NP-MRD: Showing NP-Card for 5-[(1e)-3-hydroxybut-1-en-1-yl]-4-{[4-(methoxymethyl)phenyl]amino}oxolan-2-one (NP0195558)

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Record Information

Version

2.0

Created at

2022-09-04 13:26:38 UTC

Updated at

2022-09-04 13:26:38 UTC

NP-MRD ID

NP0195558

Secondary Accession Numbers

None

Natural Product Identification

Common Name

5-[(1e)-3-hydroxybut-1-en-1-yl]-4-{[4-(methoxymethyl)phenyl]amino}oxolan-2-one

Description

Obscurolide A4 belongs to the class of organic compounds known as benzylethers. These are aromatic ethers with the general formula ROCR' (R = alkyl, aryl; R'=benzene). Based on a literature review very few articles have been published on Obscurolide A4.

Structure

MOL 3D MOL SDF PDB SMILES InChI

     RDKit          3D

 42 43  0  0  0  0  0  0  0  0999 V2000
    6.8473    0.3858    0.0636 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.5385   -0.1047    0.1667 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.6914    0.9499   -0.1770 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.2618    0.5604   -0.1082 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.5185    0.7015    1.0422 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.2123    0.3438    1.0993 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.5382   -0.1902   -0.0045 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8280   -0.5540    0.0762 N   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5342   -1.1557   -1.0309 C   0  0  1  0  0  0  0  0  0  0  0  0
   -0.8477   -2.4762   -1.3369 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8096   -3.4985   -0.8360 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7813   -4.7457   -0.9907 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7992   -2.8294   -0.1318 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9280   -1.5490   -0.6780 C   0  0  1  0  0  0  0  0  0  0  0  0
   -3.5581   -0.6417    0.3168 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.8239    0.6291    0.0318 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.4475    1.5798    0.9744 C   0  0  1  0  0  0  0  0  0  0  0  0
   -3.4419    2.1946    1.9206 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.9849    2.6339    0.2136 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.2838   -0.3293   -1.1507 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.6294    0.0384   -1.2118 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.9146    1.2374    0.7802 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.0681    0.7048   -0.9790 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.5261   -0.4396    0.3675 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.9100    1.7723    0.5492 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.9161    1.3295   -1.1938 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.0129    1.1173    1.9298 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.6171    0.4540    2.0113 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3498   -0.3882    0.9530 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5117   -0.5055   -1.9373 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.0956   -2.5991   -0.7371 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6296   -2.6111   -2.4046 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5242   -1.6352   -1.6072 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.8190   -0.9962    1.3081 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5410    0.9441   -0.9881 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.2631    1.1614    1.5636 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.9996    2.9359    2.5444 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9898    1.4659    2.6010 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.6484    2.7453    1.4075 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.5010    2.1963   -0.5173 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.8186   -0.7361   -2.0448 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.1614   -0.0961   -2.1436 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  3  4  1  0
  4  5  2  0
  5  6  1  0
  6  7  2  0
  7  8  1  0
  8  9  1  0
  9 10  1  0
 10 11  1  0
 11 12  2  0
 11 13  1  0
 13 14  1  0
 14 15  1  0
 15 16  2  0
 16 17  1  0
 17 18  1  0
 17 19  1  0
  7 20  1  0
 20 21  2  0
 21  4  1  0
 14  9  1  0
  1 22  1  0
  1 23  1  0
  1 24  1  0
  3 25  1  0
  3 26  1  0
  5 27  1  0
  6 28  1  0
  8 29  1  0
  9 30  1  6
 10 31  1  0
 10 32  1  0
 14 33  1  6
 15 34  1  0
 16 35  1  0
 17 36  1  1
 18 37  1  0
 18 38  1  0
 18 39  1  0
 19 40  1  0
 20 41  1  0
 21 42  1  0
M  END


  Mrv1652309042215262D          

 21 22  0  0  0  0            999 V2000
    2.9646    7.2402    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.2501    6.8277    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.2501    6.0027    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.5356    5.5902    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.5356    4.7652    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.8212    4.3527    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.1067    4.7652    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6078    4.3527    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6078    3.5277    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0597    3.0428    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1953    2.2581    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.2897    1.5907    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0203    2.2581    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2752    3.0428    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0598    3.2977    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2314    4.1047    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.0160    4.3596    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.6291    3.8076    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.1875    5.1666    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.1067    5.5902    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.8212    6.0027    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  1  0  0  0  0
  3  4  1  0  0  0  0
  4  5  2  0  0  0  0
  5  6  1  0  0  0  0
  6  7  2  0  0  0  0
  7  8  1  0  0  0  0
  8  9  1  0  0  0  0
  9 10  1  0  0  0  0
 10 11  1  0  0  0  0
 11 12  2  0  0  0  0
 11 13  1  0  0  0  0
 13 14  1  0  0  0  0
  9 14  1  0  0  0  0
 14 15  1  0  0  0  0
 15 16  2  0  0  0  0
 16 17  1  0  0  0  0
 17 18  1  0  0  0  0
 17 19  1  0  0  0  0
  7 20  1  0  0  0  0
 20 21  2  0  0  0  0
  4 21  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0195558

> <DATABASE_NAME>
NP-MRD

> <SMILES>
COCC1=CC=C(NC2CC(=O)OC2\C=C\C(C)O)C=C1

> <INCHI_IDENTIFIER>
InChI=1S/C16H21NO4/c1-11(18)3-8-15-14(9-16(19)21-15)17-13-6-4-12(5-7-13)10-20-2/h3-8,11,14-15,17-18H,9-10H2,1-2H3/b8-3+

> <INCHI_KEY>
HYRHDNDBYPEHPQ-FPYGCLRLSA-N

> <FORMULA>
C16H21NO4

> <MOLECULAR_WEIGHT>
291.347

> <EXACT_MASS>
291.14705816

> <JCHEM_ACCEPTOR_COUNT>
4

> <JCHEM_ATOM_COUNT>
42

> <JCHEM_AVERAGE_POLARIZABILITY>
31.10998671467067

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
2

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
1

> <JCHEM_IUPAC>
5-[(1E)-3-hydroxybut-1-en-1-yl]-4-{[4-(methoxymethyl)phenyl]amino}oxolan-2-one

> <JCHEM_LOGP>
1.3843886629999997

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
2

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA>
19.086046442466362

> <JCHEM_PKA_STRONGEST_ACIDIC>
15.300117773597876

> <JCHEM_PKA_STRONGEST_BASIC>
3.54231062205933

> <JCHEM_POLAR_SURFACE_AREA>
67.79

> <JCHEM_REFRACTIVITY>
81.77310000000001

> <JCHEM_ROTATABLE_BOND_COUNT>
6

> <JCHEM_RULE_OF_FIVE>
1

> <JCHEM_TRADITIONAL_IUPAC>
5-[(1E)-3-hydroxybut-1-en-1-yl]-4-{[4-(methoxymethyl)phenyl]amino}oxolan-2-one

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 04-SEP-22   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   04-SEP-22         0                                  
HETATM    1  C   UNK     0       5.534  13.515   0.000  0.00  0.00           C+0
HETATM    2  O   UNK     0       4.200  12.745   0.000  0.00  0.00           O+0
HETATM    3  C   UNK     0       4.200  11.205   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0       2.867  10.435   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0       2.867   8.895   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0       1.533   8.125   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0       0.199   8.895   0.000  0.00  0.00           C+0
HETATM    8  N   UNK     0      -1.134   8.125   0.000  0.00  0.00           N+0
HETATM    9  C   UNK     0      -1.134   6.585   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0       0.111   5.680   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0      -0.364   4.215   0.000  0.00  0.00           C+0
HETATM   12  O   UNK     0       0.541   2.969   0.000  0.00  0.00           O+0
HETATM   13  O   UNK     0      -1.904   4.215   0.000  0.00  0.00           O+0
HETATM   14  C   UNK     0      -2.380   5.680   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0      -3.845   6.156   0.000  0.00  0.00           C+0
HETATM   16  C   UNK     0      -4.165   7.662   0.000  0.00  0.00           C+0
HETATM   17  C   UNK     0      -5.630   8.138   0.000  0.00  0.00           C+0
HETATM   18  C   UNK     0      -6.774   7.107   0.000  0.00  0.00           C+0
HETATM   19  O   UNK     0      -5.950   9.644   0.000  0.00  0.00           O+0
HETATM   20  C   UNK     0       0.199  10.435   0.000  0.00  0.00           C+0
HETATM   21  C   UNK     0       1.533  11.205   0.000  0.00  0.00           C+0
CONECT    1    2                                                            
CONECT    2    1    3                                                       
CONECT    3    2    4                                                       
CONECT    4    3    5   21                                                  
CONECT    5    4    6                                                       
CONECT    6    5    7                                                       
CONECT    7    6    8   20                                                  
CONECT    8    7    9                                                       
CONECT    9    8   10   14                                                  
CONECT   10    9   11                                                       
CONECT   11   10   12   13                                                  
CONECT   12   11                                                            
CONECT   13   11   14                                                       
CONECT   14   13    9   15                                                  
CONECT   15   14   16                                                       
CONECT   16   15   17                                                       
CONECT   17   16   18   19                                                  
CONECT   18   17                                                            
CONECT   19   17                                                            
CONECT   20    7   21                                                       
CONECT   21   20    4                                                       
MASTER        0    0    0    0    0    0    0    0   21    0   44    0
END

View in JSmol

Synonyms

Not Available

Chemical Formula

C₁₆H₂₁NO₄

Average Mass

291.3470 Da

Monoisotopic Mass

291.14706 Da

IUPAC Name

5-[(1E)-3-hydroxybut-1-en-1-yl]-4-{[4-(methoxymethyl)phenyl]amino}oxolan-2-one

Traditional Name

5-[(1E)-3-hydroxybut-1-en-1-yl]-4-{[4-(methoxymethyl)phenyl]amino}oxolan-2-one

CAS Registry Number

Not Available

SMILES

COCC1=CC=C(NC2CC(=O)OC2\C=C\C(C)O)C=C1

InChI Identifier

InChI=1S/C16H21NO4/c1-11(18)3-8-15-14(9-16(19)21-15)17-13-6-4-12(5-7-13)10-20-2/h3-8,11,14-15,17-18H,9-10H2,1-2H3/b8-3+

InChI Key

HYRHDNDBYPEHPQ-FPYGCLRLSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Not Available

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as benzylethers. These are aromatic ethers with the general formula ROCR' (R = alkyl, aryl; R'=benzene).

Kingdom

Organic compounds

Super Class

Benzenoids

Class

Benzene and substituted derivatives

Sub Class

Benzylethers

Direct Parent

Benzylethers

Alternative Parents

Substituents

Benzylether
Phenylalkylamine
Aniline or substituted anilines
Secondary aliphatic/aromatic amine
Gamma butyrolactone
Oxolane
Amino acid or derivatives
Carboxylic acid ester
Lactone
Secondary alcohol
Carboxylic acid derivative
Dialkyl ether
Ether
Oxacycle
Monocarboxylic acid or derivatives
Organoheterocyclic compound
Secondary amine
Organic nitrogen compound
Amine
Organic oxide
Hydrocarbon derivative
Organic oxygen compound
Organonitrogen compound
Organooxygen compound
Carbonyl group
Alcohol
Aromatic heteromonocyclic compound

Molecular Framework

Aromatic heteromonocyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	1.38	ChemAxon
pKa (Strongest Acidic)	15.3	ChemAxon
pKa (Strongest Basic)	3.54	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	4	ChemAxon
Hydrogen Donor Count	2	ChemAxon
Polar Surface Area	67.79 Å²	ChemAxon
Rotatable Bond Count	6	ChemAxon
Refractivity	81.77 m³·mol⁻¹	ChemAxon
Polarizability	31.11 Å³	ChemAxon
Number of Rings	2	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	Yes	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

C00016717

Chemspider ID

4943222

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

6438771

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

LOTUS database [Link]

Showing NP-Card for 5-[(1e)-3-hydroxybut-1-en-1-yl]-4-{[4-(methoxymethyl)phenyl]amino}oxolan-2-one (NP0195558)

MOL for NP0195558 (5-[(1e)-3-hydroxybut-1-en-1-yl]-4-{[4-(methoxymethyl)phenyl]amino}oxolan-2-one)

3D MOL for NP0195558 (5-[(1e)-3-hydroxybut-1-en-1-yl]-4-{[4-(methoxymethyl)phenyl]amino}oxolan-2-one)

3D SDF for NP0195558 (5-[(1e)-3-hydroxybut-1-en-1-yl]-4-{[4-(methoxymethyl)phenyl]amino}oxolan-2-one)

3D-SDF for NP0195558 (5-[(1e)-3-hydroxybut-1-en-1-yl]-4-{[4-(methoxymethyl)phenyl]amino}oxolan-2-one)

PDB for NP0195558 (5-[(1e)-3-hydroxybut-1-en-1-yl]-4-{[4-(methoxymethyl)phenyl]amino}oxolan-2-one)

3D PDB for NP0195558 (5-[(1e)-3-hydroxybut-1-en-1-yl]-4-{[4-(methoxymethyl)phenyl]amino}oxolan-2-one)

SMILES for NP0195558 (5-[(1e)-3-hydroxybut-1-en-1-yl]-4-{[4-(methoxymethyl)phenyl]amino}oxolan-2-one)

INCHI for NP0195558 (5-[(1e)-3-hydroxybut-1-en-1-yl]-4-{[4-(methoxymethyl)phenyl]amino}oxolan-2-one)

Structure for NP0195558 (5-[(1e)-3-hydroxybut-1-en-1-yl]-4-{[4-(methoxymethyl)phenyl]amino}oxolan-2-one)

3D Structure for NP0195558 (5-[(1e)-3-hydroxybut-1-en-1-yl]-4-{[4-(methoxymethyl)phenyl]amino}oxolan-2-one)