NP-MRD: Showing NP-Card for (2e)-3-[(2r,3s)-3-[(acetyloxy)methyl]-2,3-dihydroxy-2-(4-hydroxy-3-methoxyphenyl)-8-methoxy-4h-1-benzopyran-6-yl]prop-2-en-1-yl acetate (NP0192039)

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Record Information

Version

2.0

Created at

2022-09-04 09:09:35 UTC

Updated at

2022-09-04 09:09:35 UTC

NP-MRD ID

NP0192039

Secondary Accession Numbers

None

Natural Product Identification

Common Name

(2e)-3-[(2r,3s)-3-[(acetyloxy)methyl]-2,3-dihydroxy-2-(4-hydroxy-3-methoxyphenyl)-8-methoxy-4h-1-benzopyran-6-yl]prop-2-en-1-yl acetate

Description

(2E)-3-[(2R,3S)-3-[(acetyloxy)methyl]-2,3-dihydroxy-2-(4-hydroxy-3-methoxyphenyl)-8-methoxy-3,4-dihydro-2H-1-benzopyran-6-yl]prop-2-en-1-yl acetate belongs to the class of organic compounds known as 8-o-methylated flavonoids. These are flavonoids with methoxy groups attached to the C8 atom of the flavonoid backbone. (2e)-3-[(2r,3s)-3-[(acetyloxy)methyl]-2,3-dihydroxy-2-(4-hydroxy-3-methoxyphenyl)-8-methoxy-4h-1-benzopyran-6-yl]prop-2-en-1-yl acetate is found in Limonia acidissima. Based on a literature review very few articles have been published on (2E)-3-[(2R,3S)-3-[(acetyloxy)methyl]-2,3-dihydroxy-2-(4-hydroxy-3-methoxyphenyl)-8-methoxy-3,4-dihydro-2H-1-benzopyran-6-yl]prop-2-en-1-yl acetate.

Structure

MOL 3D MOL SDF PDB SMILES InChI


  Mrv1652309042211092D          

 35 37  0  0  1  0            999 V2000
   -3.1859   -3.8498    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9037   -3.0745    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
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   -1.5269   -1.0942    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.0000   -1.6500    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.7145   -1.2375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
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M  END

     RDKit          3D

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M  END


  Mrv1652309042211092D          

 35 37  0  0  1  0            999 V2000
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M  END
> <DATABASE_ID>
NP0192039

> <DATABASE_NAME>
NP-MRD

> <SMILES>
COC1=CC(=CC=C1O)[C@@]1(O)OC2=C(C[C@]1(O)COC(C)=O)C=C(\C=C\COC(C)=O)C=C2OC

> <INCHI_IDENTIFIER>
InChI=1S/C25H28O10/c1-15(26)33-9-5-6-17-10-18-13-24(29,14-34-16(2)27)25(30,35-23(18)22(11-17)32-4)19-7-8-20(28)21(12-19)31-3/h5-8,10-12,28-30H,9,13-14H2,1-4H3/b6-5+/t24-,25+/m0/s1

> <INCHI_KEY>
ZOOQSYSDJPCTCO-BUMFPCDBSA-N

> <FORMULA>
C25H28O10

> <MOLECULAR_WEIGHT>
488.489

> <EXACT_MASS>
488.168247102

> <JCHEM_ACCEPTOR_COUNT>
8

> <JCHEM_ATOM_COUNT>
63

> <JCHEM_AVERAGE_POLARIZABILITY>
50.884416879927144

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
3

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
(2E)-3-[(2R,3S)-3-[(acetyloxy)methyl]-2,3-dihydroxy-2-(4-hydroxy-3-methoxyphenyl)-8-methoxy-3,4-dihydro-2H-1-benzopyran-6-yl]prop-2-en-1-yl acetate

> <JCHEM_LOGP>
2.159259835666667

> <JCHEM_MDDR_LIKE_RULE>
1

> <JCHEM_NUMBER_OF_RINGS>
3

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA>
10.35980925000951

> <JCHEM_PKA_STRONGEST_ACIDIC>
9.638665377142802

> <JCHEM_PKA_STRONGEST_BASIC>
-4.1593850557448215

> <JCHEM_POLAR_SURFACE_AREA>
140.98000000000002

> <JCHEM_REFRACTIVITY>
124.07009999999998

> <JCHEM_ROTATABLE_BOND_COUNT>
10

> <JCHEM_RULE_OF_FIVE>
1

> <JCHEM_TRADITIONAL_IUPAC>
(2E)-3-[(2R,3S)-3-[(acetyloxy)methyl]-2,3-dihydroxy-2-(4-hydroxy-3-methoxyphenyl)-8-methoxy-4H-1-benzopyran-6-yl]prop-2-en-1-yl acetate

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 04-SEP-22   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   04-SEP-22         0                                  
HETATM    1  C   UNK     0      -5.947  -7.186   0.000  0.00  0.00           C+0
HETATM    2  O   UNK     0      -5.420  -5.739   0.000  0.00  0.00           O+0
HETATM    3  C   UNK     0      -3.904  -5.472   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0      -3.377  -4.025   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0      -1.860  -3.757   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0      -1.334  -2.310   0.000  0.00  0.00           C+0
HETATM    7  O   UNK     0      -2.850  -2.043   0.000  0.00  0.00           O+0
HETATM    8  O   UNK     0       0.000  -3.080   0.000  0.00  0.00           O+0
HETATM    9  C   UNK     0       1.334  -2.310   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0       1.334  -0.770   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0       2.667  -0.000   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0       4.001  -0.770   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0       5.335  -0.000   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0       6.668  -0.770   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0       8.002  -0.000   0.000  0.00  0.00           C+0
HETATM   16  O   UNK     0       8.002   1.540   0.000  0.00  0.00           O+0
HETATM   17  C   UNK     0       9.336   2.310   0.000  0.00  0.00           C+0
HETATM   18  C   UNK     0       9.336   3.850   0.000  0.00  0.00           C+0
HETATM   19  O   UNK     0      10.669   1.540   0.000  0.00  0.00           O+0
HETATM   20  C   UNK     0       4.001  -2.310   0.000  0.00  0.00           C+0
HETATM   21  C   UNK     0       2.667  -3.080   0.000  0.00  0.00           C+0
HETATM   22  O   UNK     0       2.667  -4.620   0.000  0.00  0.00           O+0
HETATM   23  C   UNK     0       1.334  -5.390   0.000  0.00  0.00           C+0
HETATM   24  C   UNK     0       0.000  -0.000   0.000  0.00  0.00           C+0
HETATM   25  C   UNK     0      -1.334  -0.770   0.000  0.00  0.00           C+0
HETATM   26  O   UNK     0      -2.150   0.536   0.000  0.00  0.00           O+0
HETATM   27  C   UNK     0      -2.873  -0.716   0.000  0.00  0.00           C+0
HETATM   28  O   UNK     0      -3.689  -2.022   0.000  0.00  0.00           O+0
HETATM   29  C   UNK     0      -5.228  -1.969   0.000  0.00  0.00           C+0
HETATM   30  C   UNK     0      -6.044  -3.274   0.000  0.00  0.00           C+0
HETATM   31  O   UNK     0      -5.951  -0.609   0.000  0.00  0.00           O+0
HETATM   32  C   UNK     0      -0.870  -4.937   0.000  0.00  0.00           C+0
HETATM   33  C   UNK     0      -1.397  -6.384   0.000  0.00  0.00           C+0
HETATM   34  C   UNK     0      -2.914  -6.651   0.000  0.00  0.00           C+0
HETATM   35  O   UNK     0      -3.441  -8.099   0.000  0.00  0.00           O+0
CONECT    1    2                                                            
CONECT    2    1    3                                                       
CONECT    3    2    4   34                                                  
CONECT    4    3    5                                                       
CONECT    5    4    6   32                                                  
CONECT    6    5    7    8   25                                             
CONECT    7    6                                                            
CONECT    8    6    9                                                       
CONECT    9    8   10   21                                                  
CONECT   10    9   11   24                                                  
CONECT   11   10   12                                                       
CONECT   12   11   13   20                                                  
CONECT   13   12   14                                                       
CONECT   14   13   15                                                       
CONECT   15   14   16                                                       
CONECT   16   15   17                                                       
CONECT   17   16   18   19                                                  
CONECT   18   17                                                            
CONECT   19   17                                                            
CONECT   20   12   21                                                       
CONECT   21   20    9   22                                                  
CONECT   22   21   23                                                       
CONECT   23   22                                                            
CONECT   24   10   25                                                       
CONECT   25   24    6   26   27                                             
CONECT   26   25                                                            
CONECT   27   25   28                                                       
CONECT   28   27   29                                                       
CONECT   29   28   30   31                                                  
CONECT   30   29                                                            
CONECT   31   29                                                            
CONECT   32    5   33                                                       
CONECT   33   32   34                                                       
CONECT   34   33    3   35                                                  
CONECT   35   34                                                            
MASTER        0    0    0    0    0    0    0    0   35    0   74    0
END

View in JSmol

Synonyms

Value	Source
(2E)-3-[(2R,3S)-3-[(Acetyloxy)methyl]-2,3-dihydroxy-2-(4-hydroxy-3-methoxyphenyl)-8-methoxy-3,4-dihydro-2H-1-benzopyran-6-yl]prop-2-en-1-yl acetic acid	Generator

Chemical Formula

C₂₅H₂₈O₁₀

Average Mass

488.4890 Da

Monoisotopic Mass

488.16825 Da

IUPAC Name

(2E)-3-[(2R,3S)-3-[(acetyloxy)methyl]-2,3-dihydroxy-2-(4-hydroxy-3-methoxyphenyl)-8-methoxy-3,4-dihydro-2H-1-benzopyran-6-yl]prop-2-en-1-yl acetate

Traditional Name

(2E)-3-[(2R,3S)-3-[(acetyloxy)methyl]-2,3-dihydroxy-2-(4-hydroxy-3-methoxyphenyl)-8-methoxy-4H-1-benzopyran-6-yl]prop-2-en-1-yl acetate

CAS Registry Number

Not Available

SMILES

COC1=CC(=CC=C1O)[C@@]1(O)OC2=C(C[C@]1(O)COC(C)=O)C=C(\C=C\COC(C)=O)C=C2OC

InChI Identifier

InChI=1S/C25H28O10/c1-15(26)33-9-5-6-17-10-18-13-24(29,14-34-16(2)27)25(30,35-23(18)22(11-17)32-4)19-7-8-20(28)21(12-19)31-3/h5-8,10-12,28-30H,9,13-14H2,1-4H3/b6-5+/t24-,25+/m0/s1

InChI Key

ZOOQSYSDJPCTCO-BUMFPCDBSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Limonia acidissima	LOTUS Database	35616633

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as 8-o-methylated flavonoids. These are flavonoids with methoxy groups attached to the C8 atom of the flavonoid backbone.

Kingdom

Organic compounds

Super Class

Phenylpropanoids and polyketides

Class

Flavonoids

Sub Class

O-methylated flavonoids

Direct Parent

8-O-methylated flavonoids

Alternative Parents

Substituents

3p-methoxyflavonoid-skeleton
8-methoxyflavonoid-skeleton
Hydroxyflavonoid
3-hydroxyflavonoid
4'-hydroxyflavonoid
Flavan
Methoxyphenol
Benzopyran
Chromane
1-benzopyran
Phenoxy compound
Methoxybenzene
Phenol ether
Anisole
Styrene
Phenol
Alkyl aryl ether
1-hydroxy-2-unsubstituted benzenoid
Benzenoid
Monocyclic benzene moiety
Dicarboxylic acid or derivatives
Tertiary alcohol
Carboxylic acid ester
Hemiacetal
Carboxylic acid derivative
Organoheterocyclic compound
Oxacycle
Ether
Carbonyl group
Organooxygen compound
Organic oxide
Organic oxygen compound
Alcohol
Hydrocarbon derivative
Aromatic heteropolycyclic compound

Molecular Framework

Aromatic heteropolycyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	2.16	ChemAxon
pKa (Strongest Acidic)	9.64	ChemAxon
pKa (Strongest Basic)	-4.2	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	8	ChemAxon
Hydrogen Donor Count	3	ChemAxon
Polar Surface Area	140.98 Å²	ChemAxon
Rotatable Bond Count	10	ChemAxon
Refractivity	124.07 m³·mol⁻¹	ChemAxon
Polarizability	50.88 Å³	ChemAxon
Number of Rings	3	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	No	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	Yes	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

Not Available

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

163193888

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

LOTUS database [Link]

Showing NP-Card for (2e)-3-[(2r,3s)-3-[(acetyloxy)methyl]-2,3-dihydroxy-2-(4-hydroxy-3-methoxyphenyl)-8-methoxy-4h-1-benzopyran-6-yl]prop-2-en-1-yl acetate (NP0192039)

MOL for NP0192039 ((2e)-3-[(2r,3s)-3-[(acetyloxy)methyl]-2,3-dihydroxy-2-(4-hydroxy-3-methoxyphenyl)-8-methoxy-4h-1-benzopyran-6-yl]prop-2-en-1-yl acetate)

3D MOL for NP0192039 ((2e)-3-[(2r,3s)-3-[(acetyloxy)methyl]-2,3-dihydroxy-2-(4-hydroxy-3-methoxyphenyl)-8-methoxy-4h-1-benzopyran-6-yl]prop-2-en-1-yl acetate)

3D SDF for NP0192039 ((2e)-3-[(2r,3s)-3-[(acetyloxy)methyl]-2,3-dihydroxy-2-(4-hydroxy-3-methoxyphenyl)-8-methoxy-4h-1-benzopyran-6-yl]prop-2-en-1-yl acetate)

3D-SDF for NP0192039 ((2e)-3-[(2r,3s)-3-[(acetyloxy)methyl]-2,3-dihydroxy-2-(4-hydroxy-3-methoxyphenyl)-8-methoxy-4h-1-benzopyran-6-yl]prop-2-en-1-yl acetate)

PDB for NP0192039 ((2e)-3-[(2r,3s)-3-[(acetyloxy)methyl]-2,3-dihydroxy-2-(4-hydroxy-3-methoxyphenyl)-8-methoxy-4h-1-benzopyran-6-yl]prop-2-en-1-yl acetate)

3D PDB for NP0192039 ((2e)-3-[(2r,3s)-3-[(acetyloxy)methyl]-2,3-dihydroxy-2-(4-hydroxy-3-methoxyphenyl)-8-methoxy-4h-1-benzopyran-6-yl]prop-2-en-1-yl acetate)

SMILES for NP0192039 ((2e)-3-[(2r,3s)-3-[(acetyloxy)methyl]-2,3-dihydroxy-2-(4-hydroxy-3-methoxyphenyl)-8-methoxy-4h-1-benzopyran-6-yl]prop-2-en-1-yl acetate)

INCHI for NP0192039 ((2e)-3-[(2r,3s)-3-[(acetyloxy)methyl]-2,3-dihydroxy-2-(4-hydroxy-3-methoxyphenyl)-8-methoxy-4h-1-benzopyran-6-yl]prop-2-en-1-yl acetate)

Structure for NP0192039 ((2e)-3-[(2r,3s)-3-[(acetyloxy)methyl]-2,3-dihydroxy-2-(4-hydroxy-3-methoxyphenyl)-8-methoxy-4h-1-benzopyran-6-yl]prop-2-en-1-yl acetate)

3D Structure for NP0192039 ((2e)-3-[(2r,3s)-3-[(acetyloxy)methyl]-2,3-dihydroxy-2-(4-hydroxy-3-methoxyphenyl)-8-methoxy-4h-1-benzopyran-6-yl]prop-2-en-1-yl acetate)