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Record Information
Version2.0
Created at2022-09-04 11:56:19 UTC
Updated at2022-09-04 11:56:19 UTC
NP-MRD IDNP0194305
Secondary Accession NumbersNone
Natural Product Identification
Common Name(2r,3r,4s,5s,6s)-2-{[(1r,3as,3bs,7s,9ar,9bs,11ar)-1-[(2r,5r)-5-ethyl-6-methylheptan-2-yl]-9a,11a-dimethyl-1h,2h,3h,3ah,3bh,4h,6h,7h,8h,9h,9bh,10h,11h-cyclopenta[a]phenanthren-7-yl]oxy}-6-(hydroxymethyl)oxane-3,4,5-triol
Description(2R,3R,4S,5S,6S)-2-{[(1S,2R,5S,10S,11S,14R,15R)-14-[(2R,5R)-5-ethyl-6-methylheptan-2-yl]-2,15-dimethyltetracyclo[8.7.0.0²,⁷.0¹¹,¹⁵]Heptadec-7-en-5-yl]oxy}-6-(hydroxymethyl)oxane-3,4,5-triol belongs to the class of organic compounds known as stigmastanes and derivatives. These are sterol lipids with a structure based on the stigmastane skeleton, which consists of a cholestane moiety bearing an ethyl group at the carbon atom C24. (2r,3r,4s,5s,6s)-2-{[(1r,3as,3bs,7s,9ar,9bs,11ar)-1-[(2r,5r)-5-ethyl-6-methylheptan-2-yl]-9a,11a-dimethyl-1h,2h,3h,3ah,3bh,4h,6h,7h,8h,9h,9bh,10h,11h-cyclopenta[a]phenanthren-7-yl]oxy}-6-(hydroxymethyl)oxane-3,4,5-triol is found in Achillea ageratum, Agave americana, Aglaia rubiginosa, Ajania fruticulosa, Alpinia pinnanensis, Alpinia roxburghii, Annona purpurea, Aristolochia kaempferi, Artabotrys hexapetalus, Artemisia minor, Artemisia sieversiana, Begonia nantoensis, Borassus flabellifer, Centaurea jacea, Centrosema pubescens, Chione venosa, Cipadessa baccifera, Clinopodium acinos, Clusia nemorosa, Cryptolepis obtusa, Dioscorea spongiosa, Dryopteris crassirhizoma, Duhaldea cappa, Embelia ribes, Eucalyptus camaldulensis, Euphorbia boetica, Euphorbia macroclada, Ferula persica, Ficus septica, Flemingia macrophylla, Garcinia griffithii, Gentiana lutea, Gnetum pendulum, Hedera nepalensis, Hibiscus taiwanensis, Hydrangea chinensis, Hyptis brevipes, Ipomoea nil, Kadsura heteroclita, Machilus zuihoensis, Macrococculus pomiferus, Magnolia obovata, Melianthus major, Molineria capitulata, Morinda citrifolia, Morus insignis, Myrianthus arboreus, Newbouldia laevis, Ophiorrhiza kuroiwae, Paeonia suffruticosa, Phyllanthus oligospermus, Picramnia latifolia, Piper nigrum, Piper umbellatum, Psidium guajava, Psittacanthus cucullaris, Pteridium aquilinum, Pteris multifida, Punica granatum, Robinsonecio gerberifolius, Salvia aethiopis, Saraca asoca, Smilax china, Spiraea formosana, Stenochlaena palustris, Swartzia brachyrachis, Syzygium aromaticum, Taraxacum formosanum, Tetracentron sinense, Verbena brasiliensis, Viguiera decurrens, Viscum coloratum, Withania somnifera, Xylocarpus granatum and Zanthoxylum armatum. Based on a literature review very few articles have been published on (2R,3R,4S,5S,6S)-2-{[(1S,2R,5S,10S,11S,14R,15R)-14-[(2R,5R)-5-ethyl-6-methylheptan-2-yl]-2,15-dimethyltetracyclo[8.7.0.0²,⁷.0¹¹,¹⁵]Heptadec-7-en-5-yl]oxy}-6-(hydroxymethyl)oxane-3,4,5-triol.
Structure
Thumb
SynonymsNot Available
Chemical FormulaC35H60O6
Average Mass576.8590 Da
Monoisotopic Mass576.43899 Da
IUPAC Name(2R,3R,4S,5S,6S)-2-{[(1S,2R,5S,10S,11S,14R,15R)-14-[(2R,5R)-5-ethyl-6-methylheptan-2-yl]-2,15-dimethyltetracyclo[8.7.0.0^{2,7}.0^{11,15}]heptadec-7-en-5-yl]oxy}-6-(hydroxymethyl)oxane-3,4,5-triol
Traditional Name(2R,3R,4S,5S,6S)-2-{[(1S,2R,5S,10S,11S,14R,15R)-14-[(2R,5R)-5-ethyl-6-methylheptan-2-yl]-2,15-dimethyltetracyclo[8.7.0.0^{2,7}.0^{11,15}]heptadec-7-en-5-yl]oxy}-6-(hydroxymethyl)oxane-3,4,5-triol
CAS Registry NumberNot Available
SMILES
CC[C@H](CC[C@@H](C)[C@H]1CC[C@H]2[C@@H]3CC=C4C[C@H](CC[C@]4(C)[C@H]3CC[C@]12C)O[C@@H]1O[C@@H](CO)[C@@H](O)[C@H](O)[C@H]1O)C(C)C
InChI Identifier
InChI=1S/C35H60O6/c1-7-22(20(2)3)9-8-21(4)26-12-13-27-25-11-10-23-18-24(14-16-34(23,5)28(25)15-17-35(26,27)6)40-33-32(39)31(38)30(37)29(19-36)41-33/h10,20-22,24-33,36-39H,7-9,11-19H2,1-6H3/t21-,22-,24+,25+,26-,27+,28+,29+,30-,31+,32-,33-,34+,35-/m1/s1
InChI KeyNPJICTMALKLTFW-PYOHOBBFSA-N
Experimental Spectra
Not Available
Predicted Spectra
Spectrum TypeDescriptionDepositor IDDepositor OrganizationDepositorDeposition DateView
1D NMR13C NMR Spectrum (1D, 25 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 100 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 252 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 1000 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 50 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 200 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 75 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 300 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 101 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 400 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 126 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 500 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 151 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 600 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 176 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 700 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 201 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 800 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 226 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 900 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
Chemical Shift Submissions
Not Available
Species
Species of Origin
Species NameSourceReference
Achillea ageratumLOTUS Database
Agave americanaLOTUS Database
Aglaia rubiginosaLOTUS Database
Ajania fruticulosaLOTUS Database
Alpinia pinnanensisLOTUS Database
Alpinia roxburghiiLOTUS Database
Annona purpureaLOTUS Database
Aristolochia kaempferiLOTUS Database
Artabotrys hexapetalusLOTUS Database
Artemisia minorLOTUS Database
Artemisia sieversianaLOTUS Database
Begonia nantoensisLOTUS Database
Borassus flabelliferLOTUS Database
Centaurea jaceaLOTUS Database
Centrosema pubescensLOTUS Database
Chione venosaLOTUS Database
Cipadessa bacciferaLOTUS Database
Clinopodium acinosLOTUS Database
Clusia nemorosaLOTUS Database
Cryptolepis obtusaLOTUS Database
Dioscorea spongiosaLOTUS Database
Dryopteris crassirhizomaLOTUS Database
Duhaldea cappaLOTUS Database
Embelia ribesLOTUS Database
Eucalyptus camaldulensisLOTUS Database
Euphorbia boeticaLOTUS Database
Euphorbia macrocladaLOTUS Database
Ferula persicaLOTUS Database
Ficus septicaLOTUS Database
Flemingia macrophyllaLOTUS Database
Garcinia griffithiiLOTUS Database
Gentiana luteaLOTUS Database
Gnetum pendulumLOTUS Database
Hedera nepalensisLOTUS Database
Hibiscus taiwanensisLOTUS Database
Hydrangea chinensisLOTUS Database
Hyptis brevipesLOTUS Database
Ipomoea nilLOTUS Database
Kadsura heteroclitaLOTUS Database
Machilus zuihoensisLOTUS Database
Macrococculus pomiferusLOTUS Database
Magnolia obovataLOTUS Database
Melianthus majorLOTUS Database
Molineria capitulataLOTUS Database
Morinda citrifoliaLOTUS Database
Morus insignisLOTUS Database
Myrianthus arboreusLOTUS Database
Newbouldia laevisLOTUS Database
Ophiorrhiza kuroiwaiLOTUS Database
Paeonia suffruticosaLOTUS Database
Phyllanthus oligospermusLOTUS Database
Picramnia latifoliaLOTUS Database
Piper nigrumLOTUS Database
Piper umbellatumLOTUS Database
Psidium guajavaLOTUS Database
Psittacanthus cucullarisLOTUS Database
Pteridium aquilinumLOTUS Database
Pteris multifidaLOTUS Database
Punica granatumLOTUS Database
Robinsonecio gerberifoliusLOTUS Database
Salvia aethiopisLOTUS Database
Saraca asocaLOTUS Database
Smilax chinaLOTUS Database
Spiraea formosanaLOTUS Database
Stenochlaena palustrisLOTUS Database
Swartzia brachyrachisLOTUS Database
Syzygium aromaticumLOTUS Database
Taraxacum formosanumLOTUS Database
Tetracentron sinenseLOTUS Database
Verbena brasiliensisLOTUS Database
Viguiera decurrensLOTUS Database
Viscum coloratumLOTUS Database
Withania somniferaLOTUS Database
Xylocarpus granatumLOTUS Database
Zanthoxylum armatumLOTUS Database
Chemical Taxonomy
Description Belongs to the class of organic compounds known as stigmastanes and derivatives. These are sterol lipids with a structure based on the stigmastane skeleton, which consists of a cholestane moiety bearing an ethyl group at the carbon atom C24.
KingdomOrganic compounds
Super ClassLipids and lipid-like molecules
ClassSteroids and steroid derivatives
Sub ClassStigmastanes and derivatives
Direct ParentStigmastanes and derivatives
Alternative Parents
Substituents
  • C24-propyl-sterol-skeleton
  • Triterpenoid
  • Stigmastane-skeleton
  • Steroidal glycoside
  • Delta-5-steroid
  • Hexose monosaccharide
  • Glycosyl compound
  • O-glycosyl compound
  • Oxane
  • Monosaccharide
  • Secondary alcohol
  • Polyol
  • Oxacycle
  • Acetal
  • Organoheterocyclic compound
  • Primary alcohol
  • Organooxygen compound
  • Alcohol
  • Hydrocarbon derivative
  • Organic oxygen compound
  • Aliphatic heteropolycyclic compound
Molecular FrameworkAliphatic heteropolycyclic compounds
External DescriptorsNot Available
Physical Properties
StateNot Available
Experimental Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Predicted Properties
PropertyValueSource
logP6.07ChemAxon
pKa (Strongest Acidic)12.21ChemAxon
pKa (Strongest Basic)-3ChemAxon
Physiological Charge0ChemAxon
Hydrogen Acceptor Count6ChemAxon
Hydrogen Donor Count4ChemAxon
Polar Surface Area99.38 ŲChemAxon
Rotatable Bond Count9ChemAxon
Refractivity162.18 m³·mol⁻¹ChemAxon
Polarizability70.11 ųChemAxon
Number of Rings5ChemAxon
BioavailabilityNoChemAxon
Rule of FiveNoChemAxon
Ghose FilterNoChemAxon
Veber's RuleNoChemAxon
MDDR-like RuleYesChemAxon
HMDB IDNot Available
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FoodDB IDNot Available
KNApSAcK IDNot Available
Chemspider IDNot Available
KEGG Compound IDNot Available
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem Compound154496016
PDB IDNot Available
ChEBI IDNot Available
Good Scents IDNot Available
References
General References
  1. LOTUS database [Link]