NP-MRD: Showing NP-Card for (1r,2r,3r,4s)-1-(acetyloxy)-2,4,9-trihydroxy-2-methyl-5,10-dioxo-11-(λ⁵-diazynylidene)-1h,3h,4h-benzo[b]fluoren-3-yl acetate (NP0196830)

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Record Information

Version

2.0

Created at

2022-09-04 14:58:53 UTC

Updated at

2022-09-04 14:58:53 UTC

NP-MRD ID

NP0196830

Secondary Accession Numbers

None

Natural Product Identification

Common Name

(1r,2r,3r,4s)-1-(acetyloxy)-2,4,9-trihydroxy-2-methyl-5,10-dioxo-11-(λ⁵-diazynylidene)-1h,3h,4h-benzo[b]fluoren-3-yl acetate

Description

Kinamycin D, also known as FL-120D, belongs to the class of organic compounds known as naphthols and derivatives. These are naphthalene derivatives carrying one or more hydroxyl (-OH) groups at any ring position. Kinamycin D is a primary metabolite. Primary metabolites are metabolically or physiologically essential metabolites. They are directly involved in an organism’s growth, development or reproduction. (1r,2r,3r,4s)-1-(acetyloxy)-2,4,9-trihydroxy-2-methyl-5,10-dioxo-11-(λ⁵-diazynylidene)-1h,3h,4h-benzo[b]fluoren-3-yl acetate is found in Streptomyces chattanoogensis and Streptomyces murayamaensis. (1r,2r,3r,4s)-1-(acetyloxy)-2,4,9-trihydroxy-2-methyl-5,10-dioxo-11-(λ⁵-diazynylidene)-1h,3h,4h-benzo[b]fluoren-3-yl acetate was first documented in 2006 (PMID: 16870443). Based on a literature review very few articles have been published on kinamycin D (PMID: 29338229).

Structure

MOL 3D MOL SDF PDB SMILES InChI


  Mrv1652309042216582D          

 33 36  0  0  1  0            999 V2000
   -0.0506   -4.1149    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.4270   -4.7877    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0831   -5.5376    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.2483   -4.7105    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.5922   -3.9606    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    2.4136   -3.8834    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.7574   -3.1335    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.5769   -3.2287    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.1960   -2.6835    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.0334   -1.8747    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.9778   -2.9471    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.5969   -2.4018    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.3787   -2.6654    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.5413   -3.4742    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.9222   -4.0195    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.0848   -4.8283    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.1404   -3.7559    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.5213   -4.3011    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.6839   -5.1099    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.7395   -4.0376    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.0205   -4.4422    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.9253   -5.2616    0.0000 N   0  3  0  0  0  0  0  0  0  0  0  0
    2.8300   -6.0811    0.0000 N   0  5  0  0  0  0  0  0  0  0  0  0
    2.2799   -2.4607    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    2.6237   -1.7108    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.4585   -2.5379    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    0.9810   -1.8652    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.3248   -1.1152    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.1462   -1.0380    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.8473   -0.4425    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.1146   -3.2878    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    0.3532   -2.9704    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.4256   -3.7416    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  2  0  0  0  0
  2  4  1  0  0  0  0
  5  4  1  1  0  0  0
  5  6  1  0  0  0  0
  6  7  2  0  0  0  0
  7  8  1  0  0  0  0
  8  9  1  0  0  0  0
  9 10  2  0  0  0  0
  9 11  1  0  0  0  0
 11 12  2  0  0  0  0
 12 13  1  0  0  0  0
 13 14  2  0  0  0  0
 14 15  1  0  0  0  0
 15 16  1  0  0  0  0
 15 17  2  0  0  0  0
 11 17  1  0  0  0  0
 17 18  1  0  0  0  0
 18 19  2  0  0  0  0
 18 20  1  0  0  0  0
  8 20  2  0  0  0  0
 20 21  1  0  0  0  0
  6 21  1  0  0  0  0
 21 22  2  0  0  0  0
 22 23  2  0  0  0  0
  7 24  1  0  0  0  0
 24 25  1  1  0  0  0
 24 26  1  0  0  0  0
 26 27  1  6  0  0  0
 27 28  1  0  0  0  0
 28 29  1  0  0  0  0
 28 30  2  0  0  0  0
 26 31  1  0  0  0  0
  5 31  1  0  0  0  0
 31 32  1  6  0  0  0
 31 33  1  1  0  0  0
M  CHG  2  22   1  23  -1
M  END

     RDKit          3D

 51 54  0  0  0  0  0  0  0  0999 V2000
   -2.9786    4.6543   -0.2951 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.6238    3.4566    0.5421 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7445    3.4842    1.7975 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1558    2.2880   -0.0225 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8081    1.1338    0.7196 C   0  0  2  0  0  0  0  0  0  0  0  0
   -0.3326    0.9357    0.5236 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.2670   -0.2994    0.7553 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.5962   -0.1498    0.4918 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.6362   -1.0308    0.5547 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.4355   -2.2212    0.9091 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.9455   -0.6855    0.2420 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.9606   -1.6265    0.3252 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.2346   -1.2727    0.0162 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.4974    0.0041   -0.3719 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.4773    0.9768   -0.4628 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.7836    2.2334   -0.8527 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.1704    0.6298   -0.1501 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.1324    1.5314   -0.2188 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.3037    2.7082   -0.5645 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.8550    1.0755    0.1183 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.6818    1.7803    0.1257 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.5271    3.0056   -0.1782 N   0  0  0  0  0  4  0  0  0  0  0  0
    0.3120    3.9933   -0.9096 N   0  0  0  0  0  2  0  0  0  0  0  0
   -0.6418   -1.3708    1.1963 C   0  0  2  0  0  0  0  0  0  0  0  0
   -0.1369   -2.6423    1.1257 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8469   -1.3341    0.2455 C   0  0  1  0  0  0  0  0  0  0  0  0
   -2.6512   -2.4494    0.6007 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9114   -3.4929   -0.2587 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.7451   -4.6698    0.0799 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4011   -3.4356   -1.4123 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.6139   -0.0630    0.3518 C   0  0  1  0  0  0  0  0  0  0  0  0
   -3.7691   -0.3011    1.3275 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.2065    0.1772   -0.9093 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1098    5.3423   -0.3824 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.4167    4.3756   -1.2570 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.7514    5.2196    0.2926 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9681    1.3082    1.8246 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.7090   -2.6262    0.6367 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.0460   -2.0098    0.0786 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.5087    0.3261   -0.6283 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.3694    3.0796   -1.0111 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0413   -1.2111    2.2244 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1329   -2.9591    0.1840 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4695   -1.4235   -0.7956 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.7849   -4.5732   -0.3057 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.2305   -5.5645   -0.3336 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.8387   -4.8292    1.1720 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.7487   -0.2040    0.8424 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.7172   -1.3116    1.7809 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.6463    0.4107    2.1912 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.0260   -0.3733   -0.9762 H   0  0  0  0  0  0  0  0  0  0  0  0
 29 28  1  0
 28 30  2  0
 28 27  1  0
 27 26  1  0
 26 24  1  0
 24 25  1  0
 24  7  1  0
  7  6  2  0
  6  5  1  0
  5  4  1  0
  4  2  1  0
  2  1  1  0
  2  3  2  0
  5 31  1  0
 31 32  1  0
 31 33  1  6
  6 21  1  0
 21 22  2  0
 22 23  2  0
 21 20  1  0
 20  8  2  0
  8  9  1  0
  9 10  2  0
  9 11  1  0
 11 12  2  0
 12 13  1  0
 13 14  2  0
 14 15  1  0
 15 16  1  0
 15 17  2  0
 17 18  1  0
 18 19  2  0
 31 26  1  0
 18 20  1  0
  8  7  1  0
 17 11  1  0
 29 45  1  0
 29 46  1  0
 29 47  1  0
 26 44  1  6
 24 42  1  1
 25 43  1  0
  5 37  1  1
  1 34  1  0
  1 35  1  0
  1 36  1  0
 32 48  1  0
 32 49  1  0
 32 50  1  0
 33 51  1  0
 12 38  1  0
 13 39  1  0
 14 40  1  0
 16 41  1  0
M  CHG  2  22   1  23  -1
M  END


  Mrv1652309042216582D          

 33 36  0  0  1  0            999 V2000
   -0.0506   -4.1149    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.4270   -4.7877    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0831   -5.5376    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.2483   -4.7105    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.5922   -3.9606    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    2.4136   -3.8834    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.7574   -3.1335    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.5769   -3.2287    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.1960   -2.6835    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.0334   -1.8747    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.9778   -2.9471    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.5969   -2.4018    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.3787   -2.6654    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.5413   -3.4742    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.9222   -4.0195    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.0848   -4.8283    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.1404   -3.7559    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.5213   -4.3011    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.6839   -5.1099    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.7395   -4.0376    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.0205   -4.4422    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.9253   -5.2616    0.0000 N   0  3  0  0  0  0  0  0  0  0  0  0
    2.8300   -6.0811    0.0000 N   0  5  0  0  0  0  0  0  0  0  0  0
    2.2799   -2.4607    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    2.6237   -1.7108    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.4585   -2.5379    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    0.9810   -1.8652    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.3248   -1.1152    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.1462   -1.0380    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.8473   -0.4425    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.1146   -3.2878    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    0.3532   -2.9704    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.4256   -3.7416    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  2  0  0  0  0
  2  4  1  0  0  0  0
  5  4  1  1  0  0  0
  5  6  1  0  0  0  0
  6  7  2  0  0  0  0
  7  8  1  0  0  0  0
  8  9  1  0  0  0  0
  9 10  2  0  0  0  0
  9 11  1  0  0  0  0
 11 12  2  0  0  0  0
 12 13  1  0  0  0  0
 13 14  2  0  0  0  0
 14 15  1  0  0  0  0
 15 16  1  0  0  0  0
 15 17  2  0  0  0  0
 11 17  1  0  0  0  0
 17 18  1  0  0  0  0
 18 19  2  0  0  0  0
 18 20  1  0  0  0  0
  8 20  2  0  0  0  0
 20 21  1  0  0  0  0
  6 21  1  0  0  0  0
 21 22  2  0  0  0  0
 22 23  2  0  0  0  0
  7 24  1  0  0  0  0
 24 25  1  1  0  0  0
 24 26  1  0  0  0  0
 26 27  1  6  0  0  0
 27 28  1  0  0  0  0
 28 29  1  0  0  0  0
 28 30  2  0  0  0  0
 26 31  1  0  0  0  0
  5 31  1  0  0  0  0
 31 32  1  6  0  0  0
 31 33  1  1  0  0  0
M  CHG  2  22   1  23  -1
M  END
> <DATABASE_ID>
NP0196830

> <DATABASE_NAME>
NP-MRD

> <SMILES>
CC(=O)O[C@@H]1[C@@H](O)C2=C([C@@H](OC(C)=O)[C@@]1(C)O)C(=[N+]=[N-])C1=C2C(=O)C2=CC=CC(O)=C2C1=O

> <INCHI_IDENTIFIER>
InChI=1S/C22H18N2O9/c1-7(25)32-20-15-13(19(30)21(22(20,3)31)33-8(2)26)12-14(16(15)24-23)18(29)11-9(17(12)28)5-4-6-10(11)27/h4-6,19-21,27,30-31H,1-3H3/t19-,20+,21+,22+/m0/s1

> <INCHI_KEY>
KPVVXTRWIKTJBS-DXBBTUNJSA-N

> <FORMULA>
C22H18N2O9

> <MOLECULAR_WEIGHT>
454.391

> <EXACT_MASS>
454.101230168

> <JCHEM_ACCEPTOR_COUNT>
8

> <JCHEM_ATOM_COUNT>
51

> <JCHEM_AVERAGE_POLARIZABILITY>
43.08744200405194

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
3

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
(1R,2R,3R,4S)-1-(acetyloxy)-2,4,9-trihydroxy-11-(-lambda5-diazynylidene)-2-methyl-5,10-dioxo-1H,2H,3H,4H,5H,10H,11H-benzo[b]fluoren-3-yl acetate

> <JCHEM_LOGP>
-1.6375678845426118

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
4

> <JCHEM_PHYSIOLOGICAL_CHARGE>
1

> <JCHEM_PKA>
8.991896219513011

> <JCHEM_PKA_STRONGEST_ACIDIC>
8.05963508330524

> <JCHEM_PKA_STRONGEST_BASIC>
-3.5403904622124003

> <JCHEM_POLAR_SURFACE_AREA>
164.5

> <JCHEM_REFRACTIVITY>
108.58970000000001

> <JCHEM_ROTATABLE_BOND_COUNT>
4

> <JCHEM_RULE_OF_FIVE>
1

> <JCHEM_TRADITIONAL_IUPAC>
(1R,2R,3R,4S)-1-(acetyloxy)-2,4,9-trihydroxy-11-(-lambda5-diazynylidene)-2-methyl-5,10-dioxo-1H,3H,4H-benzo[b]fluoren-3-yl acetate

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 04-SEP-22   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   04-SEP-22         0                                  
HETATM    1  C   UNK     0      -0.094  -7.681   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0       0.797  -8.937   0.000  0.00  0.00           C+0
HETATM    3  O   UNK     0       0.155 -10.337   0.000  0.00  0.00           O+0
HETATM    4  O   UNK     0       2.330  -8.793   0.000  0.00  0.00           O+0
HETATM    5  C   UNK     0       2.972  -7.393   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0       4.505  -7.249   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0       5.147  -5.849   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0       6.677  -6.027   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0       7.833  -5.009   0.000  0.00  0.00           C+0
HETATM   10  O   UNK     0       7.529  -3.499   0.000  0.00  0.00           O+0
HETATM   11  C   UNK     0       9.292  -5.501   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0      10.448  -4.483   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0      11.907  -4.975   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0      12.210  -6.485   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0      11.055  -7.503   0.000  0.00  0.00           C+0
HETATM   16  O   UNK     0      11.358  -9.013   0.000  0.00  0.00           O+0
HETATM   17  C   UNK     0       9.595  -7.011   0.000  0.00  0.00           C+0
HETATM   18  C   UNK     0       8.440  -8.029   0.000  0.00  0.00           C+0
HETATM   19  O   UNK     0       8.743  -9.539   0.000  0.00  0.00           O+0
HETATM   20  C   UNK     0       6.980  -7.537   0.000  0.00  0.00           C+0
HETATM   21  C   UNK     0       5.638  -8.292   0.000  0.00  0.00           C+0
HETATM   22  N   UNK     0       5.460  -9.822   0.000  0.00  0.00           N+1
HETATM   23  N   UNK     0       5.283 -11.351   0.000  0.00  0.00           N-1
HETATM   24  C   UNK     0       4.256  -4.593   0.000  0.00  0.00           C+0
HETATM   25  O   UNK     0       4.898  -3.193   0.000  0.00  0.00           O+0
HETATM   26  C   UNK     0       2.723  -4.737   0.000  0.00  0.00           C+0
HETATM   27  O   UNK     0       1.831  -3.482   0.000  0.00  0.00           O+0
HETATM   28  C   UNK     0       2.473  -2.082   0.000  0.00  0.00           C+0
HETATM   29  C   UNK     0       4.006  -1.938   0.000  0.00  0.00           C+0
HETATM   30  O   UNK     0       1.582  -0.826   0.000  0.00  0.00           O+0
HETATM   31  C   UNK     0       2.081  -6.137   0.000  0.00  0.00           C+0
HETATM   32  C   UNK     0       0.659  -5.545   0.000  0.00  0.00           C+0
HETATM   33  O   UNK     0       0.795  -6.984   0.000  0.00  0.00           O+0
CONECT    1    2                                                            
CONECT    2    1    3    4                                                  
CONECT    3    2                                                            
CONECT    4    2    5                                                       
CONECT    5    4    6   31                                                  
CONECT    6    5    7   21                                                  
CONECT    7    6    8   24                                                  
CONECT    8    7    9   20                                                  
CONECT    9    8   10   11                                                  
CONECT   10    9                                                            
CONECT   11    9   12   17                                                  
CONECT   12   11   13                                                       
CONECT   13   12   14                                                       
CONECT   14   13   15                                                       
CONECT   15   14   16   17                                                  
CONECT   16   15                                                            
CONECT   17   15   11   18                                                  
CONECT   18   17   19   20                                                  
CONECT   19   18                                                            
CONECT   20   18    8   21                                                  
CONECT   21   20    6   22                                                  
CONECT   22   21   23                                                       
CONECT   23   22                                                            
CONECT   24    7   25   26                                                  
CONECT   25   24                                                            
CONECT   26   24   27   31                                                  
CONECT   27   26   28                                                       
CONECT   28   27   29   30                                                  
CONECT   29   28                                                            
CONECT   30   28                                                            
CONECT   31   26    5   32   33                                             
CONECT   32   31                                                            
CONECT   33   31                                                            
MASTER        0    0    0    0    0    0    0    0   33    0   72    0
END

View in JSmol

Synonyms

Value	Source
FL-120D	MeSH

Chemical Formula

C₂₂H₁₈N₂O₉

Average Mass

454.3910 Da

Monoisotopic Mass

454.10123 Da

IUPAC Name

(1R,2R,3R,4S)-1-(acetyloxy)-2,4,9-trihydroxy-11-(-lambda5-diazynylidene)-2-methyl-5,10-dioxo-1H,2H,3H,4H,5H,10H,11H-benzo[b]fluoren-3-yl acetate

Traditional Name

(1R,2R,3R,4S)-1-(acetyloxy)-2,4,9-trihydroxy-11-(-lambda5-diazynylidene)-2-methyl-5,10-dioxo-1H,3H,4H-benzo[b]fluoren-3-yl acetate

CAS Registry Number

Not Available

SMILES

CC(=O)O[C@@H]1[C@@H](O)C2=C([C@@H](OC(C)=O)[C@@]1(C)O)C(=[N+]=[N-])C1=C2C(=O)C2=CC=CC(O)=C2C1=O

InChI Identifier

InChI=1S/C22H18N2O9/c1-7(25)32-20-15-13(19(30)21(22(20,3)31)33-8(2)26)12-14(16(15)24-23)18(29)11-9(17(12)28)5-4-6-10(11)27/h4-6,19-21,27,30-31H,1-3H3/t19-,20+,21+,22+/m0/s1

InChI Key

KPVVXTRWIKTJBS-DXBBTUNJSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Streptomyces chattanoogensis	LOTUS Database	35616633
Streptomyces murayamaensis	LOTUS Database	35616633

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as naphthols and derivatives. These are naphthalene derivatives carrying one or more hydroxyl (-OH) groups at any ring position.

Kingdom

Organic compounds

Super Class

Benzenoids

Class

Naphthalenes

Sub Class

Naphthols and derivatives

Direct Parent

Naphthols and derivatives

Alternative Parents

Substituents

1-naphthol
Indene
1-hydroxy-4-unsubstituted benzenoid
1-hydroxy-2-unsubstituted benzenoid
Dicarboxylic acid or derivatives
Tertiary alcohol
Vinylogous acid
Carboxylic acid ester
Secondary alcohol
Diazo compound
Polyol
Carboxylic acid derivative
Organic oxide
Organooxygen compound
Organonitrogen compound
Organopnictogen compound
Organic oxygen compound
Organic nitrogen compound
Alcohol
Organic zwitterion
Carbonyl group
Hydrocarbon derivative
Aromatic homopolycyclic compound

Molecular Framework

Aromatic homopolycyclic compounds

External Descriptors

kinamycin (CHEBI:31751 )

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	-1.6	ChemAxon
pKa (Strongest Acidic)	8.06	ChemAxon
pKa (Strongest Basic)	-3.5	ChemAxon
Physiological Charge	1	ChemAxon
Hydrogen Acceptor Count	8	ChemAxon
Hydrogen Donor Count	3	ChemAxon
Polar Surface Area	164.5 Å²	ChemAxon
Rotatable Bond Count	4	ChemAxon
Refractivity	108.59 m³·mol⁻¹	ChemAxon
Polarizability	43.09 Å³	ChemAxon
Number of Rings	4	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	No	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

C00018813

Chemspider ID

21245601

KEGG Compound ID

C12394

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

135440049

PDB ID

Not Available

ChEBI ID

31751

Good Scents ID

Not Available

References

General References

Liu X, Liu D, Xu M, Tao M, Bai L, Deng Z, Pfeifer BA, Jiang M: Reconstitution of Kinamycin Biosynthesis within the Heterologous Host Streptomyces albus J1074. J Nat Prod. 2018 Jan 26;81(1):72-77. doi: 10.1021/acs.jnatprod.7b00652. Epub 2018 Jan 17. [PubMed:29338229 ]
Zeng W, Eric Ballard T, Tkachenko AG, Burns VA, Feldheim DL, Melander C: Mimicking the biological activity of diazobenzo[b]fluorene natural products with electronically tuned diazofluorene analogs. Bioorg Med Chem Lett. 2006 Oct 1;16(19):5148-51. doi: 10.1016/j.bmcl.2006.07.024. Epub 2006 Jul 25. [PubMed:16870443 ]
LOTUS database [Link]

Showing NP-Card for (1r,2r,3r,4s)-1-(acetyloxy)-2,4,9-trihydroxy-2-methyl-5,10-dioxo-11-(λ⁵-diazynylidene)-1h,3h,4h-benzo[b]fluoren-3-yl acetate (NP0196830)

MOL for NP0196830 ((1r,2r,3r,4s)-1-(acetyloxy)-2,4,9-trihydroxy-2-methyl-5,10-dioxo-11-(λ⁵-diazynylidene)-1h,3h,4h-benzo[b]fluoren-3-yl acetate)

3D MOL for NP0196830 ((1r,2r,3r,4s)-1-(acetyloxy)-2,4,9-trihydroxy-2-methyl-5,10-dioxo-11-(λ⁵-diazynylidene)-1h,3h,4h-benzo[b]fluoren-3-yl acetate)

3D SDF for NP0196830 ((1r,2r,3r,4s)-1-(acetyloxy)-2,4,9-trihydroxy-2-methyl-5,10-dioxo-11-(λ⁵-diazynylidene)-1h,3h,4h-benzo[b]fluoren-3-yl acetate)

3D-SDF for NP0196830 ((1r,2r,3r,4s)-1-(acetyloxy)-2,4,9-trihydroxy-2-methyl-5,10-dioxo-11-(λ⁵-diazynylidene)-1h,3h,4h-benzo[b]fluoren-3-yl acetate)

PDB for NP0196830 ((1r,2r,3r,4s)-1-(acetyloxy)-2,4,9-trihydroxy-2-methyl-5,10-dioxo-11-(λ⁵-diazynylidene)-1h,3h,4h-benzo[b]fluoren-3-yl acetate)

3D PDB for NP0196830 ((1r,2r,3r,4s)-1-(acetyloxy)-2,4,9-trihydroxy-2-methyl-5,10-dioxo-11-(λ⁵-diazynylidene)-1h,3h,4h-benzo[b]fluoren-3-yl acetate)

SMILES for NP0196830 ((1r,2r,3r,4s)-1-(acetyloxy)-2,4,9-trihydroxy-2-methyl-5,10-dioxo-11-(λ⁵-diazynylidene)-1h,3h,4h-benzo[b]fluoren-3-yl acetate)

INCHI for NP0196830 ((1r,2r,3r,4s)-1-(acetyloxy)-2,4,9-trihydroxy-2-methyl-5,10-dioxo-11-(λ⁵-diazynylidene)-1h,3h,4h-benzo[b]fluoren-3-yl acetate)

Structure for NP0196830 ((1r,2r,3r,4s)-1-(acetyloxy)-2,4,9-trihydroxy-2-methyl-5,10-dioxo-11-(λ⁵-diazynylidene)-1h,3h,4h-benzo[b]fluoren-3-yl acetate)

3D Structure for NP0196830 ((1r,2r,3r,4s)-1-(acetyloxy)-2,4,9-trihydroxy-2-methyl-5,10-dioxo-11-(λ⁵-diazynylidene)-1h,3h,4h-benzo[b]fluoren-3-yl acetate)