NP-MRD: Showing NP-Card for petroselaidic acid (NP0195642)

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Record Information

Version

2.0

Created at

2022-09-04 13:32:42 UTC

Updated at

2022-09-04 13:32:42 UTC

NP-MRD ID

NP0195642

Secondary Accession Numbers

None

Natural Product Identification

Common Name

petroselaidic acid

Description

Trans-6-Octadecenoic acid, also known as octadec-6t-enoic acid or octadec-6t-ensaeure, belongs to the class of organic compounds known as long-chain fatty acids. These are fatty acids with an aliphatic tail that contains between 13 and 21 carbon atoms. petroselaidic acid is found in Althaea armeniaca and Carum carvi. Trans-6-Octadecenoic acid is a very hydrophobic molecule, practically insoluble (in water), and relatively neutral.

Structure

MOL 3D MOL SDF PDB SMILES InChI

     RDKit          3D

 54 53  0  0  0  0  0  0  0  0999 V2000
    7.0937   -1.4659   -0.5316 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.9093   -1.2656    0.3941 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.6130   -1.2473   -0.3782 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.4337   -1.0550    0.5482 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.4831    0.2203    1.3206 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.5086    1.4234    0.4347 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.2703    1.4795   -0.4561 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.0414    1.5447    0.3838 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1922    1.6256   -0.4651 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2839    0.4054   -1.3360 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5604    0.5287   -2.1665 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.6885    0.6033   -1.1700 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.4966    1.6291   -1.1014 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.6277    1.8518   -0.2064 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.9702    0.7221    0.7122 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.4575   -0.4484   -0.0710 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.8163   -1.6537    0.7517 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.7200   -2.2126    1.5525 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5511   -1.7683    1.5937 O   0  0  0  0  0  0  0  0  0  0  0  0
   -5.0043   -3.3273    2.3290 O   0  0  0  0  0  0  0  0  0  0  0  0
    7.4966   -2.5011   -0.3564 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.7863   -1.3701   -1.6065 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.9179   -0.7723   -0.3345 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.0865   -0.2611    0.8765 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.9175   -2.0262    1.1902 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.5483   -2.2545   -0.8840 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.6130   -0.4869   -1.1728 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.3970   -1.8899    1.2990 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.4793   -1.1172   -0.0196 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.6387    0.3000    2.0230 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.4287    0.2276    1.9134 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.4213    1.3824   -0.2066 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.5208    2.3310    1.1037 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.3107    0.6069   -1.1288 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.3715    2.3842   -1.1100 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.9672    0.5790    0.9413 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.0789    2.3250    1.1649 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1356    2.5414   -1.0953 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1232    1.6534    0.1539 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.5738    0.2943   -2.0354 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3396   -0.5019   -0.7010 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6934   -0.3421   -2.8305 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5202    1.4472   -2.7665 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7636   -0.2212   -0.5070 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.2918    2.4454   -1.8281 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.5591    2.8256    0.3461 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.5372    1.9985   -0.8671 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.1158    0.4760    1.3862 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.7541    1.1231    1.4138 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.8791   -0.6674   -0.9496 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.4755   -0.1006   -0.4864 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.7193   -1.4806    1.3717 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.1177   -2.4506    0.0176 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.5131   -4.0871    1.8515 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  3  4  1  0
  4  5  1  0
  5  6  1  0
  6  7  1  0
  7  8  1  0
  8  9  1  0
  9 10  1  0
 10 11  1  0
 11 12  1  0
 12 13  2  0
 13 14  1  0
 14 15  1  0
 15 16  1  0
 16 17  1  0
 17 18  1  0
 18 20  1  0
 18 19  2  0
  1 21  1  0
  1 22  1  0
  1 23  1  0
  2 24  1  0
  2 25  1  0
  3 26  1  0
  3 27  1  0
  4 28  1  0
  4 29  1  0
  5 30  1  0
  5 31  1  0
  6 32  1  0
  6 33  1  0
  7 34  1  0
  7 35  1  0
  8 36  1  0
  8 37  1  0
  9 38  1  0
  9 39  1  0
 10 40  1  0
 10 41  1  0
 11 42  1  0
 11 43  1  0
 12 44  1  0
 13 45  1  0
 14 46  1  0
 14 47  1  0
 15 48  1  0
 15 49  1  0
 16 50  1  0
 16 51  1  0
 17 52  1  0
 17 53  1  0
 20 54  1  0
M  END


  Mrv1652303202021142D          

 20 19  0  0  0  0            999 V2000
   -1.4300   -0.2068    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7153   -0.6186    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1450   -0.6186    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0004   -0.2068    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8599   -0.2068    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7152   -0.6186    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5747   -0.6186    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4288   -0.2068    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.2896   -0.2068    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.1444   -0.6186    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.0046   -0.6186    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.8581   -0.2068    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.7194   -0.2068    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.5738   -0.6186    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.4364   -0.6186    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -5.7194    0.6186    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.2893   -0.2068    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.0030   -0.6186    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.7187   -0.2068    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.4364   -0.6186    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  1  3  2  0  0  0  0
  2  4  1  0  0  0  0
  3  5  1  0  0  0  0
  4  6  1  0  0  0  0
  5  7  1  0  0  0  0
  6  8  1  0  0  0  0
  7  9  1  0  0  0  0
  8 10  1  0  0  0  0
  9 11  1  0  0  0  0
 10 12  1  0  0  0  0
 11 13  1  0  0  0  0
 12 14  1  0  0  0  0
 13 15  1  0  0  0  0
 13 16  2  0  0  0  0
 14 17  1  0  0  0  0
 17 18  1  0  0  0  0
 18 19  1  0  0  0  0
 19 20  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0195642

> <DATABASE_NAME>
NP-MRD

> <SMILES>
CCCCCCCCCCC\C=C\CCCCC(O)=O

> <INCHI_IDENTIFIER>
InChI=1S/C18H34O2/c1-2-3-4-5-6-7-8-9-10-11-12-13-14-15-16-17-18(19)20/h12-13H,2-11,14-17H2,1H3,(H,19,20)/b13-12+

> <INCHI_KEY>
CNVZJPUDSLNTQU-OUKQBFOZSA-N

> <FORMULA>
C18H34O2

> <MOLECULAR_WEIGHT>
282.4614

> <EXACT_MASS>
282.255880332

> <JCHEM_ACCEPTOR_COUNT>
2

> <JCHEM_ATOM_COUNT>
54

> <JCHEM_AVERAGE_POLARIZABILITY>
37.65679002943827

> <JCHEM_BIOAVAILABILITY>
0

> <JCHEM_DONOR_COUNT>
1

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
(6E)-octadec-6-enoic acid

> <ALOGPS_LOGP>
7.72

> <JCHEM_LOGP>
6.783798451000001

> <ALOGPS_LOGS>
-6.39

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
0

> <JCHEM_PHYSIOLOGICAL_CHARGE>
-1

> <JCHEM_PKA_STRONGEST_ACIDIC>
4.885821319747302

> <JCHEM_POLAR_SURFACE_AREA>
37.3

> <JCHEM_REFRACTIVITY>
87.4022

> <JCHEM_ROTATABLE_BOND_COUNT>
15

> <JCHEM_RULE_OF_FIVE>
0

> <ALOGPS_SOLUBILITY>
1.15e-04 g/l

> <JCHEM_TRADITIONAL_IUPAC>
petroselenic acid

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 20-MAR-20   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   20-MAR-20         0                                  
HETATM    1  C   UNK     0      -2.669  -0.386   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0      -1.335  -1.155   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0      -4.004  -1.155   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0      -0.001  -0.386   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0      -5.338  -0.386   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0       1.335  -1.155   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0      -6.673  -1.155   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0       2.667  -0.386   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0      -8.007  -0.386   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0       4.003  -1.155   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0      -9.342  -1.155   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0       5.335  -0.386   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0     -10.676  -0.386   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0       6.671  -1.155   0.000  0.00  0.00           C+0
HETATM   15  O   UNK     0     -12.015  -1.155   0.000  0.00  0.00           O+0
HETATM   16  O   UNK     0     -10.676   1.155   0.000  0.00  0.00           O+0
HETATM   17  C   UNK     0       8.007  -0.386   0.000  0.00  0.00           C+0
HETATM   18  C   UNK     0       9.339  -1.155   0.000  0.00  0.00           C+0
HETATM   19  C   UNK     0      10.675  -0.386   0.000  0.00  0.00           C+0
HETATM   20  C   UNK     0      12.015  -1.155   0.000  0.00  0.00           C+0
CONECT    1    2    3                                                       
CONECT    2    1    4                                                       
CONECT    3    1    5                                                       
CONECT    4    2    6                                                       
CONECT    5    3    7                                                       
CONECT    6    4    8                                                       
CONECT    7    5    9                                                       
CONECT    8    6   10                                                       
CONECT    9    7   11                                                       
CONECT   10    8   12                                                       
CONECT   11    9   13                                                       
CONECT   12   10   14                                                       
CONECT   13   11   15   16                                                  
CONECT   14   12   17                                                       
CONECT   15   13                                                            
CONECT   16   13                                                            
CONECT   17   14   18                                                       
CONECT   18   17   19                                                       
CONECT   19   18   20                                                       
CONECT   20   19                                                            
MASTER        0    0    0    0    0    0    0    0   20    0   38    0
END

View in JSmol

Synonyms

Value	Source
6E-Octadecenoic acid	ChEBI
Octadec-6t-enoic acid	ChEBI
Octadec-6t-ensaeure	ChEBI
trans-Delta(6)-Octadecenoic acid	ChEBI
trans-Octadec-6-enoic acid	ChEBI
6E-Octadecenoate	Generator
Octadec-6t-enoate	Generator
trans-delta(6)-Octadecenoate	Generator
trans-Δ(6)-octadecenoate	Generator
trans-Δ(6)-octadecenoic acid	Generator
trans-Octadec-6-enoate	Generator
trans-6-Octadecenoate	Generator
Petroselinic acid, (e)-isomer	MeSH
Petroselinic acid, (Z)-isomer	MeSH
Petroselinic acid	MeSH
Petroselenic acid	MeSH
Petroselinic acid, sodium salt, (Z)-isomer	MeSH
trans-6-Octadecenoic acid	ChEBI
6-Octadecenoate	Generator

Chemical Formula

C₁₈H₃₄O₂

Average Mass

282.4614 Da

Monoisotopic Mass

282.25588 Da

IUPAC Name

(6E)-octadec-6-enoic acid

Traditional Name

petroselenic acid

CAS Registry Number

Not Available

SMILES

CCCCCCCCCCC\C=C\CCCCC(O)=O

InChI Identifier

InChI=1S/C18H34O2/c1-2-3-4-5-6-7-8-9-10-11-12-13-14-15-16-17-18(19)20/h12-13H,2-11,14-17H2,1H3,(H,19,20)/b13-12+

InChI Key

CNVZJPUDSLNTQU-OUKQBFOZSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Althaea armeniaca	LOTUS Database	35616633
Carum carvi	LOTUS Database	35616633

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as long-chain fatty acids. These are fatty acids with an aliphatic tail that contains between 13 and 21 carbon atoms.

Kingdom

Organic compounds

Super Class

Lipids and lipid-like molecules

Class

Fatty Acyls

Sub Class

Fatty acids and conjugates

Direct Parent

Long-chain fatty acids

Alternative Parents

Substituents

Long-chain fatty acid
Unsaturated fatty acid
Straight chain fatty acid
Monocarboxylic acid or derivatives
Carboxylic acid
Carboxylic acid derivative
Organic oxygen compound
Organic oxide
Hydrocarbon derivative
Organooxygen compound
Carbonyl group
Aliphatic acyclic compound

Molecular Framework

Aliphatic acyclic compounds

External Descriptors

octadec-6-enoic acid (CHEBI:30829 )
Unsaturated fatty acids (LMFA01030067 )

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	7.72	ALOGPS
logP	6.78	ChemAxon
logS	-6.4	ALOGPS
pKa (Strongest Acidic)	4.89	ChemAxon
Physiological Charge	-1	ChemAxon
Hydrogen Acceptor Count	2	ChemAxon
Hydrogen Donor Count	1	ChemAxon
Polar Surface Area	37.3 Å²	ChemAxon
Rotatable Bond Count	15	ChemAxon
Refractivity	87.4 m³·mol⁻¹	ChemAxon
Polarizability	37.66 Å³	ChemAxon
Number of Rings	0	ChemAxon
Bioavailability	No	ChemAxon
Rule of Five	No	ChemAxon
Ghose Filter	No	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

FDB011271

KNApSAcK ID

Not Available

Chemspider ID

Not Available

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

5282754

PDB ID

Not Available

ChEBI ID

30829

Good Scents ID

Not Available

References

General References

LOTUS database [Link]

Showing NP-Card for petroselaidic acid (NP0195642)

MOL for NP0195642 (petroselaidic acid)

3D MOL for NP0195642 (petroselaidic acid)

3D SDF for NP0195642 (petroselaidic acid)

3D-SDF for NP0195642 (petroselaidic acid)

PDB for NP0195642 (petroselaidic acid)

3D PDB for NP0195642 (petroselaidic acid)

SMILES for NP0195642 (petroselaidic acid)

INCHI for NP0195642 (petroselaidic acid)

Structure for NP0195642 (petroselaidic acid)

3D Structure for NP0195642 (petroselaidic acid)