NP-MRD: Showing NP-Card for (1r,3r,7s,8r)-n,n-dimethyl-2-oxa-6-azatricyclo[4.2.1.0³,⁷]nonan-8-amine (NP0196583)

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Record Information

Version

2.0

Created at

2022-09-04 14:41:46 UTC

Updated at

2022-09-04 14:41:46 UTC

NP-MRD ID

NP0196583

Secondary Accession Numbers

None

Natural Product Identification

Common Name

(1r,3r,7s,8r)-n,n-dimethyl-2-oxa-6-azatricyclo[4.2.1.0³,⁷]nonan-8-amine

Description

N-Methylloline belongs to the class of organic compounds known as loline alkaloids and derivatives. These are alkaloids with a structure characterized by a saturated pyrrolizidine ring, a primary amine at the C-1 carbon, and an internal ether bridge joining two distant ring (C-2 and C-7) carbons. Different substituents at the C-1 amine, such as methyl, formyl, and acetyl groups, yield various loline species. (1r,3r,7s,8r)-n,n-dimethyl-2-oxa-6-azatricyclo[4.2.1.0³,⁷]nonan-8-amine is found in Lolium temulentum. (1r,3r,7s,8r)-n,n-dimethyl-2-oxa-6-azatricyclo[4.2.1.0³,⁷]nonan-8-amine was first documented in 2008 (PMID: 18655839). Based on a literature review very few articles have been published on N-Methylloline (PMID: 25531527).

Structure

MOL 3D MOL SDF PDB SMILES InChI

     RDKit          2D

 28 30  0  0  0  0  0  0  0  0999 V2000
    3.8173    0.5402    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.3907    1.0037    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    2.0788    2.4709    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.2760    0.0000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.3943   -1.2135    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0323   -0.7500    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9140   -1.9635    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0323   -3.1771    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.3943   -2.7135    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    1.2760   -1.5000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.3943    1.2135    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0323    0.7500    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.2439    0.0766    0.0000 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.2808    1.9668    0.0000 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.4001   -0.7438    0.0000 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.7670    3.9381    0.0000 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.5460    2.7828    0.0000 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.5845    2.3402    0.0000 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.4680   -0.6337    0.0000 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.1768   -1.3656    0.0000 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3917   -0.1160    0.0000 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.0287   -2.9672    0.0000 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.1427   -1.1032    0.0000 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4222   -4.5474    0.0000 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3313   -3.9271    0.0000 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.3907   -2.5037    0.0000 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.5047   -0.6397    0.0000 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.6805    2.6860    0.0000 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  2  4  1  0
  4 11  1  0
 11 10  1  0
 10  9  1  0
  9  8  1  0
  8  7  1  0
  7  6  1  0
  6 12  1  0
  6  5  1  0
  5  4  1  0
 12 11  1  0
  5  9  1  0
  1 13  1  0
  1 14  1  0
  1 15  1  0
  3 16  1  0
  3 17  1  0
  3 18  1  0
  4 19  1  1
 11 28  1  6
 10 26  1  0
 10 27  1  0
  8 24  1  0
  8 25  1  0
  7 22  1  0
  7 23  1  0
  6 21  1  6
  5 20  1  1
M  END

HEADER    PROTEIN                                 04-SEP-22   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   04-SEP-22         0                                  
HETATM    1  C   UNK     0      -2.207  -1.100   0.000  0.00  0.00           C+0
HETATM    2  N   UNK     0      -0.800  -0.475   0.000  0.00  0.00           N+0
HETATM    3  C   UNK     0      -0.638   1.057   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0       0.445  -1.381   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0       2.298  -1.424   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0       2.475  -0.061   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0       4.115  -0.105   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0       4.629  -1.591   0.000  0.00  0.00           C+0
HETATM    9  N   UNK     0       3.287  -2.499   0.000  0.00  0.00           N+0
HETATM   10  C   UNK     0       2.073  -3.467   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0       0.811  -2.426   0.000  0.00  0.00           C+0
HETATM   12  O   UNK     0       0.837  -0.388   0.000  0.00  0.00           O+0
CONECT    1    2                                                            
CONECT    2    1    3    4                                                  
CONECT    3    2                                                            
CONECT    4    2    5   11                                                  
CONECT    5    4    6    9                                                  
CONECT    6    5    7   12                                                  
CONECT    7    6    8                                                       
CONECT    8    7    9                                                       
CONECT    9    8    5   10                                                  
CONECT   10    9   11                                                       
CONECT   11   10    4   12                                                  
CONECT   12   11    6                                                       
MASTER        0    0    0    0    0    0    0    0   12    0   28    0
END

View in JSmol

Synonyms

Not Available

Chemical Formula

C₉H₁₆N₂O

Average Mass

168.2400 Da

Monoisotopic Mass

168.12626 Da

IUPAC Name

(1R,3R,7S,8R)-N,N-dimethyl-2-oxa-6-azatricyclo[4.2.1.0^{3,7}]nonan-8-amine

Traditional Name

(1R,3R,7S,8R)-N,N-dimethyl-2-oxa-6-azatricyclo[4.2.1.0^{3,7}]nonan-8-amine

CAS Registry Number

Not Available

SMILES

CN(C)[C@H]1[C@H]2CN3CC[C@@H](O2)[C@H]13

InChI Identifier

InChI=1S/C9H16N2O/c1-10(2)8-7-5-11-4-3-6(12-7)9(8)11/h6-9H,3-5H2,1-2H3/t6-,7-,8+,9-/m1/s1

InChI Key

FIWXXQWEVIQSAB-LURQLKTLSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Lolium temulentum	LOTUS Database	35616633

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as loline alkaloids and derivatives. These are alkaloids with a structure characterized by a saturated pyrrolizidine ring, a primary amine at the C-1 carbon, and an internal ether bridge joining two distant ring (C-2 and C-7) carbons. Different substituents at the C-1 amine, such as methyl, formyl, and acetyl groups, yield various loline species.

Kingdom

Organic compounds

Super Class

Alkaloids and derivatives

Class

Loline alkaloids and derivatives

Sub Class

Not Available

Direct Parent

Loline alkaloids and derivatives

Alternative Parents

Substituents

Loline
Pyrrolizidine
Para-oxazepine
Morpholine
Oxazinane
N-alkylpyrrolidine
Oxolane
Pyrrolidine
Tertiary amine
Tertiary aliphatic amine
Azacycle
Oxacycle
Ether
Dialkyl ether
Organoheterocyclic compound
Organic nitrogen compound
Organooxygen compound
Organonitrogen compound
Hydrocarbon derivative
Organic oxygen compound
Amine
Aliphatic heteropolycyclic compound

Molecular Framework

Aliphatic heteropolycyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	-0.054	ChemAxon
pKa (Strongest Basic)	8.27	ChemAxon
Physiological Charge	1	ChemAxon
Hydrogen Acceptor Count	3	ChemAxon
Hydrogen Donor Count	0	ChemAxon
Polar Surface Area	15.71 Å²	ChemAxon
Rotatable Bond Count	1	ChemAxon
Refractivity	46.69 m³·mol⁻¹	ChemAxon
Polarizability	40.41 Å³	ChemAxon
Number of Rings	3	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	Yes	ChemAxon
Veber's Rule	Yes	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

C00023612

Chemspider ID

Not Available

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

101613942

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

Pan J, Bhardwaj M, Nagabhyru P, Grossman RB, Schardl CL: Enzymes from fungal and plant origin required for chemical diversification of insecticidal loline alkaloids in grass-Epichloe symbiota. PLoS One. 2014 Dec 22;9(12):e115590. doi: 10.1371/journal.pone.0115590. eCollection 2014. [PubMed:25531527 ]
Spiering MJ, Faulkner JR, Zhang DX, Machado C, Grossman RB, Schardl CL: Role of the LolP cytochrome P450 monooxygenase in loline alkaloid biosynthesis. Fungal Genet Biol. 2008 Sep;45(9):1307-14. doi: 10.1016/j.fgb.2008.07.001. Epub 2008 Jul 8. [PubMed:18655839 ]
LOTUS database [Link]

Showing NP-Card for (1r,3r,7s,8r)-n,n-dimethyl-2-oxa-6-azatricyclo[4.2.1.0³,⁷]nonan-8-amine (NP0196583)

MOL for NP0196583 ((1r,3r,7s,8r)-n,n-dimethyl-2-oxa-6-azatricyclo[4.2.1.0³,⁷]nonan-8-amine)

3D MOL for NP0196583 ((1r,3r,7s,8r)-n,n-dimethyl-2-oxa-6-azatricyclo[4.2.1.0³,⁷]nonan-8-amine)

3D SDF for NP0196583 ((1r,3r,7s,8r)-n,n-dimethyl-2-oxa-6-azatricyclo[4.2.1.0³,⁷]nonan-8-amine)

3D-SDF for NP0196583 ((1r,3r,7s,8r)-n,n-dimethyl-2-oxa-6-azatricyclo[4.2.1.0³,⁷]nonan-8-amine)

PDB for NP0196583 ((1r,3r,7s,8r)-n,n-dimethyl-2-oxa-6-azatricyclo[4.2.1.0³,⁷]nonan-8-amine)

3D PDB for NP0196583 ((1r,3r,7s,8r)-n,n-dimethyl-2-oxa-6-azatricyclo[4.2.1.0³,⁷]nonan-8-amine)

SMILES for NP0196583 ((1r,3r,7s,8r)-n,n-dimethyl-2-oxa-6-azatricyclo[4.2.1.0³,⁷]nonan-8-amine)

INCHI for NP0196583 ((1r,3r,7s,8r)-n,n-dimethyl-2-oxa-6-azatricyclo[4.2.1.0³,⁷]nonan-8-amine)

Structure for NP0196583 ((1r,3r,7s,8r)-n,n-dimethyl-2-oxa-6-azatricyclo[4.2.1.0³,⁷]nonan-8-amine)

3D Structure for NP0196583 ((1r,3r,7s,8r)-n,n-dimethyl-2-oxa-6-azatricyclo[4.2.1.0³,⁷]nonan-8-amine)