NP-MRD: Showing NP-Card for methyl 5-(11-oxododecyl)pyridine-2-carboxylate (NP0193573)

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Record Information

Version

2.0

Created at

2022-09-04 11:03:24 UTC

Updated at

2022-09-04 11:03:24 UTC

NP-MRD ID

NP0193573

Secondary Accession Numbers

None

Natural Product Identification

Common Name

methyl 5-(11-oxododecyl)pyridine-2-carboxylate

Description

Penicolinate E belongs to the class of organic compounds known as 5-alkyl-2-carboxypyrimidines. These are pyrimidine-2-carboxylic acids that carry an alkyl group at the 5-position of the pyridine ring. Based on a literature review very few articles have been published on Penicolinate E.

Structure

MOL 3D MOL SDF PDB SMILES InChI

     RDKit          3D

 52 52  0  0  0  0  0  0  0  0999 V2000
    9.5390    0.5790    0.9763 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.1477    0.6131    0.6777 O   0  0  0  0  0  0  0  0  0  0  0  0
    7.4693   -0.4769    0.1923 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.0504   -1.5605   -0.0113 O   0  0  0  0  0  0  0  0  0  0  0  0
    6.0449   -0.3721   -0.0920 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.4157    0.8232    0.1352 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.0777    0.9492   -0.1235 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.3767   -0.1279   -0.6101 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.9080    0.0646   -0.8770 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.2233   -0.2866    0.4130 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2941   -0.1684    0.3008 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6270    1.2390   -0.0420 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0566    1.5367   -0.1403 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8300    0.9331   -1.2147 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9849   -0.5207   -1.3927 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5482   -1.2663   -0.2123 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.9237   -0.6827    0.0580 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.5879   -1.3618    1.2323 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.9218   -0.7310    1.4256 C   0  0  0  0  0  0  0  0  0  0  0  0
   -7.4268    0.3677    0.5715 C   0  0  0  0  0  0  0  0  0  0  0  0
   -7.6322   -1.1405    2.3322 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.0329   -1.3029   -0.8251 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.3362   -1.4043   -0.5666 N   0  0  0  0  0  0  0  0  0  0  0  0
    9.9195    1.6101    0.9282 H   0  0  0  0  0  0  0  0  0  0  0  0
   10.0315   -0.0866    0.2461 H   0  0  0  0  0  0  0  0  0  0  0  0
    9.6304    0.1336    1.9966 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.9904    1.6711    0.5233 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.5574    1.9001    0.0528 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.8201    1.1216   -1.1793 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.6206   -0.6148   -1.7051 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.5537    0.4380    1.1858 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.4892   -1.2950    0.7315 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6696   -0.9468   -0.3464 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6482   -0.3824    1.3510 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0864    1.9590    0.6383 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0959    1.4392   -1.0353 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.5882    1.3533    0.8696 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1278    2.6934   -0.1934 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.8596    1.4389   -1.1928 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4660    1.3087   -2.2521 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.8648   -0.6000   -2.1736 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1436   -1.0338   -1.8205 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9405   -1.2188    0.6934 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.6910   -2.3381   -0.4942 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.5560   -0.9447   -0.8407 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.8717    0.3965    0.2389 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.9371   -1.1792    2.1301 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.6775   -2.4617    1.0410 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.9616    1.3174    0.9657 H   0  0  0  0  0  0  0  0  0  0  0  0
   -8.5235    0.4428    0.6008 H   0  0  0  0  0  0  0  0  0  0  0  0
   -7.1262    0.3026   -0.4775 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.4339   -2.1272   -1.2114 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  3  4  2  0
  3  5  1  0
  5  6  2  0
  6  7  1  0
  7  8  2  0
  8  9  1  0
  9 10  1  0
 10 11  1  0
 11 12  1  0
 12 13  1  0
 13 14  1  0
 14 15  1  0
 15 16  1  0
 16 17  1  0
 17 18  1  0
 18 19  1  0
 19 20  1  0
 19 21  2  0
  8 22  1  0
 22 23  2  0
 23  5  1  0
  1 24  1  0
  1 25  1  0
  1 26  1  0
  6 27  1  0
  7 28  1  0
  9 29  1  0
  9 30  1  0
 10 31  1  0
 10 32  1  0
 11 33  1  0
 11 34  1  0
 12 35  1  0
 12 36  1  0
 13 37  1  0
 13 38  1  0
 14 39  1  0
 14 40  1  0
 15 41  1  0
 15 42  1  0
 16 43  1  0
 16 44  1  0
 17 45  1  0
 17 46  1  0
 18 47  1  0
 18 48  1  0
 20 49  1  0
 20 50  1  0
 20 51  1  0
 22 52  1  0
M  END


  Mrv1652309042213032D          

 23 23  0  0  0  0            999 V2000
   -3.5724    3.7125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8579    3.3000    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1434    3.7125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1434    4.5375    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4289    3.3000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7145    3.7125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0000    3.3000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0000    2.4750    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7145    2.0625    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4289    2.4750    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.1434    2.0625    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.8579    2.4750    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.5724    2.0625    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.2868    2.4750    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.0013    2.0625    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.7158    2.4750    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.4302    2.0625    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.1447    2.4750    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.8592    2.0625    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.5737    2.4750    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.8592    1.2375    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7145    2.0625    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4289    2.4750    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  1  0  0  0  0
  3  4  2  0  0  0  0
  3  5  1  0  0  0  0
  5  6  2  0  0  0  0
  6  7  1  0  0  0  0
  7  8  2  0  0  0  0
  8  9  1  0  0  0  0
  9 10  1  0  0  0  0
 10 11  1  0  0  0  0
 11 12  1  0  0  0  0
 12 13  1  0  0  0  0
 13 14  1  0  0  0  0
 14 15  1  0  0  0  0
 15 16  1  0  0  0  0
 16 17  1  0  0  0  0
 17 18  1  0  0  0  0
 18 19  1  0  0  0  0
 19 20  1  0  0  0  0
 19 21  2  0  0  0  0
  8 22  1  0  0  0  0
 22 23  2  0  0  0  0
  5 23  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0193573

> <DATABASE_NAME>
NP-MRD

> <SMILES>
COC(=O)C1=CC=C(CCCCCCCCCCC(C)=O)C=N1

> <INCHI_IDENTIFIER>
InChI=1S/C19H29NO3/c1-16(21)11-9-7-5-3-4-6-8-10-12-17-13-14-18(20-15-17)19(22)23-2/h13-15H,3-12H2,1-2H3

> <INCHI_KEY>
UHJLMQFCMOAMFQ-UHFFFAOYSA-N

> <FORMULA>
C19H29NO3

> <MOLECULAR_WEIGHT>
319.445

> <EXACT_MASS>
319.214743798

> <JCHEM_ACCEPTOR_COUNT>
3

> <JCHEM_ATOM_COUNT>
52

> <JCHEM_AVERAGE_POLARIZABILITY>
38.88733364307391

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
0

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
1

> <JCHEM_IUPAC>
methyl 5-(11-oxododecyl)pyridine-2-carboxylate

> <JCHEM_LOGP>
4.913392475666667

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
1

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA_STRONGEST_ACIDIC>
19.64344776069631

> <JCHEM_PKA_STRONGEST_BASIC>
2.572109134113844

> <JCHEM_POLAR_SURFACE_AREA>
56.260000000000005

> <JCHEM_REFRACTIVITY>
91.82209999999996

> <JCHEM_ROTATABLE_BOND_COUNT>
13

> <JCHEM_RULE_OF_FIVE>
1

> <JCHEM_TRADITIONAL_IUPAC>
methyl 5-(11-oxododecyl)pyridine-2-carboxylate

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 04-SEP-22   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   04-SEP-22         0                                  
HETATM    1  C   UNK     0      -6.668   6.930   0.000  0.00  0.00           C+0
HETATM    2  O   UNK     0      -5.335   6.160   0.000  0.00  0.00           O+0
HETATM    3  C   UNK     0      -4.001   6.930   0.000  0.00  0.00           C+0
HETATM    4  O   UNK     0      -4.001   8.470   0.000  0.00  0.00           O+0
HETATM    5  C   UNK     0      -2.667   6.160   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0      -1.334   6.930   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0       0.000   6.160   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0       0.000   4.620   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0       1.334   3.850   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0       2.667   4.620   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0       4.001   3.850   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0       5.335   4.620   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0       6.668   3.850   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0       8.002   4.620   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0       9.336   3.850   0.000  0.00  0.00           C+0
HETATM   16  C   UNK     0      10.669   4.620   0.000  0.00  0.00           C+0
HETATM   17  C   UNK     0      12.003   3.850   0.000  0.00  0.00           C+0
HETATM   18  C   UNK     0      13.337   4.620   0.000  0.00  0.00           C+0
HETATM   19  C   UNK     0      14.670   3.850   0.000  0.00  0.00           C+0
HETATM   20  C   UNK     0      16.004   4.620   0.000  0.00  0.00           C+0
HETATM   21  O   UNK     0      14.670   2.310   0.000  0.00  0.00           O+0
HETATM   22  C   UNK     0      -1.334   3.850   0.000  0.00  0.00           C+0
HETATM   23  N   UNK     0      -2.667   4.620   0.000  0.00  0.00           N+0
CONECT    1    2                                                            
CONECT    2    1    3                                                       
CONECT    3    2    4    5                                                  
CONECT    4    3                                                            
CONECT    5    3    6   23                                                  
CONECT    6    5    7                                                       
CONECT    7    6    8                                                       
CONECT    8    7    9   22                                                  
CONECT    9    8   10                                                       
CONECT   10    9   11                                                       
CONECT   11   10   12                                                       
CONECT   12   11   13                                                       
CONECT   13   12   14                                                       
CONECT   14   13   15                                                       
CONECT   15   14   16                                                       
CONECT   16   15   17                                                       
CONECT   17   16   18                                                       
CONECT   18   17   19                                                       
CONECT   19   18   20   21                                                  
CONECT   20   19                                                            
CONECT   21   19                                                            
CONECT   22    8   23                                                       
CONECT   23   22    5                                                       
MASTER        0    0    0    0    0    0    0    0   23    0   46    0
END

View in JSmol

Synonyms

Value	Source
Penicolinic acid e	Generator

Chemical Formula

C₁₉H₂₉NO₃

Average Mass

319.4450 Da

Monoisotopic Mass

319.21474 Da

IUPAC Name

methyl 5-(11-oxododecyl)pyridine-2-carboxylate

Traditional Name

methyl 5-(11-oxododecyl)pyridine-2-carboxylate

CAS Registry Number

Not Available

SMILES

COC(=O)C1=CC=C(CCCCCCCCCCC(C)=O)C=N1

InChI Identifier

InChI=1S/C19H29NO3/c1-16(21)11-9-7-5-3-4-6-8-10-12-17-13-14-18(20-15-17)19(22)23-2/h13-15H,3-12H2,1-2H3

InChI Key

UHJLMQFCMOAMFQ-UHFFFAOYSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Not Available

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as 5-alkyl-2-carboxypyrimidines. These are pyrimidine-2-carboxylic acids that carry an alkyl group at the 5-position of the pyridine ring.

Kingdom

Organic compounds

Super Class

Organoheterocyclic compounds

Class

Pyridines and derivatives

Sub Class

Pyridinecarboxylic acids and derivatives

Direct Parent

5-alkyl-2-carboxypyrimidines

Alternative Parents

Substituents

5-alkyl-2-carboxypyrimidine
Methyl ester
Heteroaromatic compound
Carboxylic acid ester
Ketone
Azacycle
Monocarboxylic acid or derivatives
Carboxylic acid derivative
Hydrocarbon derivative
Organic oxygen compound
Organic nitrogen compound
Organooxygen compound
Organonitrogen compound
Carbonyl group
Organic oxide
Organopnictogen compound
Aromatic heteromonocyclic compound

Molecular Framework

Aromatic heteromonocyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	4.91	ChemAxon
pKa (Strongest Acidic)	19.64	ChemAxon
pKa (Strongest Basic)	2.57	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	3	ChemAxon
Hydrogen Donor Count	0	ChemAxon
Polar Surface Area	56.26 Å²	ChemAxon
Rotatable Bond Count	13	ChemAxon
Refractivity	91.82 m³·mol⁻¹	ChemAxon
Polarizability	38.89 Å³	ChemAxon
Number of Rings	1	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	Yes	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

78434856

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

102430175

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

LOTUS database [Link]

Showing NP-Card for methyl 5-(11-oxododecyl)pyridine-2-carboxylate (NP0193573)

MOL for NP0193573 (methyl 5-(11-oxododecyl)pyridine-2-carboxylate)

3D MOL for NP0193573 (methyl 5-(11-oxododecyl)pyridine-2-carboxylate)

3D SDF for NP0193573 (methyl 5-(11-oxododecyl)pyridine-2-carboxylate)

3D-SDF for NP0193573 (methyl 5-(11-oxododecyl)pyridine-2-carboxylate)

PDB for NP0193573 (methyl 5-(11-oxododecyl)pyridine-2-carboxylate)

3D PDB for NP0193573 (methyl 5-(11-oxododecyl)pyridine-2-carboxylate)

SMILES for NP0193573 (methyl 5-(11-oxododecyl)pyridine-2-carboxylate)

INCHI for NP0193573 (methyl 5-(11-oxododecyl)pyridine-2-carboxylate)

Structure for NP0193573 (methyl 5-(11-oxododecyl)pyridine-2-carboxylate)

3D Structure for NP0193573 (methyl 5-(11-oxododecyl)pyridine-2-carboxylate)