NP-MRD: Showing NP-Card for (1r,2s,4as,4br,7r,8s,8ar,10as)-8-(1h-indol-3-ylmethyl)-1,4b,7,8,10a-pentamethyl-decahydro-1h-phenanthren-2-ol (NP0193645)

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Record Information

Version

2.0

Created at

2022-09-04 11:08:53 UTC

Updated at

2022-09-04 11:08:54 UTC

NP-MRD ID

NP0193645

Secondary Accession Numbers

None

Natural Product Identification

Common Name

(1r,2s,4as,4br,7r,8s,8ar,10as)-8-(1h-indol-3-ylmethyl)-1,4b,7,8,10a-pentamethyl-decahydro-1h-phenanthren-2-ol

Description

SCHEMBL9595870 belongs to the class of organic compounds known as colensane and clerodane diterpenoids. These are diterpenoids with a structure based on the clerodane or the colensane skeleton. Clerodanes arise from labdanes by two methyl migrations. (1r,2s,4as,4br,7r,8s,8ar,10as)-8-(1h-indol-3-ylmethyl)-1,4b,7,8,10a-pentamethyl-decahydro-1h-phenanthren-2-ol is found in Aspergillus sulphureus. Based on a literature review very few articles have been published on SCHEMBL9595870.

Structure

MOL 3D MOL SDF PDB SMILES InChI


  Mrv1652309042213092D          

 30 34  0  0  1  0            999 V2000
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    3.6020   -0.3020    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
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    2.7770    1.1270    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.3645    0.4125    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
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M  END

     RDKit          3D

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M  END


  Mrv1652309042213092D          

 30 34  0  0  1  0            999 V2000
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M  END
> <DATABASE_ID>
NP0193645

> <DATABASE_NAME>
NP-MRD

> <SMILES>
C[C@@H]1CC[C@]2(C)[C@H](CC[C@]3(C)[C@@H](C)[C@@H](O)CC[C@@H]23)[C@@]1(C)CC1=CNC2=CC=CC=C12

> <INCHI_IDENTIFIER>
InChI=1S/C28H41NO/c1-18-12-14-27(4)24-11-10-23(30)19(2)26(24,3)15-13-25(27)28(18,5)16-20-17-29-22-9-7-6-8-21(20)22/h6-9,17-19,23-25,29-30H,10-16H2,1-5H3/t18-,19+,23+,24-,25+,26-,27+,28+/m1/s1

> <INCHI_KEY>
AOYNVKNXGQEQEA-MEZXNFOZSA-N

> <FORMULA>
C28H41NO

> <MOLECULAR_WEIGHT>
407.642

> <EXACT_MASS>
407.318814944

> <JCHEM_ACCEPTOR_COUNT>
1

> <JCHEM_ATOM_COUNT>
71

> <JCHEM_AVERAGE_POLARIZABILITY>
49.39338821194387

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
2

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
(1R,2S,4aS,4bR,7R,8S,8aR,10aS)-8-[(1H-indol-3-yl)methyl]-1,4b,7,8,10a-pentamethyl-tetradecahydrophenanthren-2-ol

> <JCHEM_LOGP>
6.795879712666665

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
5

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA>
19.21533380318753

> <JCHEM_PKA_STRONGEST_ACIDIC>
17.249306626086312

> <JCHEM_PKA_STRONGEST_BASIC>
-0.9550129944857736

> <JCHEM_POLAR_SURFACE_AREA>
36.019999999999996

> <JCHEM_REFRACTIVITY>
125.04609999999997

> <JCHEM_ROTATABLE_BOND_COUNT>
2

> <JCHEM_RULE_OF_FIVE>
0

> <JCHEM_TRADITIONAL_IUPAC>
(1R,2S,4aS,4bR,7R,8S,8aR,10aS)-8-(1H-indol-3-ylmethyl)-1,4b,7,8,10a-pentamethyl-decahydro-1H-phenanthren-2-ol

> <JCHEM_VEBER_RULE>
1

$$$$

HEADER    PROTEIN                                 04-SEP-22   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   04-SEP-22         0                                  
HETATM    1  C   UNK     0       7.494  -1.897   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0       6.724  -0.564   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0       7.494   0.770   0.000  0.00  0.00           C+0
HETATM    4  O   UNK     0       9.034   0.770   0.000  0.00  0.00           O+0
HETATM    5  C   UNK     0       6.724   2.104   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0       5.184   2.104   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0       4.414   0.770   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0       5.184  -0.564   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0       5.954  -1.897   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0       4.414  -1.897   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0       2.874  -1.897   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0       2.104  -0.564   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0       0.564  -0.564   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0       0.831  -2.080   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0      -0.883  -1.090   0.000  0.00  0.00           C+0
HETATM   16  C   UNK     0      -1.151  -2.607   0.000  0.00  0.00           C+0
HETATM   17  C   UNK     0      -0.081  -3.715   0.000  0.00  0.00           C+0
HETATM   18  N   UNK     0      -0.804  -5.075   0.000  0.00  0.00           N+0
HETATM   19  C   UNK     0      -2.321  -4.807   0.000  0.00  0.00           C+0
HETATM   20  C   UNK     0      -3.534  -5.755   0.000  0.00  0.00           C+0
HETATM   21  C   UNK     0      -4.962  -5.178   0.000  0.00  0.00           C+0
HETATM   22  C   UNK     0      -5.176  -3.653   0.000  0.00  0.00           C+0
HETATM   23  C   UNK     0      -3.963  -2.705   0.000  0.00  0.00           C+0
HETATM   24  C   UNK     0      -2.535  -3.282   0.000  0.00  0.00           C+0
HETATM   25  C   UNK     0      -0.206   0.770   0.000  0.00  0.00           C+0
HETATM   26  C   UNK     0      -1.746   0.770   0.000  0.00  0.00           C+0
HETATM   27  C   UNK     0       0.564   2.104   0.000  0.00  0.00           C+0
HETATM   28  C   UNK     0       2.104   2.104   0.000  0.00  0.00           C+0
HETATM   29  C   UNK     0       2.874   0.770   0.000  0.00  0.00           C+0
HETATM   30  C   UNK     0       3.644   2.104   0.000  0.00  0.00           C+0
CONECT    1    2                                                            
CONECT    2    1    3    8                                                  
CONECT    3    2    4    5                                                  
CONECT    4    3                                                            
CONECT    5    3    6                                                       
CONECT    6    5    7                                                       
CONECT    7    6    8   29                                                  
CONECT    8    7    2    9   10                                             
CONECT    9    8                                                            
CONECT   10    8   11                                                       
CONECT   11   10   12                                                       
CONECT   12   11   13   29                                                  
CONECT   13   12   14   15   25                                             
CONECT   14   13                                                            
CONECT   15   13   16                                                       
CONECT   16   15   17   24                                                  
CONECT   17   16   18                                                       
CONECT   18   17   19                                                       
CONECT   19   18   20   24                                                  
CONECT   20   19   21                                                       
CONECT   21   20   22                                                       
CONECT   22   21   23                                                       
CONECT   23   22   24                                                       
CONECT   24   23   16   19                                                  
CONECT   25   13   26   27                                                  
CONECT   26   25                                                            
CONECT   27   25   28                                                       
CONECT   28   27   29                                                       
CONECT   29   28    7   12   30                                             
CONECT   30   29                                                            
MASTER        0    0    0    0    0    0    0    0   30    0   68    0
END

View in JSmol

Synonyms

Not Available

Chemical Formula

C₂₈H₄₁NO

Average Mass

407.6420 Da

Monoisotopic Mass

407.31881 Da

IUPAC Name

(1R,2S,4aS,4bR,7R,8S,8aR,10aS)-8-[(1H-indol-3-yl)methyl]-1,4b,7,8,10a-pentamethyl-tetradecahydrophenanthren-2-ol

Traditional Name

(1R,2S,4aS,4bR,7R,8S,8aR,10aS)-8-(1H-indol-3-ylmethyl)-1,4b,7,8,10a-pentamethyl-decahydro-1H-phenanthren-2-ol

CAS Registry Number

Not Available

SMILES

C[C@@H]1CC[C@]2(C)[C@H](CC[C@]3(C)[C@@H](C)[C@@H](O)CC[C@@H]23)[C@@]1(C)CC1=CNC2=CC=CC=C12

InChI Identifier

InChI=1S/C28H41NO/c1-18-12-14-27(4)24-11-10-23(30)19(2)26(24,3)15-13-25(27)28(18,5)16-20-17-29-22-9-7-6-8-21(20)22/h6-9,17-19,23-25,29-30H,10-16H2,1-5H3/t18-,19+,23+,24-,25+,26-,27+,28+/m1/s1

InChI Key

AOYNVKNXGQEQEA-MEZXNFOZSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Aspergillus sulphureus	LOTUS Database	35616633

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as colensane and clerodane diterpenoids. These are diterpenoids with a structure based on the clerodane or the colensane skeleton. Clerodanes arise from labdanes by two methyl migrations.

Kingdom

Organic compounds

Super Class

Lipids and lipid-like molecules

Class

Prenol lipids

Sub Class

Diterpenoids

Direct Parent

Colensane and clerodane diterpenoids

Alternative Parents

Substituents

Clerodane diterpenoid
Hydrophenanthrene
Phenanthrene
3-alkylindole
Indole
Indole or derivatives
Substituted pyrrole
Benzenoid
Heteroaromatic compound
Pyrrole
Cyclic alcohol
Secondary alcohol
Azacycle
Organoheterocyclic compound
Alcohol
Hydrocarbon derivative
Organooxygen compound
Organonitrogen compound
Organopnictogen compound
Organic oxygen compound
Organic nitrogen compound
Aromatic heteropolycyclic compound

Molecular Framework

Aromatic heteropolycyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	6.8	ChemAxon
pKa (Strongest Acidic)	17.25	ChemAxon
pKa (Strongest Basic)	-0.96	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	1	ChemAxon
Hydrogen Donor Count	2	ChemAxon
Polar Surface Area	36.02 Å²	ChemAxon
Rotatable Bond Count	2	ChemAxon
Refractivity	125.05 m³·mol⁻¹	ChemAxon
Polarizability	49.39 Å³	ChemAxon
Number of Rings	5	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	No	ChemAxon
Ghose Filter	No	ChemAxon
Veber's Rule	Yes	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

10249643

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

21610068

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

LOTUS database [Link]

Showing NP-Card for (1r,2s,4as,4br,7r,8s,8ar,10as)-8-(1h-indol-3-ylmethyl)-1,4b,7,8,10a-pentamethyl-decahydro-1h-phenanthren-2-ol (NP0193645)

MOL for NP0193645 ((1r,2s,4as,4br,7r,8s,8ar,10as)-8-(1h-indol-3-ylmethyl)-1,4b,7,8,10a-pentamethyl-decahydro-1h-phenanthren-2-ol)

3D MOL for NP0193645 ((1r,2s,4as,4br,7r,8s,8ar,10as)-8-(1h-indol-3-ylmethyl)-1,4b,7,8,10a-pentamethyl-decahydro-1h-phenanthren-2-ol)

3D SDF for NP0193645 ((1r,2s,4as,4br,7r,8s,8ar,10as)-8-(1h-indol-3-ylmethyl)-1,4b,7,8,10a-pentamethyl-decahydro-1h-phenanthren-2-ol)

3D-SDF for NP0193645 ((1r,2s,4as,4br,7r,8s,8ar,10as)-8-(1h-indol-3-ylmethyl)-1,4b,7,8,10a-pentamethyl-decahydro-1h-phenanthren-2-ol)

PDB for NP0193645 ((1r,2s,4as,4br,7r,8s,8ar,10as)-8-(1h-indol-3-ylmethyl)-1,4b,7,8,10a-pentamethyl-decahydro-1h-phenanthren-2-ol)

3D PDB for NP0193645 ((1r,2s,4as,4br,7r,8s,8ar,10as)-8-(1h-indol-3-ylmethyl)-1,4b,7,8,10a-pentamethyl-decahydro-1h-phenanthren-2-ol)

SMILES for NP0193645 ((1r,2s,4as,4br,7r,8s,8ar,10as)-8-(1h-indol-3-ylmethyl)-1,4b,7,8,10a-pentamethyl-decahydro-1h-phenanthren-2-ol)

INCHI for NP0193645 ((1r,2s,4as,4br,7r,8s,8ar,10as)-8-(1h-indol-3-ylmethyl)-1,4b,7,8,10a-pentamethyl-decahydro-1h-phenanthren-2-ol)

Structure for NP0193645 ((1r,2s,4as,4br,7r,8s,8ar,10as)-8-(1h-indol-3-ylmethyl)-1,4b,7,8,10a-pentamethyl-decahydro-1h-phenanthren-2-ol)

3D Structure for NP0193645 ((1r,2s,4as,4br,7r,8s,8ar,10as)-8-(1h-indol-3-ylmethyl)-1,4b,7,8,10a-pentamethyl-decahydro-1h-phenanthren-2-ol)