NP-MRD: Showing NP-Card for (2r,3s,4r,5r,6s)-2-(hydroxymethyl)-6-({7-methoxy-1-methyl-3h,4h,9h-pyrido[3,4-b]indol-8-yl}oxy)oxane-3,4,5-triol (NP0191323)

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Record Information

Version

2.0

Created at

2022-09-04 08:14:24 UTC

Updated at

2022-09-04 08:14:24 UTC

NP-MRD ID

NP0191323

Secondary Accession Numbers

None

Natural Product Identification

Common Name

(2r,3s,4r,5r,6s)-2-(hydroxymethyl)-6-({7-methoxy-1-methyl-3h,4h,9h-pyrido[3,4-b]indol-8-yl}oxy)oxane-3,4,5-triol

Description

(2R,3S,4R,5R,6S)-2-(hydroxymethyl)-6-({7-methoxy-1-methyl-3H,4H,9H-pyrido[3,4-b]indol-8-yl}oxy)oxane-3,4,5-triol belongs to the class of organic compounds known as harmala alkaloids. Harmala alkaloids are compounds with a structure based on harmaline, harmine, harmalol, harman or a derivative of those parents. These parents are beta-carbolines, consisting of a pyrimidine fused to the pyrrole moiety of an indole to form a pyrido[3,4-b]indole. (2r,3s,4r,5r,6s)-2-(hydroxymethyl)-6-({7-methoxy-1-methyl-3h,4h,9h-pyrido[3,4-b]indol-8-yl}oxy)oxane-3,4,5-triol is found in Peganum harmala. Based on a literature review very few articles have been published on (2R,3S,4R,5R,6S)-2-(hydroxymethyl)-6-({7-methoxy-1-methyl-3H,4H,9H-pyrido[3,4-b]indol-8-yl}oxy)oxane-3,4,5-triol.

Structure

MOL 3D MOL SDF PDB SMILES InChI


  Mrv1652309042210142D          

 28 31  0  0  1  0            999 V2000
   -1.9586   -2.2432    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4066   -1.6301    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5996   -1.8016    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3446   -2.5862    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.4623   -2.7578    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.0144   -2.1447    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.8394   -2.1447    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.0943   -1.3601    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4269   -0.8751    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    0.7594   -1.3601    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0476   -1.1885    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3025   -0.4039    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1095   -0.2324    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
   -1.6615   -0.8455    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4685   -0.6739    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
   -3.0205   -1.2870    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.8275   -1.1155    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7234    0.1107    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   -3.5304    0.2822    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1714    0.7238    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   -2.4263    1.5084    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3644    0.5522    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   -0.8124    1.1653    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.9013   -1.1885    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.1562   -0.4039    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.4533   -1.8016    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    3.1984   -2.5862    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.3914   -2.7578    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  1  0  0  0  0
  3  4  2  0  0  0  0
  4  5  1  0  0  0  0
  5  6  2  0  0  0  0
  6  7  1  0  0  0  0
  7  8  2  0  0  0  0
  8  9  1  0  0  0  0
  9 10  1  0  0  0  0
  6 10  1  0  0  0  0
 10 11  2  0  0  0  0
  3 11  1  0  0  0  0
 11 12  1  0  0  0  0
 13 12  1  6  0  0  0
 13 14  1  0  0  0  0
 14 15  1  0  0  0  0
 15 16  1  6  0  0  0
 16 17  1  0  0  0  0
 15 18  1  0  0  0  0
 18 19  1  1  0  0  0
 18 20  1  0  0  0  0
 20 21  1  1  0  0  0
 20 22  1  0  0  0  0
 13 22  1  0  0  0  0
 22 23  1  1  0  0  0
  8 24  1  0  0  0  0
 24 25  1  0  0  0  0
 24 26  2  0  0  0  0
 26 27  1  0  0  0  0
 27 28  1  0  0  0  0
  7 28  1  0  0  0  0
M  END

     RDKit          3D

 52 55  0  0  0  0  0  0  0  0999 V2000
   -0.0534   -4.6449   -1.7508 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1376   -3.2219   -1.6380 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7444   -2.6687   -0.4981 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2554   -3.4661    0.5044 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8488   -2.8575    1.6169 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9190   -1.4845    1.7049 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4356   -0.5938    2.6617 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2348    0.7022    2.2353 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6145    0.6242    1.0533 N   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4166   -0.6642    0.7183 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8358   -1.2997   -0.3693 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3306   -0.4620   -1.3618 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.0076    0.0095   -1.3387 C   0  0  2  0  0  0  0  0  0  0  0  0
    1.0364    1.4031   -1.1285 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.3598    1.7916   -1.2708 C   0  0  2  0  0  0  0  0  0  0  0  0
    2.6280    3.0989   -0.5211 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.9616    3.4653   -0.6809 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.6526    1.9586   -2.7288 C   0  0  1  0  0  0  0  0  0  0  0  0
    3.9870    2.1560   -3.0188 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.0594    0.7776   -3.4662 C   0  0  1  0  0  0  0  0  0  0  0  0
    2.8600    0.3971   -4.5178 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.7947   -0.3921   -2.5451 C   0  0  1  0  0  0  0  0  0  0  0  0
    2.9603   -1.0426   -2.1595 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.6891    1.8098    3.0694 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4462    3.2048    2.5582 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.2563    1.5612    4.1645 N   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5172    0.2745    4.7072 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.0947   -0.9240    3.9279 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.5089   -4.9392   -2.6485 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1000   -4.9880   -1.8995 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.3333   -5.1147   -0.8246 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1855   -4.5404    0.4063 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2556   -3.4544    2.4135 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3281    1.4479    0.4788 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.4870   -0.4220   -0.4163 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.0040    1.0167   -0.8058 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.4148    2.9809    0.5523 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.0237    3.9112   -0.9880 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.5050    2.7048   -0.3198 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.1122    2.8821   -3.0717 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.4663    1.3430   -3.2770 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.0544    1.0564   -3.8956 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.8527    1.1449   -5.1769 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.1786   -1.1177   -3.1386 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.5054   -1.3506   -2.9065 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5024    3.5993    2.9797 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3450    3.2104    1.4598 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.3074    3.8218    2.8464 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9340    0.2520    5.6957 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.6150    0.1748    4.9790 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3768   -1.5251    4.5703 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.9739   -1.6064    3.7749 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  3  4  2  0
  4  5  1  0
  5  6  2  0
  6  7  1  0
  7  8  2  0
  8  9  1  0
  9 10  1  0
 10 11  2  0
 11 12  1  0
 12 13  1  0
 13 14  1  0
 14 15  1  0
 15 16  1  0
 16 17  1  0
 15 18  1  0
 18 19  1  0
 18 20  1  0
 20 21  1  0
 20 22  1  0
 22 23  1  0
  8 24  1  0
 24 25  1  0
 24 26  2  0
 26 27  1  0
 27 28  1  0
 11  3  1  0
 22 13  1  0
 10  6  1  0
 28  7  1  0
  1 29  1  0
  1 30  1  0
  1 31  1  0
  4 32  1  0
  5 33  1  0
  9 34  1  0
 13 35  1  1
 15 36  1  1
 16 37  1  0
 16 38  1  0
 17 39  1  0
 18 40  1  6
 19 41  1  0
 20 42  1  6
 21 43  1  0
 22 44  1  6
 23 45  1  0
 25 46  1  0
 25 47  1  0
 25 48  1  0
 27 49  1  0
 27 50  1  0
 28 51  1  0
 28 52  1  0
M  END


  Mrv1652309042210142D          

 28 31  0  0  1  0            999 V2000
   -1.9586   -2.2432    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4066   -1.6301    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5996   -1.8016    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3446   -2.5862    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.4623   -2.7578    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.0144   -2.1447    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.8394   -2.1447    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.0943   -1.3601    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4269   -0.8751    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    0.7594   -1.3601    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0476   -1.1885    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3025   -0.4039    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1095   -0.2324    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
   -1.6615   -0.8455    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4685   -0.6739    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
   -3.0205   -1.2870    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.8275   -1.1155    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7234    0.1107    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   -3.5304    0.2822    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1714    0.7238    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   -2.4263    1.5084    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3644    0.5522    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   -0.8124    1.1653    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.9013   -1.1885    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.1562   -0.4039    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.4533   -1.8016    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    3.1984   -2.5862    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.3914   -2.7578    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  1  0  0  0  0
  3  4  2  0  0  0  0
  4  5  1  0  0  0  0
  5  6  2  0  0  0  0
  6  7  1  0  0  0  0
  7  8  2  0  0  0  0
  8  9  1  0  0  0  0
  9 10  1  0  0  0  0
  6 10  1  0  0  0  0
 10 11  2  0  0  0  0
  3 11  1  0  0  0  0
 11 12  1  0  0  0  0
 13 12  1  6  0  0  0
 13 14  1  0  0  0  0
 14 15  1  0  0  0  0
 15 16  1  6  0  0  0
 16 17  1  0  0  0  0
 15 18  1  0  0  0  0
 18 19  1  1  0  0  0
 18 20  1  0  0  0  0
 20 21  1  1  0  0  0
 20 22  1  0  0  0  0
 13 22  1  0  0  0  0
 22 23  1  1  0  0  0
  8 24  1  0  0  0  0
 24 25  1  0  0  0  0
 24 26  2  0  0  0  0
 26 27  1  0  0  0  0
 27 28  1  0  0  0  0
  7 28  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0191323

> <DATABASE_NAME>
NP-MRD

> <SMILES>
COC1=CC=C2C3=C(NC2=C1O[C@@H]1O[C@H](CO)[C@@H](O)[C@@H](O)[C@H]1O)C(C)=NCC3

> <INCHI_IDENTIFIER>
InChI=1S/C19H24N2O7/c1-8-13-10(5-6-20-8)9-3-4-11(26-2)18(14(9)21-13)28-19-17(25)16(24)15(23)12(7-22)27-19/h3-4,12,15-17,19,21-25H,5-7H2,1-2H3/t12-,15-,16-,17-,19+/m1/s1

> <INCHI_KEY>
FJWRFZWSBCNWOG-HDFAOYPMSA-N

> <FORMULA>
C19H24N2O7

> <MOLECULAR_WEIGHT>
392.408

> <EXACT_MASS>
392.158351121

> <JCHEM_ACCEPTOR_COUNT>
8

> <JCHEM_ATOM_COUNT>
52

> <JCHEM_AVERAGE_POLARIZABILITY>
39.76732916999956

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
5

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
(2R,3S,4R,5R,6S)-2-(hydroxymethyl)-6-({7-methoxy-1-methyl-3H,4H,9H-pyrido[3,4-b]indol-8-yl}oxy)oxane-3,4,5-triol

> <JCHEM_LOGP>
-0.903422144

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
4

> <JCHEM_PHYSIOLOGICAL_CHARGE>
1

> <JCHEM_PKA>
13.141375012295544

> <JCHEM_PKA_STRONGEST_ACIDIC>
12.19319716310819

> <JCHEM_PKA_STRONGEST_BASIC>
7.440186277906672

> <JCHEM_POLAR_SURFACE_AREA>
136.76000000000002

> <JCHEM_REFRACTIVITY>
98.27670000000002

> <JCHEM_ROTATABLE_BOND_COUNT>
4

> <JCHEM_RULE_OF_FIVE>
1

> <JCHEM_TRADITIONAL_IUPAC>
(2R,3S,4R,5R,6S)-2-(hydroxymethyl)-6-({7-methoxy-1-methyl-3H,4H,9H-pyrido[3,4-b]indol-8-yl}oxy)oxane-3,4,5-triol

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 04-SEP-22   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   04-SEP-22         0                                  
HETATM    1  C   UNK     0      -3.656  -4.187   0.000  0.00  0.00           C+0
HETATM    2  O   UNK     0      -2.626  -3.043   0.000  0.00  0.00           O+0
HETATM    3  C   UNK     0      -1.119  -3.363   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0      -0.643  -4.828   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0       0.863  -5.148   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0       1.893  -4.003   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0       3.433  -4.003   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0       3.909  -2.539   0.000  0.00  0.00           C+0
HETATM    9  N   UNK     0       2.663  -1.634   0.000  0.00  0.00           N+0
HETATM   10  C   UNK     0       1.418  -2.539   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0      -0.089  -2.219   0.000  0.00  0.00           C+0
HETATM   12  O   UNK     0      -0.565  -0.754   0.000  0.00  0.00           O+0
HETATM   13  C   UNK     0      -2.071  -0.434   0.000  0.00  0.00           C+0
HETATM   14  O   UNK     0      -3.101  -1.578   0.000  0.00  0.00           O+0
HETATM   15  C   UNK     0      -4.608  -1.258   0.000  0.00  0.00           C+0
HETATM   16  C   UNK     0      -5.638  -2.402   0.000  0.00  0.00           C+0
HETATM   17  O   UNK     0      -7.145  -2.082   0.000  0.00  0.00           O+0
HETATM   18  C   UNK     0      -5.084   0.207   0.000  0.00  0.00           C+0
HETATM   19  O   UNK     0      -6.590   0.527   0.000  0.00  0.00           O+0
HETATM   20  C   UNK     0      -4.053   1.351   0.000  0.00  0.00           C+0
HETATM   21  O   UNK     0      -4.529   2.816   0.000  0.00  0.00           O+0
HETATM   22  C   UNK     0      -2.547   1.031   0.000  0.00  0.00           C+0
HETATM   23  O   UNK     0      -1.516   2.175   0.000  0.00  0.00           O+0
HETATM   24  C   UNK     0       5.416  -2.219   0.000  0.00  0.00           C+0
HETATM   25  C   UNK     0       5.892  -0.754   0.000  0.00  0.00           C+0
HETATM   26  N   UNK     0       6.446  -3.363   0.000  0.00  0.00           N+0
HETATM   27  C   UNK     0       5.970  -4.828   0.000  0.00  0.00           C+0
HETATM   28  C   UNK     0       4.464  -5.148   0.000  0.00  0.00           C+0
CONECT    1    2                                                            
CONECT    2    1    3                                                       
CONECT    3    2    4   11                                                  
CONECT    4    3    5                                                       
CONECT    5    4    6                                                       
CONECT    6    5    7   10                                                  
CONECT    7    6    8   28                                                  
CONECT    8    7    9   24                                                  
CONECT    9    8   10                                                       
CONECT   10    9    6   11                                                  
CONECT   11   10    3   12                                                  
CONECT   12   11   13                                                       
CONECT   13   12   14   22                                                  
CONECT   14   13   15                                                       
CONECT   15   14   16   18                                                  
CONECT   16   15   17                                                       
CONECT   17   16                                                            
CONECT   18   15   19   20                                                  
CONECT   19   18                                                            
CONECT   20   18   21   22                                                  
CONECT   21   20                                                            
CONECT   22   20   13   23                                                  
CONECT   23   22                                                            
CONECT   24    8   25   26                                                  
CONECT   25   24                                                            
CONECT   26   24   27                                                       
CONECT   27   26   28                                                       
CONECT   28   27    7                                                       
MASTER        0    0    0    0    0    0    0    0   28    0   62    0
END

View in JSmol

Synonyms

Not Available

Chemical Formula

C₁₉H₂₄N₂O₇

Average Mass

392.4080 Da

Monoisotopic Mass

392.15835 Da

IUPAC Name

(2R,3S,4R,5R,6S)-2-(hydroxymethyl)-6-({7-methoxy-1-methyl-3H,4H,9H-pyrido[3,4-b]indol-8-yl}oxy)oxane-3,4,5-triol

Traditional Name

(2R,3S,4R,5R,6S)-2-(hydroxymethyl)-6-({7-methoxy-1-methyl-3H,4H,9H-pyrido[3,4-b]indol-8-yl}oxy)oxane-3,4,5-triol

CAS Registry Number

Not Available

SMILES

COC1=CC=C2C3=C(NC2=C1O[C@@H]1O[C@H](CO)[C@@H](O)[C@@H](O)[C@H]1O)C(C)=NCC3

InChI Identifier

InChI=1S/C19H24N2O7/c1-8-13-10(5-6-20-8)9-3-4-11(26-2)18(14(9)21-13)28-19-17(25)16(24)15(23)12(7-22)27-19/h3-4,12,15-17,19,21-25H,5-7H2,1-2H3/t12-,15-,16-,17-,19+/m1/s1

InChI Key

FJWRFZWSBCNWOG-HDFAOYPMSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Peganum harmala	LOTUS Database	35616633

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as harmala alkaloids. Harmala alkaloids are compounds with a structure based on harmaline, harmine, harmalol, harman or a derivative of those parents. These parents are beta-carbolines, consisting of a pyrimidine fused to the pyrrole moiety of an indole to form a pyrido[3,4-b]indole.

Kingdom

Organic compounds

Super Class

Alkaloids and derivatives

Class

Harmala alkaloids

Sub Class

Not Available

Direct Parent

Harmala alkaloids

Alternative Parents

Substituents

Harmaline
Phenolic glycoside
Harman
Beta-carboline
Pyridoindole
Hexose monosaccharide
Glycosyl compound
O-glycosyl compound
3-alkylindole
Indole
Indole or derivatives
Anisole
Alkyl aryl ether
Monosaccharide
Oxane
Benzenoid
Pyrrole
Heteroaromatic compound
Secondary alcohol
Ketimine
Polyol
Ether
Propargyl-type 1,3-dipolar organic compound
Acetal
Organic 1,3-dipolar compound
Organoheterocyclic compound
Oxacycle
Azacycle
Primary alcohol
Imine
Organonitrogen compound
Hydrocarbon derivative
Organooxygen compound
Organopnictogen compound
Organic oxygen compound
Organic nitrogen compound
Alcohol
Aromatic heteropolycyclic compound

Molecular Framework

Aromatic heteropolycyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	-0.9	ChemAxon
pKa (Strongest Acidic)	12.19	ChemAxon
pKa (Strongest Basic)	7.44	ChemAxon
Physiological Charge	1	ChemAxon
Hydrogen Acceptor Count	8	ChemAxon
Hydrogen Donor Count	5	ChemAxon
Polar Surface Area	136.76 Å²	ChemAxon
Rotatable Bond Count	4	ChemAxon
Refractivity	98.28 m³·mol⁻¹	ChemAxon
Polarizability	39.77 Å³	ChemAxon
Number of Rings	4	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	No	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

Not Available

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

163190288

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

LOTUS database [Link]

Showing NP-Card for (2r,3s,4r,5r,6s)-2-(hydroxymethyl)-6-({7-methoxy-1-methyl-3h,4h,9h-pyrido[3,4-b]indol-8-yl}oxy)oxane-3,4,5-triol (NP0191323)

MOL for NP0191323 ((2r,3s,4r,5r,6s)-2-(hydroxymethyl)-6-({7-methoxy-1-methyl-3h,4h,9h-pyrido[3,4-b]indol-8-yl}oxy)oxane-3,4,5-triol)

3D MOL for NP0191323 ((2r,3s,4r,5r,6s)-2-(hydroxymethyl)-6-({7-methoxy-1-methyl-3h,4h,9h-pyrido[3,4-b]indol-8-yl}oxy)oxane-3,4,5-triol)

3D SDF for NP0191323 ((2r,3s,4r,5r,6s)-2-(hydroxymethyl)-6-({7-methoxy-1-methyl-3h,4h,9h-pyrido[3,4-b]indol-8-yl}oxy)oxane-3,4,5-triol)

3D-SDF for NP0191323 ((2r,3s,4r,5r,6s)-2-(hydroxymethyl)-6-({7-methoxy-1-methyl-3h,4h,9h-pyrido[3,4-b]indol-8-yl}oxy)oxane-3,4,5-triol)

PDB for NP0191323 ((2r,3s,4r,5r,6s)-2-(hydroxymethyl)-6-({7-methoxy-1-methyl-3h,4h,9h-pyrido[3,4-b]indol-8-yl}oxy)oxane-3,4,5-triol)

3D PDB for NP0191323 ((2r,3s,4r,5r,6s)-2-(hydroxymethyl)-6-({7-methoxy-1-methyl-3h,4h,9h-pyrido[3,4-b]indol-8-yl}oxy)oxane-3,4,5-triol)

SMILES for NP0191323 ((2r,3s,4r,5r,6s)-2-(hydroxymethyl)-6-({7-methoxy-1-methyl-3h,4h,9h-pyrido[3,4-b]indol-8-yl}oxy)oxane-3,4,5-triol)

INCHI for NP0191323 ((2r,3s,4r,5r,6s)-2-(hydroxymethyl)-6-({7-methoxy-1-methyl-3h,4h,9h-pyrido[3,4-b]indol-8-yl}oxy)oxane-3,4,5-triol)

Structure for NP0191323 ((2r,3s,4r,5r,6s)-2-(hydroxymethyl)-6-({7-methoxy-1-methyl-3h,4h,9h-pyrido[3,4-b]indol-8-yl}oxy)oxane-3,4,5-triol)

3D Structure for NP0191323 ((2r,3s,4r,5r,6s)-2-(hydroxymethyl)-6-({7-methoxy-1-methyl-3h,4h,9h-pyrido[3,4-b]indol-8-yl}oxy)oxane-3,4,5-triol)