NP-MRD: Showing NP-Card for 4-hydroxy-3-[(4-hydroxy-5-methyl-2-oxochromen-3-yl)methyl]-5-methylchromen-2-one (NP0194427)

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Record Information

Version

2.0

Created at

2022-09-04 12:04:53 UTC

Updated at

2022-09-04 12:04:53 UTC

NP-MRD ID

NP0194427

Secondary Accession Numbers

None

Natural Product Identification

Common Name

4-hydroxy-3-[(4-hydroxy-5-methyl-2-oxochromen-3-yl)methyl]-5-methylchromen-2-one

Description

Gerberinol belongs to the class of organic compounds known as 4-hydroxycoumarins. These are coumarins that contain one or more hydroxyl groups attached to C4-position the coumarin skeleton. Gerberinol is an extremely weak basic (essentially neutral) compound (based on its pKa). Outside of the human body, Gerberinol has been detected, but not quantified in, fruits. 4-hydroxy-3-[(4-hydroxy-5-methyl-2-oxochromen-3-yl)methyl]-5-methylchromen-2-one is found in Diospyros crassiflora and Diospyros kaki. This could make gerberinol a potential biomarker for the consumption of these foods.

Structure

MOL 3D MOL SDF PDB SMILES InChI


  Mrv0541 05061307032D          

 27 30  0  0  0  0            999 V2000
    7.1571    3.2976    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.1558    2.0601    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.7282    4.9476    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4413   -0.0024    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.4426    4.5351    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4413    0.8226    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.0137    4.5351    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.1558   -0.4149    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.0137    1.2351    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.4426    3.7101    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.1558    1.2351    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.0137    2.0601    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.2992    0.8226    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.0137    3.7101    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.8703   -0.0024    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.7282    3.2976    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.8703    0.8226    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.7282    2.4726    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.5847    1.2351    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.2992    2.4726    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.2992   -0.0024    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.4426    2.0601    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.0998    1.9025    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.5847    2.0601    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.0137   -0.4149    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.2992    3.2976    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.5847   -0.4149    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  5  3  2  0  0  0  0
  6  4  2  0  0  0  0
  7  3  1  0  0  0  0
  8  4  1  0  0  0  0
 10  1  1  0  0  0  0
 10  5  1  0  0  0  0
 11  2  1  0  0  0  0
 11  6  1  0  0  0  0
 12  9  1  0  0  0  0
 13  9  1  0  0  0  0
 14  7  2  0  0  0  0
 15  8  2  0  0  0  0
 16 10  2  0  0  0  0
 16 14  1  0  0  0  0
 17 11  2  0  0  0  0
 17 15  1  0  0  0  0
 18 12  2  0  0  0  0
 18 16  1  0  0  0  0
 19 13  2  0  0  0  0
 19 17  1  0  0  0  0
 20 12  1  0  0  0  0
 21 13  1  0  0  0  0
 22 18  1  0  0  0  0
 23 19  1  0  0  0  0
 24 20  2  0  0  0  0
 25 21  2  0  0  0  0
 26 14  1  0  0  0  0
 26 20  1  0  0  0  0
 27 15  1  0  0  0  0
 27 21  1  0  0  0  0
M  END

     RDKit          3D

 43 46  0  0  0  0  0  0  0  0999 V2000
    3.4899   -2.3721   -0.5124 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.9048   -1.1639    0.2330 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.0581   -1.1969    1.0173 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.4968   -0.1029    1.7307 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.7487    1.0520    1.6468 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.5894    1.0864    0.8587 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.8784    2.1831    0.7780 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.7862    2.2903    0.0638 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.1715    3.4104    0.0520 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.2582    1.2361   -0.6937 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0899    1.4555   -1.5094 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1364    0.7073   -1.2900 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9837    0.7767   -0.2080 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6874    1.5851    0.8455 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.1648    0.0181   -0.1710 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.0104    0.0884    0.9113 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.6719    0.9730    2.0524 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.1899   -0.6792    0.9315 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.5249   -1.5072   -0.1129 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.6802   -1.5786   -1.1964 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5098   -0.8099   -1.2043 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.6872   -0.8557   -2.2197 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5837   -0.1713   -2.2973 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8622   -0.2878   -3.3328 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.9852    0.0763   -0.6267 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.6330   -1.0377   -1.2851 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.1614   -0.0090    0.1523 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.2798   -3.1582   -0.3028 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.5778   -2.2278   -1.6179 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.5568   -2.8285   -0.1783 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.6408   -2.1152    1.0757 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.3942   -0.1276    2.3413 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.0348    1.9534    2.1823 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2242    2.5580   -1.4368 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.3229    1.3943   -2.6252 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9134    2.1447    0.9262 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.5174    0.8418    2.8023 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.7120    2.0504    1.8177 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7829    0.6496    2.6251 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.8365   -0.6020    1.7983 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.4431   -2.0824   -0.0571 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.9144   -2.2225   -2.0397 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.9776   -1.3945   -1.8645 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2 27  2  0
 27 25  1  0
 25 26  1  0
 25 10  2  0
 10 11  1  0
 11 12  1  0
 12 13  2  0
 13 14  1  0
 13 15  1  0
 15 16  2  0
 16 17  1  0
 16 18  1  0
 18 19  2  0
 19 20  1  0
 20 21  2  0
 21 22  1  0
 22 23  1  0
 23 24  2  0
 10  8  1  0
  8  9  2  0
  8  7  1  0
  7  6  1  0
  6  5  2  0
  5  4  1  0
  4  3  2  0
  3  2  1  0
  6 27  1  0
 23 12  1  0
 21 15  1  0
  1 28  1  0
  1 29  1  0
  1 30  1  0
 26 43  1  0
 11 34  1  0
 11 35  1  0
 14 36  1  0
 17 37  1  0
 17 38  1  0
 17 39  1  0
 18 40  1  0
 19 41  1  0
 20 42  1  0
  5 33  1  0
  4 32  1  0
  3 31  1  0
M  END


  Mrv0541 05061307032D          

 27 30  0  0  0  0            999 V2000
    7.1571    3.2976    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.1558    2.0601    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.7282    4.9476    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4413   -0.0024    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.4426    4.5351    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4413    0.8226    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.0137    4.5351    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.1558   -0.4149    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.0137    1.2351    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.4426    3.7101    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.1558    1.2351    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.0137    2.0601    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.2992    0.8226    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.0137    3.7101    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.8703   -0.0024    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.7282    3.2976    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.8703    0.8226    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.7282    2.4726    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.5847    1.2351    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.2992    2.4726    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.2992   -0.0024    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.4426    2.0601    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.0998    1.9025    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.5847    2.0601    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.0137   -0.4149    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.2992    3.2976    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.5847   -0.4149    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  5  3  2  0  0  0  0
  6  4  2  0  0  0  0
  7  3  1  0  0  0  0
  8  4  1  0  0  0  0
 10  1  1  0  0  0  0
 10  5  1  0  0  0  0
 11  2  1  0  0  0  0
 11  6  1  0  0  0  0
 12  9  1  0  0  0  0
 13  9  1  0  0  0  0
 14  7  2  0  0  0  0
 15  8  2  0  0  0  0
 16 10  2  0  0  0  0
 16 14  1  0  0  0  0
 17 11  2  0  0  0  0
 17 15  1  0  0  0  0
 18 12  2  0  0  0  0
 18 16  1  0  0  0  0
 19 13  2  0  0  0  0
 19 17  1  0  0  0  0
 20 12  1  0  0  0  0
 21 13  1  0  0  0  0
 22 18  1  0  0  0  0
 23 19  1  0  0  0  0
 24 20  2  0  0  0  0
 25 21  2  0  0  0  0
 26 14  1  0  0  0  0
 26 20  1  0  0  0  0
 27 15  1  0  0  0  0
 27 21  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0194427

> <DATABASE_NAME>
NP-MRD

> <SMILES>
CC1=C2C(O)=C(CC3=C(O)C4=C(C)C=CC=C4OC3=O)C(=O)OC2=CC=C1

> <INCHI_IDENTIFIER>
InChI=1S/C21H16O6/c1-10-5-3-7-14-16(10)18(22)12(20(24)26-14)9-13-19(23)17-11(2)6-4-8-15(17)27-21(13)25/h3-8,22-23H,9H2,1-2H3

> <INCHI_KEY>
JUCUEMBIORWHSB-UHFFFAOYSA-N

> <FORMULA>
C21H16O6

> <MOLECULAR_WEIGHT>
364.3481

> <EXACT_MASS>
364.094688244

> <JCHEM_ACCEPTOR_COUNT>
4

> <JCHEM_AVERAGE_POLARIZABILITY>
36.3584409984709

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
2

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
4-hydroxy-3-[(4-hydroxy-5-methyl-2-oxo-2H-chromen-3-yl)methyl]-5-methyl-2H-chromen-2-one

> <ALOGPS_LOGP>
2.41

> <JCHEM_LOGP>
-0.5660629678970954

> <ALOGPS_LOGS>
-4.15

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
4

> <JCHEM_PHYSIOLOGICAL_CHARGE>
-1

> <JCHEM_PKA>
10.648019003598115

> <JCHEM_PKA_STRONGEST_ACIDIC>
-11.945737356630083

> <JCHEM_PKA_STRONGEST_BASIC>
-3.1018140215809793

> <JCHEM_POLAR_SURFACE_AREA>
93.06

> <JCHEM_REFRACTIVITY>
99.27519999999997

> <JCHEM_ROTATABLE_BOND_COUNT>
2

> <JCHEM_RULE_OF_FIVE>
1

> <ALOGPS_SOLUBILITY>
2.58e-02 g/l

> <JCHEM_TRADITIONAL_IUPAC>
4-hydroxy-3-[(4-hydroxy-5-methyl-2-oxochromen-3-yl)methyl]-5-methylchromen-2-one

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 06-MAY-13   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   06-MAY-13         0                                  
HETATM    1  C   UNK     0      13.360   6.156   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0       4.024   3.846   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0      10.693   9.236   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0       2.690  -0.004   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0      12.026   8.466   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0       2.690   1.536   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0       9.359   8.466   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0       4.024  -0.774   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0       9.359   2.306   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0      12.026   6.926   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0       4.024   2.306   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0       9.359   3.846   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0       8.025   1.536   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0       9.359   6.926   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0       5.358  -0.004   0.000  0.00  0.00           C+0
HETATM   16  C   UNK     0      10.693   6.156   0.000  0.00  0.00           C+0
HETATM   17  C   UNK     0       5.358   1.536   0.000  0.00  0.00           C+0
HETATM   18  C   UNK     0      10.693   4.616   0.000  0.00  0.00           C+0
HETATM   19  C   UNK     0       6.691   2.306   0.000  0.00  0.00           C+0
HETATM   20  C   UNK     0       8.025   4.616   0.000  0.00  0.00           C+0
HETATM   21  C   UNK     0       8.025  -0.004   0.000  0.00  0.00           C+0
HETATM   22  O   UNK     0      12.026   3.846   0.000  0.00  0.00           O+0
HETATM   23  O   UNK     0       5.786   3.551   0.000  0.00  0.00           O+0
HETATM   24  O   UNK     0       6.691   3.846   0.000  0.00  0.00           O+0
HETATM   25  O   UNK     0       9.359  -0.774   0.000  0.00  0.00           O+0
HETATM   26  O   UNK     0       8.025   6.156   0.000  0.00  0.00           O+0
HETATM   27  O   UNK     0       6.691  -0.774   0.000  0.00  0.00           O+0
CONECT    1   10                                                            
CONECT    2   11                                                            
CONECT    3    5    7                                                       
CONECT    4    6    8                                                       
CONECT    5    3   10                                                       
CONECT    6    4   11                                                       
CONECT    7    3   14                                                       
CONECT    8    4   15                                                       
CONECT    9   12   13                                                       
CONECT   10    1    5   16                                                  
CONECT   11    2    6   17                                                  
CONECT   12    9   18   20                                                  
CONECT   13    9   19   21                                                  
CONECT   14    7   16   26                                                  
CONECT   15    8   17   27                                                  
CONECT   16   10   14   18                                                  
CONECT   17   11   15   19                                                  
CONECT   18   12   16   22                                                  
CONECT   19   13   17   23                                                  
CONECT   20   12   24   26                                                  
CONECT   21   13   25   27                                                  
CONECT   22   18                                                            
CONECT   23   19                                                            
CONECT   24   20                                                            
CONECT   25   21                                                            
CONECT   26   14   20                                                       
CONECT   27   15   21                                                       
MASTER        0    0    0    0    0    0    0    0   27    0   60    0
END

View in JSmol

Synonyms

Value	Source
3,3'-Methylenebis[4-hydroxy-5-methyl-2H-1-benzopyran-2-one], 9ci	HMDB

Chemical Formula

C₂₁H₁₆O₆

Average Mass

364.3481 Da

Monoisotopic Mass

364.09469 Da

IUPAC Name

4-hydroxy-3-[(4-hydroxy-5-methyl-2-oxo-2H-chromen-3-yl)methyl]-5-methyl-2H-chromen-2-one

Traditional Name

4-hydroxy-3-[(4-hydroxy-5-methyl-2-oxochromen-3-yl)methyl]-5-methylchromen-2-one

CAS Registry Number

Not Available

SMILES

CC1=C2C(O)=C(CC3=C(O)C4=C(C)C=CC=C4OC3=O)C(=O)OC2=CC=C1

InChI Identifier

InChI=1S/C21H16O6/c1-10-5-3-7-14-16(10)18(22)12(20(24)26-14)9-13-19(23)17-11(2)6-4-8-15(17)27-21(13)25/h3-8,22-23H,9H2,1-2H3

InChI Key

JUCUEMBIORWHSB-UHFFFAOYSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Diospyros crassiflora	LOTUS Database	35616633
Diospyros kaki	LOTUS Database	35616633

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as 4-hydroxycoumarins. These are coumarins that contain one or more hydroxyl groups attached to C4-position the coumarin skeleton.

Kingdom

Organic compounds

Super Class

Phenylpropanoids and polyketides

Class

Coumarins and derivatives

Sub Class

Hydroxycoumarins

Direct Parent

4-hydroxycoumarins

Alternative Parents

Substituents

4-hydroxycoumarin
Benzopyran
1-benzopyran
Pyranone
Pyran
Benzenoid
Heteroaromatic compound
Vinylogous acid
Lactone
Oxacycle
Organoheterocyclic compound
Organic oxygen compound
Hydrocarbon derivative
Organooxygen compound
Organic oxide
Aromatic heteropolycyclic compound

Molecular Framework

Aromatic heteropolycyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	2.41	ALOGPS
logP	-0.57	ChemAxon
logS	-4.2	ALOGPS
pKa (Strongest Acidic)	-12	ChemAxon
pKa (Strongest Basic)	-3.1	ChemAxon
Physiological Charge	-1	ChemAxon
Hydrogen Acceptor Count	4	ChemAxon
Hydrogen Donor Count	2	ChemAxon
Polar Surface Area	93.06 Å²	ChemAxon
Rotatable Bond Count	2	ChemAxon
Refractivity	99.28 m³·mol⁻¹	ChemAxon
Polarizability	36.36 Å³	ChemAxon
Number of Rings	4	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	No	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

HMDB ID

HMDB0033304

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

FDB011328

KNApSAcK ID

Not Available

Chemspider ID

Not Available

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

54714260

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

LOTUS database [Link]

Showing NP-Card for 4-hydroxy-3-[(4-hydroxy-5-methyl-2-oxochromen-3-yl)methyl]-5-methylchromen-2-one (NP0194427)

MOL for NP0194427 (4-hydroxy-3-[(4-hydroxy-5-methyl-2-oxochromen-3-yl)methyl]-5-methylchromen-2-one)

3D MOL for NP0194427 (4-hydroxy-3-[(4-hydroxy-5-methyl-2-oxochromen-3-yl)methyl]-5-methylchromen-2-one)

3D SDF for NP0194427 (4-hydroxy-3-[(4-hydroxy-5-methyl-2-oxochromen-3-yl)methyl]-5-methylchromen-2-one)

3D-SDF for NP0194427 (4-hydroxy-3-[(4-hydroxy-5-methyl-2-oxochromen-3-yl)methyl]-5-methylchromen-2-one)

PDB for NP0194427 (4-hydroxy-3-[(4-hydroxy-5-methyl-2-oxochromen-3-yl)methyl]-5-methylchromen-2-one)

3D PDB for NP0194427 (4-hydroxy-3-[(4-hydroxy-5-methyl-2-oxochromen-3-yl)methyl]-5-methylchromen-2-one)

SMILES for NP0194427 (4-hydroxy-3-[(4-hydroxy-5-methyl-2-oxochromen-3-yl)methyl]-5-methylchromen-2-one)

INCHI for NP0194427 (4-hydroxy-3-[(4-hydroxy-5-methyl-2-oxochromen-3-yl)methyl]-5-methylchromen-2-one)

Structure for NP0194427 (4-hydroxy-3-[(4-hydroxy-5-methyl-2-oxochromen-3-yl)methyl]-5-methylchromen-2-one)

3D Structure for NP0194427 (4-hydroxy-3-[(4-hydroxy-5-methyl-2-oxochromen-3-yl)methyl]-5-methylchromen-2-one)