NP-MRD: Showing NP-Card for (1s,4r,10r)-4,12,12-trimethyl-5-oxatricyclo[8.2.0.0⁴,⁶]dodecan-9-one (NP0195511)

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Record Information

Version

2.0

Created at

2022-09-04 13:23:29 UTC

Updated at

2022-09-04 13:23:29 UTC

NP-MRD ID

NP0195511

Secondary Accession Numbers

None

Natural Product Identification

Common Name

(1s,4r,10r)-4,12,12-trimethyl-5-oxatricyclo[8.2.0.0⁴,⁶]dodecan-9-one

Description

Kobusone belongs to the class of organic compounds known as ketones. These are organic compounds in which a carbonyl group is bonded to two carbon atoms R2C=O (neither R may be a hydrogen atom). Ketones that have one or more alpha-hydrogen atoms undergo keto-enol tautomerization, the tautomer being an enol. (1s,4r,10r)-4,12,12-trimethyl-5-oxatricyclo[8.2.0.0⁴,⁶]dodecan-9-one was first documented in 2005 (PMID: 16038564). Based on a literature review a small amount of articles have been published on Kobusone (PMID: 34320857) (PMID: 23019881).

Structure

MOL 3D MOL SDF PDB SMILES InChI

     RDKit          3D

 38 40  0  0  0  0  0  0  0  0999 V2000
   -2.8093   -0.4178   -1.5957 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4997   -0.2270   -0.1328 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.3461   -1.0079    0.8249 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4780    1.2835    0.1763 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0708    1.2442   -0.3103 C   0  0  1  0  0  0  0  0  0  0  0  0
   -0.0521    1.9891    0.4180 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1908    2.5049    1.5132 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.2916    2.1453   -0.2206 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.3844    1.4873    0.5829 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.0685    0.3710   -0.1244 C   0  0  2  0  0  0  0  0  0  0  0  0
    2.4371    0.0465   -1.3739 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.4165   -0.8586   -0.3250 C   0  0  1  0  0  0  0  0  0  0  0  0
    3.2888   -2.1025   -0.5587 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.1393   -1.1653    0.3731 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0813   -0.9759   -0.5262 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0647   -0.1922    0.2377 C   0  0  2  0  0  0  0  0  0  0  0  0
   -1.9471   -0.2971   -2.2520 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.2431   -1.4145   -1.7658 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5775    0.3259   -1.9378 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.4260   -2.0387    0.4484 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8337   -1.0259    1.8078 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.3780   -0.6033    0.9235 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4913    1.4234    1.2938 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.2070    1.8661   -0.3812 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9788    1.2971   -1.4061 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.4412    3.2375   -0.3511 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.3297    1.7073   -1.2367 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.0314    1.2116    1.6196 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.1485    2.2976    0.7799 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.1952    0.4139   -0.2056 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.9383   -1.9622   -1.4199 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.6758   -3.0181   -0.5727 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.9294   -2.1854    0.3640 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.0694   -2.2368    0.7227 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.0805   -0.5610    1.2912 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5030   -1.9397   -0.8636 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.2424   -0.4527   -1.4733 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9298   -0.1694    1.3297 H   0  0  0  0  0  0  0  0  0  0  0  0
 12 13  1  6
 12 14  1  0
 14 15  1  0
 15 16  1  0
 16  5  1  0
  5  4  1  0
  4  2  1  0
  2  1  1  0
  2  3  1  0
  5  6  1  0
  6  7  2  0
  6  8  1  0
  8  9  1  0
  9 10  1  0
 10 11  1  0
 10 12  1  0
 11 12  1  0
  2 16  1  0
 13 31  1  0
 13 32  1  0
 13 33  1  0
 14 34  1  0
 14 35  1  0
 15 36  1  0
 15 37  1  0
 16 38  1  1
  5 25  1  6
  4 23  1  0
  4 24  1  0
  1 17  1  0
  1 18  1  0
  1 19  1  0
  3 20  1  0
  3 21  1  0
  3 22  1  0
  8 26  1  0
  8 27  1  0
  9 28  1  0
  9 29  1  0
 10 30  1  6
M  END


  Mrv1652309042215232D          

 16 18  0  0  1  0            999 V2000
   -0.2886   -1.7189    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.5253   -1.5842    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.6600   -2.3981    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.3906   -0.7702    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.2045   -0.6355    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    1.6245    0.0745    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.1009    0.7121    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.4027    0.3485    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.1749    0.0582    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.5799   -0.6606    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.2062   -1.1975    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.4281   -1.4715    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    3.8330   -2.1903    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.7905   -1.9951    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.9656   -1.9864    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.3392   -1.4495    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  1  0  0  0  0
  2  4  1  0  0  0  0
  5  4  1  1  0  0  0
  5  6  1  0  0  0  0
  6  7  2  0  0  0  0
  6  8  1  0  0  0  0
  8  9  1  0  0  0  0
  9 10  1  0  0  0  0
 10 11  1  0  0  0  0
 11 12  1  0  0  0  0
 10 12  1  0  0  0  0
 12 13  1  1  0  0  0
 12 14  1  0  0  0  0
 14 15  1  0  0  0  0
 16 15  1  6  0  0  0
  5 16  1  0  0  0  0
  2 16  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0195511

> <DATABASE_NAME>
NP-MRD

> <SMILES>
C[C@@]12CC[C@H]3[C@@H](CC3(C)C)C(=O)CCC1O2

> <INCHI_IDENTIFIER>
InChI=1S/C14H22O2/c1-13(2)8-9-10(13)6-7-14(3)12(16-14)5-4-11(9)15/h9-10,12H,4-8H2,1-3H3/t9-,10+,12?,14-/m1/s1

> <INCHI_KEY>
UETZJEZFLKASPR-RDCSUEHQSA-N

> <FORMULA>
C14H22O2

> <MOLECULAR_WEIGHT>
222.328

> <EXACT_MASS>
222.161979948

> <JCHEM_ACCEPTOR_COUNT>
2

> <JCHEM_ATOM_COUNT>
38

> <JCHEM_AVERAGE_POLARIZABILITY>
25.439535166580498

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
0

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
1

> <JCHEM_IUPAC>
(1S,4R,10R)-4,12,12-trimethyl-5-oxatricyclo[8.2.0.0^{4,6}]dodecan-9-one

> <JCHEM_LOGP>
2.755904054666667

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
3

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA_STRONGEST_ACIDIC>
18.49805561593643

> <JCHEM_PKA_STRONGEST_BASIC>
-4.224184024856662

> <JCHEM_POLAR_SURFACE_AREA>
29.6

> <JCHEM_REFRACTIVITY>
62.554100000000005

> <JCHEM_ROTATABLE_BOND_COUNT>
0

> <JCHEM_RULE_OF_FIVE>
1

> <JCHEM_TRADITIONAL_IUPAC>
(1S,4R,10R)-4,12,12-trimethyl-5-oxatricyclo[8.2.0.0^{4,6}]dodecan-9-one

> <JCHEM_VEBER_RULE>
1

$$$$

HEADER    PROTEIN                                 04-SEP-22   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   04-SEP-22         0                                  
HETATM    1  C   UNK     0      -0.539  -3.209   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0       0.981  -2.957   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0       1.232  -4.476   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0       0.729  -1.438   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0       2.248  -1.186   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0       3.032   0.139   0.000  0.00  0.00           C+0
HETATM    7  O   UNK     0       2.055   1.329   0.000  0.00  0.00           O+0
HETATM    8  C   UNK     0       4.485   0.651   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0       5.927   0.109   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0       6.682  -1.233   0.000  0.00  0.00           C+0
HETATM   11  O   UNK     0       7.852  -2.235   0.000  0.00  0.00           O+0
HETATM   12  C   UNK     0       6.399  -2.747   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0       7.155  -4.088   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0       5.209  -3.724   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0       3.669  -3.708   0.000  0.00  0.00           C+0
HETATM   16  C   UNK     0       2.500  -2.706   0.000  0.00  0.00           C+0
CONECT    1    2                                                            
CONECT    2    1    3    4   16                                             
CONECT    3    2                                                            
CONECT    4    2    5                                                       
CONECT    5    4    6   16                                                  
CONECT    6    5    7    8                                                  
CONECT    7    6                                                            
CONECT    8    6    9                                                       
CONECT    9    8   10                                                       
CONECT   10    9   11   12                                                  
CONECT   11   10   12                                                       
CONECT   12   11   10   13   14                                             
CONECT   13   12                                                            
CONECT   14   12   15                                                       
CONECT   15   14   16                                                       
CONECT   16   15    5    2                                                  
MASTER        0    0    0    0    0    0    0    0   16    0   36    0
END

View in JSmol

Synonyms

Not Available

Chemical Formula

C₁₄H₂₂O₂

Average Mass

222.3280 Da

Monoisotopic Mass

222.16198 Da

IUPAC Name

(1S,4R,10R)-4,12,12-trimethyl-5-oxatricyclo[8.2.0.0^{4,6}]dodecan-9-one

Traditional Name

(1S,4R,10R)-4,12,12-trimethyl-5-oxatricyclo[8.2.0.0^{4,6}]dodecan-9-one

CAS Registry Number

Not Available

SMILES

C[C@@]12CC[C@H]3[C@@H](CC3(C)C)C(=O)CCC1O2

InChI Identifier

InChI=1S/C14H22O2/c1-13(2)8-9-10(13)6-7-14(3)12(16-14)5-4-11(9)15/h9-10,12H,4-8H2,1-3H3/t9-,10+,12?,14-/m1/s1

InChI Key

UETZJEZFLKASPR-RDCSUEHQSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Not Available

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as ketones. These are organic compounds in which a carbonyl group is bonded to two carbon atoms R2C=O (neither R may be a hydrogen atom). Ketones that have one or more alpha-hydrogen atoms undergo keto-enol tautomerization, the tautomer being an enol.

Kingdom

Organic compounds

Super Class

Organic oxygen compounds

Class

Organooxygen compounds

Sub Class

Carbonyl compounds

Direct Parent

Ketones

Alternative Parents

Substituents

Ketone
Oxacycle
Organoheterocyclic compound
Ether
Oxirane
Dialkyl ether
Organic oxide
Hydrocarbon derivative
Aliphatic heteropolycyclic compound

Molecular Framework

Aliphatic heteropolycyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	2.76	ChemAxon
pKa (Strongest Acidic)	18.5	ChemAxon
pKa (Strongest Basic)	-4.2	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	2	ChemAxon
Hydrogen Donor Count	0	ChemAxon
Polar Surface Area	29.6 Å²	ChemAxon
Rotatable Bond Count	0	ChemAxon
Refractivity	62.55 m³·mol⁻¹	ChemAxon
Polarizability	25.44 Å³	ChemAxon
Number of Rings	3	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	Yes	ChemAxon
Veber's Rule	Yes	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

C00012491

Chemspider ID

Not Available

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

129317138

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

Hayashi K, Kanamori T, Yamazoe A, Yamada M, Nozaki H: Gaudichanolides A and B, clerodane diterpenes from Baccharis gaudichaudiana. J Nat Prod. 2005 Jul;68(7):1121-4. doi: 10.1021/np050081i. [PubMed:16038564 ]
Choi JW, Joo JD, In JH, Kim D, Kim Y, Choi ST, Kim JH, Jung HS: The small molecule kobusone can stimulate islet beta-cell replication in vivo. J Int Med Res. 2021 Jul;49(7):3000605211032849. doi: 10.1177/03000605211032849. [PubMed:34320857 ]
Yang L, Qiao L, Xie D, Dai J, Guo S: [Sesquiterpenes and monoterpene from Aquilaria sinensis]. Zhongguo Zhong Yao Za Zhi. 2012 Jul;37(13):1973-6. [PubMed:23019881 ]
LOTUS database [Link]

Showing NP-Card for (1s,4r,10r)-4,12,12-trimethyl-5-oxatricyclo[8.2.0.0⁴,⁶]dodecan-9-one (NP0195511)

MOL for NP0195511 ((1s,4r,10r)-4,12,12-trimethyl-5-oxatricyclo[8.2.0.0⁴,⁶]dodecan-9-one)

3D MOL for NP0195511 ((1s,4r,10r)-4,12,12-trimethyl-5-oxatricyclo[8.2.0.0⁴,⁶]dodecan-9-one)

3D SDF for NP0195511 ((1s,4r,10r)-4,12,12-trimethyl-5-oxatricyclo[8.2.0.0⁴,⁶]dodecan-9-one)

3D-SDF for NP0195511 ((1s,4r,10r)-4,12,12-trimethyl-5-oxatricyclo[8.2.0.0⁴,⁶]dodecan-9-one)

PDB for NP0195511 ((1s,4r,10r)-4,12,12-trimethyl-5-oxatricyclo[8.2.0.0⁴,⁶]dodecan-9-one)

3D PDB for NP0195511 ((1s,4r,10r)-4,12,12-trimethyl-5-oxatricyclo[8.2.0.0⁴,⁶]dodecan-9-one)

SMILES for NP0195511 ((1s,4r,10r)-4,12,12-trimethyl-5-oxatricyclo[8.2.0.0⁴,⁶]dodecan-9-one)

INCHI for NP0195511 ((1s,4r,10r)-4,12,12-trimethyl-5-oxatricyclo[8.2.0.0⁴,⁶]dodecan-9-one)

Structure for NP0195511 ((1s,4r,10r)-4,12,12-trimethyl-5-oxatricyclo[8.2.0.0⁴,⁶]dodecan-9-one)

3D Structure for NP0195511 ((1s,4r,10r)-4,12,12-trimethyl-5-oxatricyclo[8.2.0.0⁴,⁶]dodecan-9-one)