NP-MRD: Showing NP-Card for (1r,2e,4s,6e,10s)-3,7-dimethyl-10-[(2r)-6-methylhept-5-en-2-yl]cyclodeca-2,6-diene-1,4-diol (NP0196820)

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Record Information

Version

2.0

Created at

2022-09-04 14:58:15 UTC

Updated at

2022-09-04 14:58:15 UTC

NP-MRD ID

NP0196820

Secondary Accession Numbers

None

Natural Product Identification

Common Name

(1r,2e,4s,6e,10s)-3,7-dimethyl-10-[(2r)-6-methylhept-5-en-2-yl]cyclodeca-2,6-diene-1,4-diol

Description

3Beta-Hydroxydilophol belongs to the class of organic compounds known as diterpenoids. These are terpene compounds formed by four isoprene units. (1r,2e,4s,6e,10s)-3,7-dimethyl-10-[(2r)-6-methylhept-5-en-2-yl]cyclodeca-2,6-diene-1,4-diol is found in Dictyota divaricata. (1r,2e,4s,6e,10s)-3,7-dimethyl-10-[(2r)-6-methylhept-5-en-2-yl]cyclodeca-2,6-diene-1,4-diol was first documented in 2009 (PMID: 19548693). Based on a literature review very few articles have been published on 3beta-Hydroxydilophol.

Structure

MOL SDF PDB SMILES InChI


  Mrv1652309042216582D          

 22 22  0  0  1  0            999 V2000
    4.5995    3.9591    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.0050    3.3871    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.2032    2.5862    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.2124    3.6159    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.6179    3.0439    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.8253    3.2727    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.2308    2.7006    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    0.4381    2.9295    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4289    1.8998    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    2.2216    1.6710    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.4197    0.8701    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.8253    0.2981    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.3185    0.9491    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.0234   -0.5028    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4289   -1.0748    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.6363   -0.8460    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    0.0418   -1.4180    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.4381   -0.0451    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3545    0.1837    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.0326    0.5269    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.8345    1.3278    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    0.0418    1.5566    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  1  0  0  0  0
  2  4  2  0  0  0  0
  4  5  1  0  0  0  0
  5  6  1  0  0  0  0
  6  7  1  0  0  0  0
  7  8  1  6  0  0  0
  9  7  1  6  0  0  0
  9 10  1  0  0  0  0
 10 11  1  0  0  0  0
 11 12  1  0  0  0  0
 12 13  1  0  0  0  0
 12 14  2  0  0  0  0
 14 15  1  0  0  0  0
 15 16  1  0  0  0  0
 16 17  1  6  0  0  0
 16 18  1  0  0  0  0
 18 19  1  0  0  0  0
 18 20  2  0  0  0  0
 20 21  1  0  0  0  0
  9 21  1  0  0  0  0
 21 22  1  6  0  0  0
M  END
> <DATABASE_ID>
NP0196820

> <DATABASE_NAME>
NP-MRD

> <SMILES>
C[C@H](CCC=C(C)C)[C@@H]1CC\C(C)=C\C[C@H](O)\C(C)=C\[C@@H]1O

> <INCHI_IDENTIFIER>
InChI=1S/C20H34O2/c1-14(2)7-6-8-16(4)18-11-9-15(3)10-12-19(21)17(5)13-20(18)22/h7,10,13,16,18-22H,6,8-9,11-12H2,1-5H3/b15-10+,17-13+/t16-,18+,19+,20+/m1/s1

> <INCHI_KEY>
OXWXNRAARMNGON-YPCCVXNOSA-N

> <FORMULA>
C20H34O2

> <MOLECULAR_WEIGHT>
306.49

> <EXACT_MASS>
306.255880335

> <JCHEM_ACCEPTOR_COUNT>
2

> <JCHEM_ATOM_COUNT>
56

> <JCHEM_AVERAGE_POLARIZABILITY>
37.689829548913835

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
2

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
1

> <JCHEM_IUPAC>
(1R,2E,4S,6E,10S)-3,7-dimethyl-10-[(2R)-6-methylhept-5-en-2-yl]cyclodeca-2,6-diene-1,4-diol

> <JCHEM_LOGP>
4.503218608666667

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
1

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA>
14.870377775095317

> <JCHEM_PKA_STRONGEST_ACIDIC>
14.252930214318372

> <JCHEM_PKA_STRONGEST_BASIC>
-2.9933016665995735

> <JCHEM_POLAR_SURFACE_AREA>
40.46

> <JCHEM_REFRACTIVITY>
97.26199999999999

> <JCHEM_ROTATABLE_BOND_COUNT>
4

> <JCHEM_RULE_OF_FIVE>
1

> <JCHEM_TRADITIONAL_IUPAC>
(1R,2E,4S,6E,10S)-3,7-dimethyl-10-[(2R)-6-methylhept-5-en-2-yl]cyclodeca-2,6-diene-1,4-diol

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 04-SEP-22   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   04-SEP-22         0                                  
HETATM    1  C   UNK     0       8.586   7.390   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0       7.476   6.323   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0       7.846   4.828   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0       5.996   6.750   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0       4.887   5.682   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0       3.407   6.109   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0       2.297   5.041   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0       0.818   5.468   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0       2.667   3.546   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0       4.147   3.119   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0       4.517   1.624   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0       3.407   0.556   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0       2.461   1.772   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0       3.777  -0.938   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0       2.667  -2.006   0.000  0.00  0.00           C+0
HETATM   16  C   UNK     0       1.188  -1.579   0.000  0.00  0.00           C+0
HETATM   17  O   UNK     0       0.078  -2.647   0.000  0.00  0.00           O+0
HETATM   18  C   UNK     0       0.818  -0.084   0.000  0.00  0.00           C+0
HETATM   19  C   UNK     0      -0.662   0.343   0.000  0.00  0.00           C+0
HETATM   20  C   UNK     0       1.928   0.984   0.000  0.00  0.00           C+0
HETATM   21  C   UNK     0       1.558   2.478   0.000  0.00  0.00           C+0
HETATM   22  O   UNK     0       0.078   2.906   0.000  0.00  0.00           O+0
CONECT    1    2                                                            
CONECT    2    1    3    4                                                  
CONECT    3    2                                                            
CONECT    4    2    5                                                       
CONECT    5    4    6                                                       
CONECT    6    5    7                                                       
CONECT    7    6    8    9                                                  
CONECT    8    7                                                            
CONECT    9    7   10   21                                                  
CONECT   10    9   11                                                       
CONECT   11   10   12                                                       
CONECT   12   11   13   14                                                  
CONECT   13   12                                                            
CONECT   14   12   15                                                       
CONECT   15   14   16                                                       
CONECT   16   15   17   18                                                  
CONECT   17   16                                                            
CONECT   18   16   19   20                                                  
CONECT   19   18                                                            
CONECT   20   18   21                                                       
CONECT   21   20    9   22                                                  
CONECT   22   21                                                            
MASTER        0    0    0    0    0    0    0    0   22    0   44    0
END

View in JSmol

Synonyms

Value	Source
3b-Hydroxydilophol	Generator
3Β-hydroxydilophol	Generator

Chemical Formula

C₂₀H₃₄O₂

Average Mass

306.4900 Da

Monoisotopic Mass

306.25588 Da

IUPAC Name

(1R,2E,4S,6E,10S)-3,7-dimethyl-10-[(2R)-6-methylhept-5-en-2-yl]cyclodeca-2,6-diene-1,4-diol

Traditional Name

(1R,2E,4S,6E,10S)-3,7-dimethyl-10-[(2R)-6-methylhept-5-en-2-yl]cyclodeca-2,6-diene-1,4-diol

CAS Registry Number

Not Available

SMILES

C[C@H](CCC=C(C)C)[C@@H]1CC\C(C)=C\C[C@H](O)\C(C)=C\[C@@H]1O

InChI Identifier

InChI=1S/C20H34O2/c1-14(2)7-6-8-16(4)18-11-9-15(3)10-12-19(21)17(5)13-20(18)22/h7,10,13,16,18-22H,6,8-9,11-12H2,1-5H3/b15-10+,17-13+/t16-,18+,19+,20+/m1/s1

InChI Key

OXWXNRAARMNGON-YPCCVXNOSA-N

Experimental Spectra

Not Available

Predicted Spectra

Not Available

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Dictyota divaricata	LOTUS Database	35616633

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as diterpenoids. These are terpene compounds formed by four isoprene units.

Kingdom

Organic compounds

Super Class

Lipids and lipid-like molecules

Class

Prenol lipids

Sub Class

Diterpenoids

Direct Parent

Diterpenoids

Alternative Parents

Substituents

Diterpenoid
Secondary alcohol
Organic oxygen compound
Hydrocarbon derivative
Organooxygen compound
Alcohol
Aliphatic homomonocyclic compound

Molecular Framework

Aliphatic homomonocyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	4.5	ChemAxon
pKa (Strongest Acidic)	14.25	ChemAxon
pKa (Strongest Basic)	-3	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	2	ChemAxon
Hydrogen Donor Count	2	ChemAxon
Polar Surface Area	40.46 Å²	ChemAxon
Rotatable Bond Count	4	ChemAxon
Refractivity	97.26 m³·mol⁻¹	ChemAxon
Polarizability	37.69 Å³	ChemAxon
Number of Rings	1	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	Yes	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

10473401

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

15715159

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

Viano Y, Bonhomme D, Camps M, Briand JF, Ortalo-Magne A, Blache Y, Piovetti L, Culioli G: Diterpenoids from the Mediterranean brown alga Dictyota sp. evaluated as antifouling substances against a marine bacterial biofilm. J Nat Prod. 2009 Jul;72(7):1299-304. doi: 10.1021/np900102f. [PubMed:19548693 ]
LOTUS database [Link]

Showing NP-Card for (1r,2e,4s,6e,10s)-3,7-dimethyl-10-[(2r)-6-methylhept-5-en-2-yl]cyclodeca-2,6-diene-1,4-diol (NP0196820)

MOL for NP0196820 ((1r,2e,4s,6e,10s)-3,7-dimethyl-10-[(2r)-6-methylhept-5-en-2-yl]cyclodeca-2,6-diene-1,4-diol)

3D MOL for NP0196820 ((1r,2e,4s,6e,10s)-3,7-dimethyl-10-[(2r)-6-methylhept-5-en-2-yl]cyclodeca-2,6-diene-1,4-diol)

3D SDF for NP0196820 ((1r,2e,4s,6e,10s)-3,7-dimethyl-10-[(2r)-6-methylhept-5-en-2-yl]cyclodeca-2,6-diene-1,4-diol)

3D-SDF for NP0196820 ((1r,2e,4s,6e,10s)-3,7-dimethyl-10-[(2r)-6-methylhept-5-en-2-yl]cyclodeca-2,6-diene-1,4-diol)

PDB for NP0196820 ((1r,2e,4s,6e,10s)-3,7-dimethyl-10-[(2r)-6-methylhept-5-en-2-yl]cyclodeca-2,6-diene-1,4-diol)

3D PDB for NP0196820 ((1r,2e,4s,6e,10s)-3,7-dimethyl-10-[(2r)-6-methylhept-5-en-2-yl]cyclodeca-2,6-diene-1,4-diol)

SMILES for NP0196820 ((1r,2e,4s,6e,10s)-3,7-dimethyl-10-[(2r)-6-methylhept-5-en-2-yl]cyclodeca-2,6-diene-1,4-diol)

INCHI for NP0196820 ((1r,2e,4s,6e,10s)-3,7-dimethyl-10-[(2r)-6-methylhept-5-en-2-yl]cyclodeca-2,6-diene-1,4-diol)

Structure for NP0196820 ((1r,2e,4s,6e,10s)-3,7-dimethyl-10-[(2r)-6-methylhept-5-en-2-yl]cyclodeca-2,6-diene-1,4-diol)

3D Structure for NP0196820 ((1r,2e,4s,6e,10s)-3,7-dimethyl-10-[(2r)-6-methylhept-5-en-2-yl]cyclodeca-2,6-diene-1,4-diol)