NP-MRD: Showing NP-Card for 2-[(1z,2r,3s,4s)-4-hydroxy-3-[(3e,6r,7e)-6-hydroxy-4,8,12-trimethyltrideca-3,7,11-trien-1-yl]-3-(hydroxymethyl)-2-(3-hydroxypropyl)-4-methylcyclohexylidene]propanal (NP0193774)

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Record Information

Version

2.0

Created at

2022-09-04 11:19:00 UTC

Updated at

2022-09-04 11:19:00 UTC

NP-MRD ID

NP0193774

Secondary Accession Numbers

None

Natural Product Identification

Common Name

2-[(1z,2r,3s,4s)-4-hydroxy-3-[(3e,6r,7e)-6-hydroxy-4,8,12-trimethyltrideca-3,7,11-trien-1-yl]-3-(hydroxymethyl)-2-(3-hydroxypropyl)-4-methylcyclohexylidene]propanal

Description

2-[(1Z,2R,3S,4S)-4-hydroxy-3-[(3E,6R,7E)-6-hydroxy-4,8,12-trimethyltrideca-3,7,11-trien-1-yl]-3-(hydroxymethyl)-2-(3-hydroxypropyl)-4-methylcyclohexylidene]propanal belongs to the class of organic compounds known as sesterterpenoids. These are terpenes composed of five consecutive isoprene units. 2-[(1z,2r,3s,4s)-4-hydroxy-3-[(3e,6r,7e)-6-hydroxy-4,8,12-trimethyltrideca-3,7,11-trien-1-yl]-3-(hydroxymethyl)-2-(3-hydroxypropyl)-4-methylcyclohexylidene]propanal is found in Iris versicolor. Based on a literature review very few articles have been published on 2-[(1Z,2R,3S,4S)-4-hydroxy-3-[(3E,6R,7E)-6-hydroxy-4,8,12-trimethyltrideca-3,7,11-trien-1-yl]-3-(hydroxymethyl)-2-(3-hydroxypropyl)-4-methylcyclohexylidene]propanal.

Structure

MOL 3D MOL SDF PDB SMILES InChI


  Mrv1652309042213192D          

 35 35  0  0  1  0            999 V2000
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M  END

     RDKit          3D

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M  END


  Mrv1652309042213192D          

 35 35  0  0  1  0            999 V2000
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    3.5724    2.0625    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.4289   -0.0000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.1434   -0.4125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.1434   -1.2375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.8579   -0.0000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.5724   -0.4125    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.7145   -0.4125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0000    0.0000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0000    0.8250    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   -0.8245    0.8538    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4372    1.5246    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  1  0  0  0  0
  2  4  2  0  0  0  0
  4  5  1  0  0  0  0
  5  6  1  0  0  0  0
  6  7  1  0  0  0  0
  7  8  1  0  0  0  0
  7  9  2  0  0  0  0
  9 10  1  0  0  0  0
 10 11  1  6  0  0  0
 10 12  1  0  0  0  0
 12 13  1  0  0  0  0
 13 14  1  0  0  0  0
 13 15  2  0  0  0  0
 15 16  1  0  0  0  0
 16 17  1  0  0  0  0
 18 17  1  1  0  0  0
 18 19  1  6  0  0  0
 19 20  1  0  0  0  0
 18 21  1  0  0  0  0
 21 22  1  6  0  0  0
 22 23  1  0  0  0  0
 23 24  1  0  0  0  0
 24 25  1  0  0  0  0
 21 26  1  0  0  0  0
 26 27  2  0  0  0  0
 27 28  1  0  0  0  0
 27 29  1  0  0  0  0
 29 30  2  0  0  0  0
 26 31  1  0  0  0  0
 31 32  1  0  0  0  0
 32 33  1  0  0  0  0
 18 33  1  0  0  0  0
 33 34  1  1  0  0  0
 33 35  1  6  0  0  0
M  END
> <DATABASE_ID>
NP0193774

> <DATABASE_NAME>
NP-MRD

> <SMILES>
CC(C)=CCC\C(C)=C\[C@H](O)C\C(C)=C\CC[C@@]1(CO)[C@H](CCCO)\C(CC[C@]1(C)O)=C(\C)C=O

> <INCHI_IDENTIFIER>
InChI=1S/C30H50O5/c1-22(2)10-7-11-23(3)18-26(34)19-24(4)12-8-15-30(21-33)28(13-9-17-31)27(25(5)20-32)14-16-29(30,6)35/h10,12,18,20,26,28,31,33-35H,7-9,11,13-17,19,21H2,1-6H3/b23-18+,24-12+,27-25-/t26-,28+,29-,30+/m0/s1

> <INCHI_KEY>
ABQSCSIGRMJZCY-POYFKAEMSA-N

> <FORMULA>
C30H50O5

> <MOLECULAR_WEIGHT>
490.725

> <EXACT_MASS>
490.36582471

> <JCHEM_ACCEPTOR_COUNT>
5

> <JCHEM_ATOM_COUNT>
85

> <JCHEM_AVERAGE_POLARIZABILITY>
59.67943861604442

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
4

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
2-[(1Z,2R,3S,4S)-4-hydroxy-3-[(3E,6R,7E)-6-hydroxy-4,8,12-trimethyltrideca-3,7,11-trien-1-yl]-3-(hydroxymethyl)-2-(3-hydroxypropyl)-4-methylcyclohexylidene]propanal

> <JCHEM_LOGP>
4.113728116999999

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
1

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA>
15.209377606197897

> <JCHEM_PKA_STRONGEST_ACIDIC>
14.357620908485508

> <JCHEM_PKA_STRONGEST_BASIC>
-1.2892541829730226

> <JCHEM_POLAR_SURFACE_AREA>
97.99

> <JCHEM_REFRACTIVITY>
148.23409999999998

> <JCHEM_ROTATABLE_BOND_COUNT>
14

> <JCHEM_RULE_OF_FIVE>
1

> <JCHEM_TRADITIONAL_IUPAC>
2-[(1Z,2R,3S,4S)-4-hydroxy-3-[(3E,6R,7E)-6-hydroxy-4,8,12-trimethyltrideca-3,7,11-trien-1-yl]-3-(hydroxymethyl)-2-(3-hydroxypropyl)-4-methylcyclohexylidene]propanal

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 04-SEP-22   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   04-SEP-22         0                                  
HETATM    1  C   UNK     0      13.276  12.393   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0      12.286  11.213   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0      12.813   9.766   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0      10.769  11.480   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0       9.780  10.301   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0       8.263  10.568   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0       7.273   9.388   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0       7.800   7.941   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0       5.756   9.656   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0       4.767   8.476   0.000  0.00  0.00           C+0
HETATM   11  O   UNK     0       5.293   7.029   0.000  0.00  0.00           O+0
HETATM   12  C   UNK     0       3.250   8.743   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0       2.260   7.564   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0       0.743   7.831   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0       2.787   6.117   0.000  0.00  0.00           C+0
HETATM   16  C   UNK     0       1.797   4.937   0.000  0.00  0.00           C+0
HETATM   17  C   UNK     0       2.324   3.490   0.000  0.00  0.00           C+0
HETATM   18  C   UNK     0       1.334   2.310   0.000  0.00  0.00           C+0
HETATM   19  C   UNK     0       0.344   3.490   0.000  0.00  0.00           C+0
HETATM   20  O   UNK     0       0.870   4.937   0.000  0.00  0.00           O+0
HETATM   21  C   UNK     0       2.667   1.540   0.000  0.00  0.00           C+0
HETATM   22  C   UNK     0       4.001   2.310   0.000  0.00  0.00           C+0
HETATM   23  C   UNK     0       4.001   3.850   0.000  0.00  0.00           C+0
HETATM   24  C   UNK     0       5.335   4.620   0.000  0.00  0.00           C+0
HETATM   25  O   UNK     0       6.668   3.850   0.000  0.00  0.00           O+0
HETATM   26  C   UNK     0       2.667  -0.000   0.000  0.00  0.00           C+0
HETATM   27  C   UNK     0       4.001  -0.770   0.000  0.00  0.00           C+0
HETATM   28  C   UNK     0       4.001  -2.310   0.000  0.00  0.00           C+0
HETATM   29  C   UNK     0       5.335  -0.000   0.000  0.00  0.00           C+0
HETATM   30  O   UNK     0       6.668  -0.770   0.000  0.00  0.00           O+0
HETATM   31  C   UNK     0       1.334  -0.770   0.000  0.00  0.00           C+0
HETATM   32  C   UNK     0       0.000   0.000   0.000  0.00  0.00           C+0
HETATM   33  C   UNK     0       0.000   1.540   0.000  0.00  0.00           C+0
HETATM   34  C   UNK     0      -1.539   1.594   0.000  0.00  0.00           C+0
HETATM   35  O   UNK     0      -0.816   2.846   0.000  0.00  0.00           O+0
CONECT    1    2                                                            
CONECT    2    1    3    4                                                  
CONECT    3    2                                                            
CONECT    4    2    5                                                       
CONECT    5    4    6                                                       
CONECT    6    5    7                                                       
CONECT    7    6    8    9                                                  
CONECT    8    7                                                            
CONECT    9    7   10                                                       
CONECT   10    9   11   12                                                  
CONECT   11   10                                                            
CONECT   12   10   13                                                       
CONECT   13   12   14   15                                                  
CONECT   14   13                                                            
CONECT   15   13   16                                                       
CONECT   16   15   17                                                       
CONECT   17   16   18                                                       
CONECT   18   17   19   21   33                                             
CONECT   19   18   20                                                       
CONECT   20   19                                                            
CONECT   21   18   22   26                                                  
CONECT   22   21   23                                                       
CONECT   23   22   24                                                       
CONECT   24   23   25                                                       
CONECT   25   24                                                            
CONECT   26   21   27   31                                                  
CONECT   27   26   28   29                                                  
CONECT   28   27                                                            
CONECT   29   27   30                                                       
CONECT   30   29                                                            
CONECT   31   26   32                                                       
CONECT   32   31   33                                                       
CONECT   33   32   18   34   35                                             
CONECT   34   33                                                            
CONECT   35   33                                                            
MASTER        0    0    0    0    0    0    0    0   35    0   70    0
END

View in JSmol

Synonyms

Not Available

Chemical Formula

C₃₀H₅₀O₅

Average Mass

490.7250 Da

Monoisotopic Mass

490.36582 Da

IUPAC Name

Not Available

Traditional Name

Not Available

CAS Registry Number

Not Available

SMILES

CC(C)=CCC\C(C)=C\[C@H](O)C\C(C)=C\CC[C@@]1(CO)[C@H](CCCO)\C(CC[C@]1(C)O)=C(\C)C=O

InChI Identifier

InChI=1S/C30H50O5/c1-22(2)10-7-11-23(3)18-26(34)19-24(4)12-8-15-30(21-33)28(13-9-17-31)27(25(5)20-32)14-16-29(30,6)35/h10,12,18,20,26,28,31,33-35H,7-9,11,13-17,19,21H2,1-6H3/b23-18+,24-12+,27-25-/t26-,28+,29-,30+/m0/s1

InChI Key

ABQSCSIGRMJZCY-POYFKAEMSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Iris versicolor	LOTUS Database	35616633

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as sesterterpenoids. These are terpenes composed of five consecutive isoprene units.

Kingdom

Organic compounds

Super Class

Lipids and lipid-like molecules

Class

Prenol lipids

Sub Class

Sesterterpenoids

Direct Parent

Sesterterpenoids

Alternative Parents

Substituents

Sesterterpenoid
Long chain fatty alcohol
Fatty alcohol
Fatty acyl
Alpha,beta-unsaturated aldehyde
Cyclic alcohol
Enal
Tertiary alcohol
Secondary alcohol
Alcohol
Organooxygen compound
Primary alcohol
Hydrocarbon derivative
Organic oxide
Carbonyl group
Organic oxygen compound
Aldehyde
Aliphatic homomonocyclic compound

Molecular Framework

Aliphatic homomonocyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

9082376

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

10907117

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

LOTUS database [Link]

Showing NP-Card for 2-[(1z,2r,3s,4s)-4-hydroxy-3-[(3e,6r,7e)-6-hydroxy-4,8,12-trimethyltrideca-3,7,11-trien-1-yl]-3-(hydroxymethyl)-2-(3-hydroxypropyl)-4-methylcyclohexylidene]propanal (NP0193774)

MOL for NP0193774 (2-[(1z,2r,3s,4s)-4-hydroxy-3-[(3e,6r,7e)-6-hydroxy-4,8,12-trimethyltrideca-3,7,11-trien-1-yl]-3-(hydroxymethyl)-2-(3-hydroxypropyl)-4-methylcyclohexylidene]propanal)

3D MOL for NP0193774 (2-[(1z,2r,3s,4s)-4-hydroxy-3-[(3e,6r,7e)-6-hydroxy-4,8,12-trimethyltrideca-3,7,11-trien-1-yl]-3-(hydroxymethyl)-2-(3-hydroxypropyl)-4-methylcyclohexylidene]propanal)

3D SDF for NP0193774 (2-[(1z,2r,3s,4s)-4-hydroxy-3-[(3e,6r,7e)-6-hydroxy-4,8,12-trimethyltrideca-3,7,11-trien-1-yl]-3-(hydroxymethyl)-2-(3-hydroxypropyl)-4-methylcyclohexylidene]propanal)

3D-SDF for NP0193774 (2-[(1z,2r,3s,4s)-4-hydroxy-3-[(3e,6r,7e)-6-hydroxy-4,8,12-trimethyltrideca-3,7,11-trien-1-yl]-3-(hydroxymethyl)-2-(3-hydroxypropyl)-4-methylcyclohexylidene]propanal)

PDB for NP0193774 (2-[(1z,2r,3s,4s)-4-hydroxy-3-[(3e,6r,7e)-6-hydroxy-4,8,12-trimethyltrideca-3,7,11-trien-1-yl]-3-(hydroxymethyl)-2-(3-hydroxypropyl)-4-methylcyclohexylidene]propanal)

3D PDB for NP0193774 (2-[(1z,2r,3s,4s)-4-hydroxy-3-[(3e,6r,7e)-6-hydroxy-4,8,12-trimethyltrideca-3,7,11-trien-1-yl]-3-(hydroxymethyl)-2-(3-hydroxypropyl)-4-methylcyclohexylidene]propanal)

SMILES for NP0193774 (2-[(1z,2r,3s,4s)-4-hydroxy-3-[(3e,6r,7e)-6-hydroxy-4,8,12-trimethyltrideca-3,7,11-trien-1-yl]-3-(hydroxymethyl)-2-(3-hydroxypropyl)-4-methylcyclohexylidene]propanal)

INCHI for NP0193774 (2-[(1z,2r,3s,4s)-4-hydroxy-3-[(3e,6r,7e)-6-hydroxy-4,8,12-trimethyltrideca-3,7,11-trien-1-yl]-3-(hydroxymethyl)-2-(3-hydroxypropyl)-4-methylcyclohexylidene]propanal)

Structure for NP0193774 (2-[(1z,2r,3s,4s)-4-hydroxy-3-[(3e,6r,7e)-6-hydroxy-4,8,12-trimethyltrideca-3,7,11-trien-1-yl]-3-(hydroxymethyl)-2-(3-hydroxypropyl)-4-methylcyclohexylidene]propanal)

3D Structure for NP0193774 (2-[(1z,2r,3s,4s)-4-hydroxy-3-[(3e,6r,7e)-6-hydroxy-4,8,12-trimethyltrideca-3,7,11-trien-1-yl]-3-(hydroxymethyl)-2-(3-hydroxypropyl)-4-methylcyclohexylidene]propanal)