NP-MRD: Showing NP-Card for (2r)-2,5,7,8-tetramethyl-2-[(4r,8r,11s)-8,11,12-trihydroxy-4,8,12-trimethyltridecyl]-3,4-dihydro-1-benzopyran-6-yl acetate (NP0192047)

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Record Information

Version

2.0

Created at

2022-09-04 09:10:07 UTC

Updated at

2022-09-04 09:10:07 UTC

NP-MRD ID

NP0192047

Secondary Accession Numbers

None

Natural Product Identification

Common Name

(2r)-2,5,7,8-tetramethyl-2-[(4r,8r,11s)-8,11,12-trihydroxy-4,8,12-trimethyltridecyl]-3,4-dihydro-1-benzopyran-6-yl acetate

Description

(2R)-2,5,7,8-tetramethyl-2-[(4R,8R,11S)-8,11,12-trihydroxy-4,8,12-trimethyltridecyl]-3,4-dihydro-2H-1-benzopyran-6-yl acetate belongs to the class of organic compounds known as vitamin e compounds. These are a group of fat-soluble compounds containing or derived either from a tocopherol or a tocotrienol skeleton. (2r)-2,5,7,8-tetramethyl-2-[(4r,8r,11s)-8,11,12-trihydroxy-4,8,12-trimethyltridecyl]-3,4-dihydro-1-benzopyran-6-yl acetate is found in Lobophytum crassum. Based on a literature review very few articles have been published on (2R)-2,5,7,8-tetramethyl-2-[(4R,8R,11S)-8,11,12-trihydroxy-4,8,12-trimethyltridecyl]-3,4-dihydro-2H-1-benzopyran-6-yl acetate.

Structure

MOL 3D MOL SDF PDB SMILES InChI


  Mrv1652309042211102D          

 37 38  0  0  1  0            999 V2000
    1.1767   -4.8710    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
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  1  2  1  0  0  0  0
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 16 37  1  0  0  0  0
 10 37  1  0  0  0  0
M  END

     RDKit          3D

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M  END


  Mrv1652309042211102D          

 37 38  0  0  1  0            999 V2000
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    2.9559    0.2692    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.6704    0.6817    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.3848    0.2692    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    4.3848   -0.5558    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.0993    0.6817    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.8138    0.2692    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.5282    0.6817    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.2427    0.2692    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    6.8302   -0.4452    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.6552    0.9837    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    7.9572   -0.1433    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.6716    0.2692    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    9.3861   -0.1433    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    9.3861   -0.9683    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   10.1006    0.2692    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   10.8151    0.6817    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   10.5131   -0.4452    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    9.6881    0.9837    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.0572   -0.3627    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  2  0  0  0  0
  2  4  1  0  0  0  0
  4  5  1  0  0  0  0
  5  6  2  0  0  0  0
  6  7  1  0  0  0  0
  6  8  1  0  0  0  0
  8  9  1  0  0  0  0
  8 10  2  0  0  0  0
 10 11  1  0  0  0  0
 11 12  2  0  0  0  0
  5 12  1  0  0  0  0
 12 13  1  0  0  0  0
 11 14  1  0  0  0  0
 14 15  1  0  0  0  0
 15 16  1  0  0  0  0
 16 17  1  6  0  0  0
 16 18  1  1  0  0  0
 18 19  1  0  0  0  0
 19 20  1  0  0  0  0
 20 21  1  0  0  0  0
 21 22  1  1  0  0  0
 21 23  1  0  0  0  0
 23 24  1  0  0  0  0
 24 25  1  0  0  0  0
 25 26  1  0  0  0  0
 26 27  1  6  0  0  0
 26 28  1  6  0  0  0
 26 29  1  0  0  0  0
 29 30  1  0  0  0  0
 30 31  1  0  0  0  0
 31 32  1  1  0  0  0
 31 33  1  0  0  0  0
 33 34  1  0  0  0  0
 33 35  1  0  0  0  0
 33 36  1  0  0  0  0
 16 37  1  0  0  0  0
 10 37  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0192047

> <DATABASE_NAME>
NP-MRD

> <SMILES>
C[C@H](CCC[C@@](C)(O)CC[C@H](O)C(C)(C)O)CCC[C@]1(C)CCC2=C(C)C(OC(C)=O)=C(C)C(C)=C2O1

> <INCHI_IDENTIFIER>
InChI=1S/C31H52O6/c1-20(12-10-16-30(8,35)18-15-26(33)29(6,7)34)13-11-17-31(9)19-14-25-23(4)27(36-24(5)32)21(2)22(3)28(25)37-31/h20,26,33-35H,10-19H2,1-9H3/t20-,26+,30-,31-/m1/s1

> <INCHI_KEY>
VVCQFFPTEBKGFH-CFIKWFLLSA-N

> <FORMULA>
C31H52O6

> <MOLECULAR_WEIGHT>
520.751

> <EXACT_MASS>
520.376389394

> <JCHEM_ACCEPTOR_COUNT>
5

> <JCHEM_ATOM_COUNT>
89

> <JCHEM_AVERAGE_POLARIZABILITY>
62.42592571659277

> <JCHEM_BIOAVAILABILITY>
0

> <JCHEM_DONOR_COUNT>
3

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
(2R)-2,5,7,8-tetramethyl-2-[(4R,8R,11S)-8,11,12-trihydroxy-4,8,12-trimethyltridecyl]-3,4-dihydro-2H-1-benzopyran-6-yl acetate

> <JCHEM_LOGP>
6.479364309

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
2

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA>
14.897475094232004

> <JCHEM_PKA_STRONGEST_ACIDIC>
13.82048092017217

> <JCHEM_PKA_STRONGEST_BASIC>
-2.7740934735580582

> <JCHEM_POLAR_SURFACE_AREA>
96.22000000000001

> <JCHEM_REFRACTIVITY>
149.4823

> <JCHEM_ROTATABLE_BOND_COUNT>
14

> <JCHEM_RULE_OF_FIVE>
0

> <JCHEM_TRADITIONAL_IUPAC>
(2R)-2,5,7,8-tetramethyl-2-[(4R,8R,11S)-8,11,12-trihydroxy-4,8,12-trimethyltridecyl]-3,4-dihydro-1-benzopyran-6-yl acetate

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 04-SEP-22   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   04-SEP-22         0                                  
HETATM    1  C   UNK     0       2.197  -9.092   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0       2.723  -7.645   0.000  0.00  0.00           C+0
HETATM    3  O   UNK     0       4.240  -7.378   0.000  0.00  0.00           O+0
HETATM    4  O   UNK     0       1.733  -6.466   0.000  0.00  0.00           O+0
HETATM    5  C   UNK     0       2.260  -5.019   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0       3.777  -4.751   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0       4.767  -5.931   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0       4.303  -3.304   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0       5.820  -3.037   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0       3.313  -2.124   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0       1.797  -2.392   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0       1.270  -3.839   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0      -0.246  -4.106   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0       0.807  -1.212   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0       1.334   0.235   0.000  0.00  0.00           C+0
HETATM   16  C   UNK     0       2.850   0.503   0.000  0.00  0.00           C+0
HETATM   17  C   UNK     0       2.324   1.950   0.000  0.00  0.00           C+0
HETATM   18  C   UNK     0       4.184   1.273   0.000  0.00  0.00           C+0
HETATM   19  C   UNK     0       5.518   0.503   0.000  0.00  0.00           C+0
HETATM   20  C   UNK     0       6.851   1.273   0.000  0.00  0.00           C+0
HETATM   21  C   UNK     0       8.185   0.503   0.000  0.00  0.00           C+0
HETATM   22  C   UNK     0       8.185  -1.037   0.000  0.00  0.00           C+0
HETATM   23  C   UNK     0       9.519   1.273   0.000  0.00  0.00           C+0
HETATM   24  C   UNK     0      10.852   0.503   0.000  0.00  0.00           C+0
HETATM   25  C   UNK     0      12.186   1.273   0.000  0.00  0.00           C+0
HETATM   26  C   UNK     0      13.520   0.503   0.000  0.00  0.00           C+0
HETATM   27  C   UNK     0      12.750  -0.831   0.000  0.00  0.00           C+0
HETATM   28  O   UNK     0      14.290   1.836   0.000  0.00  0.00           O+0
HETATM   29  C   UNK     0      14.853  -0.267   0.000  0.00  0.00           C+0
HETATM   30  C   UNK     0      16.187   0.503   0.000  0.00  0.00           C+0
HETATM   31  C   UNK     0      17.521  -0.267   0.000  0.00  0.00           C+0
HETATM   32  O   UNK     0      17.521  -1.807   0.000  0.00  0.00           O+0
HETATM   33  C   UNK     0      18.854   0.503   0.000  0.00  0.00           C+0
HETATM   34  C   UNK     0      20.188   1.273   0.000  0.00  0.00           C+0
HETATM   35  C   UNK     0      19.624  -0.831   0.000  0.00  0.00           C+0
HETATM   36  O   UNK     0      18.084   1.836   0.000  0.00  0.00           O+0
HETATM   37  O   UNK     0       3.840  -0.677   0.000  0.00  0.00           O+0
CONECT    1    2                                                            
CONECT    2    1    3    4                                                  
CONECT    3    2                                                            
CONECT    4    2    5                                                       
CONECT    5    4    6   12                                                  
CONECT    6    5    7    8                                                  
CONECT    7    6                                                            
CONECT    8    6    9   10                                                  
CONECT    9    8                                                            
CONECT   10    8   11   37                                                  
CONECT   11   10   12   14                                                  
CONECT   12   11    5   13                                                  
CONECT   13   12                                                            
CONECT   14   11   15                                                       
CONECT   15   14   16                                                       
CONECT   16   15   17   18   37                                             
CONECT   17   16                                                            
CONECT   18   16   19                                                       
CONECT   19   18   20                                                       
CONECT   20   19   21                                                       
CONECT   21   20   22   23                                                  
CONECT   22   21                                                            
CONECT   23   21   24                                                       
CONECT   24   23   25                                                       
CONECT   25   24   26                                                       
CONECT   26   25   27   28   29                                             
CONECT   27   26                                                            
CONECT   28   26                                                            
CONECT   29   26   30                                                       
CONECT   30   29   31                                                       
CONECT   31   30   32   33                                                  
CONECT   32   31                                                            
CONECT   33   31   34   35   36                                             
CONECT   34   33                                                            
CONECT   35   33                                                            
CONECT   36   33                                                            
CONECT   37   16   10                                                       
MASTER        0    0    0    0    0    0    0    0   37    0   76    0
END

View in JSmol

Synonyms

Value	Source
(2R)-2,5,7,8-Tetramethyl-2-[(4R,8R,11S)-8,11,12-trihydroxy-4,8,12-trimethyltridecyl]-3,4-dihydro-2H-1-benzopyran-6-yl acetic acid	Generator

Chemical Formula

C₃₁H₅₂O₆

Average Mass

520.7510 Da

Monoisotopic Mass

520.37639 Da

IUPAC Name

(2R)-2,5,7,8-tetramethyl-2-[(4R,8R,11S)-8,11,12-trihydroxy-4,8,12-trimethyltridecyl]-3,4-dihydro-2H-1-benzopyran-6-yl acetate

Traditional Name

(2R)-2,5,7,8-tetramethyl-2-[(4R,8R,11S)-8,11,12-trihydroxy-4,8,12-trimethyltridecyl]-3,4-dihydro-1-benzopyran-6-yl acetate

CAS Registry Number

Not Available

SMILES

C[C@H](CCC[C@@](C)(O)CC[C@H](O)C(C)(C)O)CCC[C@]1(C)CCC2=C(C)C(OC(C)=O)=C(C)C(C)=C2O1

InChI Identifier

InChI=1S/C31H52O6/c1-20(12-10-16-30(8,35)18-15-26(33)29(6,7)34)13-11-17-31(9)19-14-25-23(4)27(36-24(5)32)21(2)22(3)28(25)37-31/h20,26,33-35H,10-19H2,1-9H3/t20-,26+,30-,31-/m1/s1

InChI Key

VVCQFFPTEBKGFH-CFIKWFLLSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Lobophytum crassum	LOTUS Database	35616633

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as vitamin e compounds. These are a group of fat-soluble compounds containing or derived either from a tocopherol or a tocotrienol skeleton.

Kingdom

Organic compounds

Super Class

Lipids and lipid-like molecules

Class

Prenol lipids

Sub Class

Quinone and hydroquinone lipids

Direct Parent

Vitamin E compounds

Alternative Parents

Substituents

Diterpenoid
Long chain fatty alcohol
Chromane
Benzopyran
1-benzopyran
Fatty alcohol
Alkyl aryl ether
Fatty acyl
Benzenoid
Tertiary alcohol
Carboxylic acid ester
Secondary alcohol
Carboxylic acid derivative
Oxacycle
Organoheterocyclic compound
Ether
Polyol
Monocarboxylic acid or derivatives
Alcohol
Organic oxygen compound
Organic oxide
Hydrocarbon derivative
Organooxygen compound
Carbonyl group
Aromatic heteropolycyclic compound

Molecular Framework

Aromatic heteropolycyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	6.48	ChemAxon
pKa (Strongest Acidic)	13.82	ChemAxon
pKa (Strongest Basic)	-2.8	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	5	ChemAxon
Hydrogen Donor Count	3	ChemAxon
Polar Surface Area	96.22 Å²	ChemAxon
Rotatable Bond Count	14	ChemAxon
Refractivity	149.48 m³·mol⁻¹	ChemAxon
Polarizability	62.43 Å³	ChemAxon
Number of Rings	2	ChemAxon
Bioavailability	No	ChemAxon
Rule of Five	No	ChemAxon
Ghose Filter	No	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

28185097

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

53483492

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

LOTUS database [Link]

Showing NP-Card for (2r)-2,5,7,8-tetramethyl-2-[(4r,8r,11s)-8,11,12-trihydroxy-4,8,12-trimethyltridecyl]-3,4-dihydro-1-benzopyran-6-yl acetate (NP0192047)

MOL for NP0192047 ((2r)-2,5,7,8-tetramethyl-2-[(4r,8r,11s)-8,11,12-trihydroxy-4,8,12-trimethyltridecyl]-3,4-dihydro-1-benzopyran-6-yl acetate)

3D MOL for NP0192047 ((2r)-2,5,7,8-tetramethyl-2-[(4r,8r,11s)-8,11,12-trihydroxy-4,8,12-trimethyltridecyl]-3,4-dihydro-1-benzopyran-6-yl acetate)

3D SDF for NP0192047 ((2r)-2,5,7,8-tetramethyl-2-[(4r,8r,11s)-8,11,12-trihydroxy-4,8,12-trimethyltridecyl]-3,4-dihydro-1-benzopyran-6-yl acetate)

3D-SDF for NP0192047 ((2r)-2,5,7,8-tetramethyl-2-[(4r,8r,11s)-8,11,12-trihydroxy-4,8,12-trimethyltridecyl]-3,4-dihydro-1-benzopyran-6-yl acetate)

PDB for NP0192047 ((2r)-2,5,7,8-tetramethyl-2-[(4r,8r,11s)-8,11,12-trihydroxy-4,8,12-trimethyltridecyl]-3,4-dihydro-1-benzopyran-6-yl acetate)

3D PDB for NP0192047 ((2r)-2,5,7,8-tetramethyl-2-[(4r,8r,11s)-8,11,12-trihydroxy-4,8,12-trimethyltridecyl]-3,4-dihydro-1-benzopyran-6-yl acetate)

SMILES for NP0192047 ((2r)-2,5,7,8-tetramethyl-2-[(4r,8r,11s)-8,11,12-trihydroxy-4,8,12-trimethyltridecyl]-3,4-dihydro-1-benzopyran-6-yl acetate)

INCHI for NP0192047 ((2r)-2,5,7,8-tetramethyl-2-[(4r,8r,11s)-8,11,12-trihydroxy-4,8,12-trimethyltridecyl]-3,4-dihydro-1-benzopyran-6-yl acetate)

Structure for NP0192047 ((2r)-2,5,7,8-tetramethyl-2-[(4r,8r,11s)-8,11,12-trihydroxy-4,8,12-trimethyltridecyl]-3,4-dihydro-1-benzopyran-6-yl acetate)

3D Structure for NP0192047 ((2r)-2,5,7,8-tetramethyl-2-[(4r,8r,11s)-8,11,12-trihydroxy-4,8,12-trimethyltridecyl]-3,4-dihydro-1-benzopyran-6-yl acetate)