NP-MRD: Showing NP-Card for (2r,4as,8s,8ar)-8-[2-(6,7-dihydroxy-2,5-dimethylnaphthalen-1-yl)ethyl]-2,4a,8-trimethyl-7-methylidene-hexahydronaphthalene-2-carboxylic acid (NP0192762)

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Record Information

Version

2.0

Created at

2022-09-04 10:02:55 UTC

Updated at

2022-09-04 10:02:55 UTC

NP-MRD ID

NP0192762

Secondary Accession Numbers

None

Natural Product Identification

Common Name

(2r,4as,8s,8ar)-8-[2-(6,7-dihydroxy-2,5-dimethylnaphthalen-1-yl)ethyl]-2,4a,8-trimethyl-7-methylidene-hexahydronaphthalene-2-carboxylic acid

Description

(13S)-2,3-Dihydroxy-13-methyl-24,25-dinor-8,14-secooleana-1,3,5(10),6,8,14(27)-hexaene-29-oic acid belongs to the class of organic compounds known as naphthols and derivatives. These are naphthalene derivatives carrying one or more hydroxyl (-OH) groups at any ring position. (2r,4as,8s,8ar)-8-[2-(6,7-dihydroxy-2,5-dimethylnaphthalen-1-yl)ethyl]-2,4a,8-trimethyl-7-methylidene-hexahydronaphthalene-2-carboxylic acid is found in Celastrus orbiculatus. Based on a literature review very few articles have been published on (13S)-2,3-Dihydroxy-13-methyl-24,25-dinor-8,14-secooleana-1,3,5(10),6,8,14(27)-hexaene-29-oic acid.

Structure

MOL 3D MOL SDF PDB SMILES InChI


  Mrv1652309042212022D          

 33 36  0  0  1  0            999 V2000
    1.9762   -3.0417    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
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M  END

     RDKit          3D

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M  END


  Mrv1652309042212022D          

 33 36  0  0  1  0            999 V2000
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M  END
> <DATABASE_ID>
NP0192762

> <DATABASE_NAME>
NP-MRD

> <SMILES>
CC1=CC=C2C(C)=C(O)C(O)=CC2=C1CC[C@@]1(C)[C@@H]2C[C@@](C)(CC[C@]2(C)CCC1=C)C(O)=O

> <INCHI_IDENTIFIER>
InChI=1S/C29H38O4/c1-17-7-8-21-19(3)25(31)23(30)15-22(21)20(17)10-12-29(6)18(2)9-11-27(4)13-14-28(5,26(32)33)16-24(27)29/h7-8,15,24,30-31H,2,9-14,16H2,1,3-6H3,(H,32,33)/t24-,27+,28-,29-/m1/s1

> <INCHI_KEY>
ZMBNMIOJXQJKNU-AKJWSFQKSA-N

> <FORMULA>
C29H38O4

> <MOLECULAR_WEIGHT>
450.619

> <EXACT_MASS>
450.277009704

> <JCHEM_ACCEPTOR_COUNT>
4

> <JCHEM_ATOM_COUNT>
71

> <JCHEM_AVERAGE_POLARIZABILITY>
51.936002442158525

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
3

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
(2R,4aS,8S,8aR)-8-[2-(6,7-dihydroxy-2,5-dimethylnaphthalen-1-yl)ethyl]-2,4a,8-trimethyl-7-methylidene-decahydronaphthalene-2-carboxylic acid

> <JCHEM_LOGP>
7.704237241666668

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
4

> <JCHEM_PHYSIOLOGICAL_CHARGE>
-1

> <JCHEM_PKA>
9.36914653988056

> <JCHEM_PKA_STRONGEST_ACIDIC>
4.746671291374718

> <JCHEM_PKA_STRONGEST_BASIC>
-6.289793050207309

> <JCHEM_POLAR_SURFACE_AREA>
77.76

> <JCHEM_REFRACTIVITY>
132.4602

> <JCHEM_ROTATABLE_BOND_COUNT>
4

> <JCHEM_RULE_OF_FIVE>
0

> <JCHEM_TRADITIONAL_IUPAC>
(2R,4aS,8S,8aR)-8-[2-(6,7-dihydroxy-2,5-dimethylnaphthalen-1-yl)ethyl]-2,4a,8-trimethyl-7-methylidene-hexahydronaphthalene-2-carboxylic acid

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 04-SEP-22   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   04-SEP-22         0                                  
HETATM    1  C   UNK     0       3.689  -5.678   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0       2.873  -6.984   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0       3.596  -8.343   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0       2.780  -9.649   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0       1.241  -9.596   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0       1.964 -10.955   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0       0.425 -10.902   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0      -1.115 -10.848   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0      -1.838  -9.488   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0      -3.051 -10.436   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0      -2.982  -8.458   0.000  0.00  0.00           C+0
HETATM   12  O   UNK     0      -2.662  -6.951   0.000  0.00  0.00           O+0
HETATM   13  O   UNK     0      -4.447  -8.934   0.000  0.00  0.00           O+0
HETATM   14  C   UNK     0      -1.021  -8.182   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0       0.518  -8.236   0.000  0.00  0.00           C+0
HETATM   16  C   UNK     0       1.334  -6.930   0.000  0.00  0.00           C+0
HETATM   17  C   UNK     0       0.057  -6.069   0.000  0.00  0.00           C+0
HETATM   18  C   UNK     0       1.334  -5.390   0.000  0.00  0.00           C+0
HETATM   19  C   UNK     0       2.667  -4.620   0.000  0.00  0.00           C+0
HETATM   20  C   UNK     0       2.667  -3.080   0.000  0.00  0.00           C+0
HETATM   21  C   UNK     0       1.334  -2.310   0.000  0.00  0.00           C+0
HETATM   22  C   UNK     0       0.000  -3.080   0.000  0.00  0.00           C+0
HETATM   23  C   UNK     0       1.334  -0.770   0.000  0.00  0.00           C+0
HETATM   24  C   UNK     0       2.667   0.000   0.000  0.00  0.00           C+0
HETATM   25  C   UNK     0       4.001  -0.770   0.000  0.00  0.00           C+0
HETATM   26  C   UNK     0       5.335   0.000   0.000  0.00  0.00           C+0
HETATM   27  C   UNK     0       5.335   1.540   0.000  0.00  0.00           C+0
HETATM   28  C   UNK     0       6.668  -0.770   0.000  0.00  0.00           C+0
HETATM   29  O   UNK     0       8.002  -0.000   0.000  0.00  0.00           O+0
HETATM   30  C   UNK     0       6.668  -2.310   0.000  0.00  0.00           C+0
HETATM   31  O   UNK     0       8.002  -3.080   0.000  0.00  0.00           O+0
HETATM   32  C   UNK     0       5.335  -3.080   0.000  0.00  0.00           C+0
HETATM   33  C   UNK     0       4.001  -2.310   0.000  0.00  0.00           C+0
CONECT    1    2                                                            
CONECT    2    1    3   16                                                  
CONECT    3    2    4                                                       
CONECT    4    3    5                                                       
CONECT    5    4    6    7   15                                             
CONECT    6    5                                                            
CONECT    7    5    8                                                       
CONECT    8    7    9                                                       
CONECT    9    8   10   11   14                                             
CONECT   10    9                                                            
CONECT   11    9   12   13                                                  
CONECT   12   11                                                            
CONECT   13   11                                                            
CONECT   14    9   15                                                       
CONECT   15   14    5   16                                                  
CONECT   16   15    2   17   18                                             
CONECT   17   16                                                            
CONECT   18   16   19                                                       
CONECT   19   18   20                                                       
CONECT   20   19   21   33                                                  
CONECT   21   20   22   23                                                  
CONECT   22   21                                                            
CONECT   23   21   24                                                       
CONECT   24   23   25                                                       
CONECT   25   24   26   33                                                  
CONECT   26   25   27   28                                                  
CONECT   27   26                                                            
CONECT   28   26   29   30                                                  
CONECT   29   28                                                            
CONECT   30   28   31   32                                                  
CONECT   31   30                                                            
CONECT   32   30   33                                                       
CONECT   33   32   20   25                                                  
MASTER        0    0    0    0    0    0    0    0   33    0   72    0
END

View in JSmol

Synonyms

Value	Source
(13S)-2,3-Dihydroxy-13-methyl-24,25-dinor-8,14-secooleana-1,3,5(10),6,8,14(27)-hexaene-29-Oate	Generator

Chemical Formula

C₂₉H₃₈O₄

Average Mass

450.6190 Da

Monoisotopic Mass

450.27701 Da

IUPAC Name

(2R,4aS,8S,8aR)-8-[2-(6,7-dihydroxy-2,5-dimethylnaphthalen-1-yl)ethyl]-2,4a,8-trimethyl-7-methylidene-decahydronaphthalene-2-carboxylic acid

Traditional Name

(2R,4aS,8S,8aR)-8-[2-(6,7-dihydroxy-2,5-dimethylnaphthalen-1-yl)ethyl]-2,4a,8-trimethyl-7-methylidene-hexahydronaphthalene-2-carboxylic acid

CAS Registry Number

Not Available

SMILES

CC1=CC=C2C(C)=C(O)C(O)=CC2=C1CC[C@@]1(C)[C@@H]2C[C@@](C)(CC[C@]2(C)CCC1=C)C(O)=O

InChI Identifier

InChI=1S/C29H38O4/c1-17-7-8-21-19(3)25(31)23(30)15-22(21)20(17)10-12-29(6)18(2)9-11-27(4)13-14-28(5,26(32)33)16-24(27)29/h7-8,15,24,30-31H,2,9-14,16H2,1,3-6H3,(H,32,33)/t24-,27+,28-,29-/m1/s1

InChI Key

ZMBNMIOJXQJKNU-AKJWSFQKSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Celastrus orbiculatus	LOTUS Database	35616633

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as naphthols and derivatives. These are naphthalene derivatives carrying one or more hydroxyl (-OH) groups at any ring position.

Kingdom

Organic compounds

Super Class

Benzenoids

Class

Naphthalenes

Sub Class

Naphthols and derivatives

Direct Parent

Naphthols and derivatives

Alternative Parents

Substituents

2-naphthol
1-hydroxy-2-unsubstituted benzenoid
Phenol
Monocarboxylic acid or derivatives
Carboxylic acid
Carboxylic acid derivative
Organic oxygen compound
Organic oxide
Hydrocarbon derivative
Organooxygen compound
Carbonyl group
Aromatic homopolycyclic compound

Molecular Framework

Aromatic homopolycyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	7.7	ChemAxon
pKa (Strongest Acidic)	4.75	ChemAxon
pKa (Strongest Basic)	-6.3	ChemAxon
Physiological Charge	-1	ChemAxon
Hydrogen Acceptor Count	4	ChemAxon
Hydrogen Donor Count	3	ChemAxon
Polar Surface Area	77.76 Å²	ChemAxon
Rotatable Bond Count	4	ChemAxon
Refractivity	132.46 m³·mol⁻¹	ChemAxon
Polarizability	51.94 Å³	ChemAxon
Number of Rings	4	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	No	ChemAxon
Ghose Filter	No	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

Not Available

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

56958611

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

LOTUS database [Link]

Showing NP-Card for (2r,4as,8s,8ar)-8-[2-(6,7-dihydroxy-2,5-dimethylnaphthalen-1-yl)ethyl]-2,4a,8-trimethyl-7-methylidene-hexahydronaphthalene-2-carboxylic acid (NP0192762)

MOL for NP0192762 ((2r,4as,8s,8ar)-8-[2-(6,7-dihydroxy-2,5-dimethylnaphthalen-1-yl)ethyl]-2,4a,8-trimethyl-7-methylidene-hexahydronaphthalene-2-carboxylic acid)

3D MOL for NP0192762 ((2r,4as,8s,8ar)-8-[2-(6,7-dihydroxy-2,5-dimethylnaphthalen-1-yl)ethyl]-2,4a,8-trimethyl-7-methylidene-hexahydronaphthalene-2-carboxylic acid)

3D SDF for NP0192762 ((2r,4as,8s,8ar)-8-[2-(6,7-dihydroxy-2,5-dimethylnaphthalen-1-yl)ethyl]-2,4a,8-trimethyl-7-methylidene-hexahydronaphthalene-2-carboxylic acid)

3D-SDF for NP0192762 ((2r,4as,8s,8ar)-8-[2-(6,7-dihydroxy-2,5-dimethylnaphthalen-1-yl)ethyl]-2,4a,8-trimethyl-7-methylidene-hexahydronaphthalene-2-carboxylic acid)

PDB for NP0192762 ((2r,4as,8s,8ar)-8-[2-(6,7-dihydroxy-2,5-dimethylnaphthalen-1-yl)ethyl]-2,4a,8-trimethyl-7-methylidene-hexahydronaphthalene-2-carboxylic acid)

3D PDB for NP0192762 ((2r,4as,8s,8ar)-8-[2-(6,7-dihydroxy-2,5-dimethylnaphthalen-1-yl)ethyl]-2,4a,8-trimethyl-7-methylidene-hexahydronaphthalene-2-carboxylic acid)

SMILES for NP0192762 ((2r,4as,8s,8ar)-8-[2-(6,7-dihydroxy-2,5-dimethylnaphthalen-1-yl)ethyl]-2,4a,8-trimethyl-7-methylidene-hexahydronaphthalene-2-carboxylic acid)

INCHI for NP0192762 ((2r,4as,8s,8ar)-8-[2-(6,7-dihydroxy-2,5-dimethylnaphthalen-1-yl)ethyl]-2,4a,8-trimethyl-7-methylidene-hexahydronaphthalene-2-carboxylic acid)

Structure for NP0192762 ((2r,4as,8s,8ar)-8-[2-(6,7-dihydroxy-2,5-dimethylnaphthalen-1-yl)ethyl]-2,4a,8-trimethyl-7-methylidene-hexahydronaphthalene-2-carboxylic acid)

3D Structure for NP0192762 ((2r,4as,8s,8ar)-8-[2-(6,7-dihydroxy-2,5-dimethylnaphthalen-1-yl)ethyl]-2,4a,8-trimethyl-7-methylidene-hexahydronaphthalene-2-carboxylic acid)