
Acetal
Organic nitrogen compound
Organopnictogen compound
Organic oxide
Hydrocarbon derivative
Organonitrogen compound
Carbonyl group
Amine
Aldehyde
Alcohol
Aliphatic heteromonocyclic compound

Molecular Framework

Aliphatic heteromonocyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	4.52	ChemAxon
pKa (Strongest Acidic)	12.71	ChemAxon
pKa (Strongest Basic)	9.28	ChemAxon
Physiological Charge	2	ChemAxon
Hydrogen Acceptor Count	15	ChemAxon
Hydrogen Donor Count	2	ChemAxon
Polar Surface Area	207.52 Å²	ChemAxon
Rotatable Bond Count	17	ChemAxon
Refractivity	246.78 m³·mol⁻¹	ChemAxon
Polarizability	103.93 Å³	ChemAxon
Number of Rings	4	ChemAxon
Bioavailability	No	ChemAxon
Rule of Five	No	ChemAxon
Ghose Filter	No	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	Yes	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

78444043

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

139584886

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

LOTUS database [Link]

Showing NP-Card for 6-[(6-{[(11z,13z)-4-(acetyloxy)-10-{[5-(dimethylamino)-6-methyloxan-2-yl]oxy}-5-methoxy-9,16-dimethyl-2-oxo-7-(2-oxoethyl)-1-oxacyclohexadeca-11,13-dien-6-yl]oxy}-4-(dimethylamino)-5-hydroxy-2-methyloxan-3-yl)oxy]-4-hydroxy-2,4-dimethyloxan-3-yl butanoate (NP0197013)

MOL for NP0197013 (6-[(6-{[(11z,13z)-4-(acetyloxy)-10-{[5-(dimethylamino)-6-methyloxan-2-yl]oxy}-5-methoxy-9,16-dimethyl-2-oxo-7-(2-oxoethyl)-1-oxacyclohexadeca-11,13-dien-6-yl]oxy}-4-(dimethylamino)-5-hydroxy-2-methyloxan-3-yl)oxy]-4-hydroxy-2,4-dimethyloxan-3-yl butanoate)

3D MOL for NP0197013 (6-[(6-{[(11z,13z)-4-(acetyloxy)-10-{[5-(dimethylamino)-6-methyloxan-2-yl]oxy}-5-methoxy-9,16-dimethyl-2-oxo-7-(2-oxoethyl)-1-oxacyclohexadeca-11,13-dien-6-yl]oxy}-4-(dimethylamino)-5-hydroxy-2-methyloxan-3-yl)oxy]-4-hydroxy-2,4-dimethyloxan-3-yl butanoate)

3D SDF for NP0197013 (6-[(6-{[(11z,13z)-4-(acetyloxy)-10-{[5-(dimethylamino)-6-methyloxan-2-yl]oxy}-5-methoxy-9,16-dimethyl-2-oxo-7-(2-oxoethyl)-1-oxacyclohexadeca-11,13-dien-6-yl]oxy}-4-(dimethylamino)-5-hydroxy-2-methyloxan-3-yl)oxy]-4-hydroxy-2,4-dimethyloxan-3-yl butanoate)

3D-SDF for NP0197013 (6-[(6-{[(11z,13z)-4-(acetyloxy)-10-{[5-(dimethylamino)-6-methyloxan-2-yl]oxy}-5-methoxy-9,16-dimethyl-2-oxo-7-(2-oxoethyl)-1-oxacyclohexadeca-11,13-dien-6-yl]oxy}-4-(dimethylamino)-5-hydroxy-2-methyloxan-3-yl)oxy]-4-hydroxy-2,4-dimethyloxan-3-yl butanoate)

PDB for NP0197013 (6-[(6-{[(11z,13z)-4-(acetyloxy)-10-{[5-(dimethylamino)-6-methyloxan-2-yl]oxy}-5-methoxy-9,16-dimethyl-2-oxo-7-(2-oxoethyl)-1-oxacyclohexadeca-11,13-dien-6-yl]oxy}-4-(dimethylamino)-5-hydroxy-2-methyloxan-3-yl)oxy]-4-hydroxy-2,4-dimethyloxan-3-yl butanoate)

3D PDB for NP0197013 (6-[(6-{[(11z,13z)-4-(acetyloxy)-10-{[5-(dimethylamino)-6-methyloxan-2-yl]oxy}-5-methoxy-9,16-dimethyl-2-oxo-7-(2-oxoethyl)-1-oxacyclohexadeca-11,13-dien-6-yl]oxy}-4-(dimethylamino)-5-hydroxy-2-methyloxan-3-yl)oxy]-4-hydroxy-2,4-dimethyloxan-3-yl butanoate)

SMILES for NP0197013 (6-[(6-{[(11z,13z)-4-(acetyloxy)-10-{[5-(dimethylamino)-6-methyloxan-2-yl]oxy}-5-methoxy-9,16-dimethyl-2-oxo-7-(2-oxoethyl)-1-oxacyclohexadeca-11,13-dien-6-yl]oxy}-4-(dimethylamino)-5-hydroxy-2-methyloxan-3-yl)oxy]-4-hydroxy-2,4-dimethyloxan-3-yl butanoate)

INCHI for NP0197013 (6-[(6-{[(11z,13z)-4-(acetyloxy)-10-{[5-(dimethylamino)-6-methyloxan-2-yl]oxy}-5-methoxy-9,16-dimethyl-2-oxo-7-(2-oxoethyl)-1-oxacyclohexadeca-11,13-dien-6-yl]oxy}-4-(dimethylamino)-5-hydroxy-2-methyloxan-3-yl)oxy]-4-hydroxy-2,4-dimethyloxan-3-yl butanoate)

Structure for NP0197013 (6-[(6-{[(11z,13z)-4-(acetyloxy)-10-{[5-(dimethylamino)-6-methyloxan-2-yl]oxy}-5-methoxy-9,16-dimethyl-2-oxo-7-(2-oxoethyl)-1-oxacyclohexadeca-11,13-dien-6-yl]oxy}-4-(dimethylamino)-5-hydroxy-2-methyloxan-3-yl)oxy]-4-hydroxy-2,4-dimethyloxan-3-yl butanoate)

3D Structure for NP0197013 (6-[(6-{[(11z,13z)-4-(acetyloxy)-10-{[5-(dimethylamino)-6-methyloxan-2-yl]oxy}-5-methoxy-9,16-dimethyl-2-oxo-7-(2-oxoethyl)-1-oxacyclohexadeca-11,13-dien-6-yl]oxy}-4-(dimethylamino)-5-hydroxy-2-methyloxan-3-yl)oxy]-4-hydroxy-2,4-dimethyloxan-3-yl butanoate)