NP-MRD: Showing NP-Card for (5z,8r)-8-[(1r,2r)-2-[(1s,2e,4s,6z)-1,4-dihydroxydodeca-2,6-dien-1-yl]cyclopropyl]-3,4,7,8-tetrahydrooxocin-2-one (NP0190756)

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Record Information

Version

2.0

Created at

2022-09-04 07:29:12 UTC

Updated at

2022-09-04 07:29:13 UTC

NP-MRD ID

NP0190756

Secondary Accession Numbers

None

Natural Product Identification

Common Name

(5z,8r)-8-[(1r,2r)-2-[(1s,2e,4s,6z)-1,4-dihydroxydodeca-2,6-dien-1-yl]cyclopropyl]-3,4,7,8-tetrahydrooxocin-2-one

Description

Solandelactone E belongs to the class of organic compounds known as fatty alcohols. These are aliphatic alcohols consisting of a chain of a least six carbon atoms. (5z,8r)-8-[(1r,2r)-2-[(1s,2e,4s,6z)-1,4-dihydroxydodeca-2,6-dien-1-yl]cyclopropyl]-3,4,7,8-tetrahydrooxocin-2-one is found in Solanderia secunda. (5z,8r)-8-[(1r,2r)-2-[(1s,2e,4s,6z)-1,4-dihydroxydodeca-2,6-dien-1-yl]cyclopropyl]-3,4,7,8-tetrahydrooxocin-2-one was first documented in 2007 (PMID: 17227012). Based on a literature review a small amount of articles have been published on Solandelactone E (PMID: 30997906) (PMID: 22258739) (PMID: 20683835) (PMID: 18088137).

Structure

MOL 3D MOL SDF PDB SMILES InChI


  Mrv1652309042209292D          

 26 27  0  0  1  0            999 V2000
    3.2799   -6.6374    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.9944   -7.0499    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.7089   -6.6374    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.4233   -7.0499    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.1378   -6.6374    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.8523   -7.0499    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.5668   -6.6374    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.5668   -5.8124    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.2812   -5.3999    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    8.9957   -5.8124    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    8.2812   -4.5749    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.9957   -4.1624    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.9957   -3.3374    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    8.2812   -2.9249    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    9.7102   -2.9249    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
   10.1227   -2.2105    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   10.5352   -2.9249    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   11.2496   -3.3374    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   11.9042   -2.8352    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   12.7221   -2.9429    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   13.2243   -3.5974    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   13.1166   -4.4154    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   12.4621   -4.9176    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   11.6442   -4.8099    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   11.2317   -5.5244    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   11.1420   -4.1554    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  1  0  0  0  0
  3  4  1  0  0  0  0
  4  5  1  0  0  0  0
  5  6  1  0  0  0  0
  6  7  2  0  0  0  0
  7  8  1  0  0  0  0
  8  9  1  0  0  0  0
  9 10  1  1  0  0  0
  9 11  1  0  0  0  0
 11 12  2  0  0  0  0
 12 13  1  0  0  0  0
 13 14  1  6  0  0  0
 15 13  1  6  0  0  0
 15 16  1  0  0  0  0
 16 17  1  0  0  0  0
 15 17  1  0  0  0  0
 17 18  1  1  0  0  0
 18 19  1  0  0  0  0
 19 20  1  0  0  0  0
 20 21  2  0  0  0  0
 21 22  1  0  0  0  0
 22 23  1  0  0  0  0
 23 24  1  0  0  0  0
 24 25  2  0  0  0  0
 24 26  1  0  0  0  0
 18 26  1  1  0  0  0
M  END

     RDKit          3D

 60 61  0  0  0  0  0  0  0  0999 V2000
    7.7143   -2.8266   -0.6898 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.7725   -1.3356   -0.6868 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.4827   -0.6889   -0.2563 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.0887   -1.0986    1.1460 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.7772   -0.4284    1.5559 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.6733   -0.7919    0.6604 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.9792    0.0518   -0.0593 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.2328    1.5036   -0.0548 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.0316    2.3045    0.4096 C   0  0  2  0  0  0  0  0  0  0  0  0
    1.6291    1.9928    1.6854 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.9312    2.2562   -0.5918 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1923    1.6116   -0.4269 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2285    1.6205   -1.4782 C   0  0  2  0  0  0  0  0  0  0  0  0
   -1.8464    2.8580   -1.5428 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2770    0.5525   -1.2637 C   0  0  2  0  0  0  0  0  0  0  0  0
   -3.3840    0.5212   -2.3378 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.6215    1.0193   -0.9188 C   0  0  1  0  0  0  0  0  0  0  0  0
   -4.5904    0.2223   -0.1210 C   0  0  1  0  0  0  0  0  0  0  0  0
   -4.0843   -0.1163    1.2642 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.2009   -0.6746    2.0475 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.3251   -1.3582    1.9050 C   0  0  0  0  0  0  0  0  0  0  0  0
   -7.0170   -1.9213    0.7259 C   0  0  0  0  0  0  0  0  0  0  0  0
   -7.8556   -0.8574    0.0168 C   0  0  0  0  0  0  0  0  0  0  0  0
   -7.1838    0.4686    0.1711 C   0  0  0  0  0  0  0  0  0  0  0  0
   -7.9512    1.3970    0.5245 O   0  0  0  0  0  0  0  0  0  0  0  0
   -5.8592    0.8416   -0.0108 O   0  0  0  0  0  0  0  0  0  0  0  0
    6.7261   -3.1549   -1.0898 H   0  0  0  0  0  0  0  0  0  0  0  0
    8.5087   -3.1882   -1.3950 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.9363   -3.2941    0.2800 H   0  0  0  0  0  0  0  0  0  0  0  0
    8.6032   -0.9529   -0.0528 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.9518   -1.0077   -1.7435 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.6889    0.4173   -0.2041 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.6845   -0.8222   -0.9829 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.8512   -0.8018    1.8878 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.9892   -2.1972    1.1561 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.8944    0.6225    1.7989 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.5359   -0.9238    2.5508 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.4010   -1.8636    0.5836 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.1716   -0.3597   -0.6931 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.1784    1.8229    0.3961 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.3440    1.7856   -1.1505 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.3794    3.3785    0.4297 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.7132    2.3506    1.8113 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.0838    2.7970   -1.5178 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3669    1.0645    0.4902 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7802    1.4543   -2.4994 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8650    3.2228   -0.6218 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9608   -0.4421   -0.8944 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.3025    1.2433   -3.1554 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.7759   -0.4783   -2.6133 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.8270    2.1290   -0.8862 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.7550   -0.7505   -0.6264 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.3112   -0.9263    1.1648 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.6645    0.7744    1.7779 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.0470   -0.4444    3.1144 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.8588   -1.5504    2.8524 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.3364   -2.4380    0.0210 H   0  0  0  0  0  0  0  0  0  0  0  0
   -7.7330   -2.6881    1.0872 H   0  0  0  0  0  0  0  0  0  0  0  0
   -7.8612   -1.0667   -1.0751 H   0  0  0  0  0  0  0  0  0  0  0  0
   -8.8916   -0.8355    0.3811 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  3  4  1  0
  4  5  1  0
  5  6  1  0
  6  7  2  0
  7  8  1  0
  8  9  1  0
  9 10  1  0
  9 11  1  0
 11 12  2  0
 12 13  1  0
 13 14  1  0
 13 15  1  0
 15 16  1  0
 16 17  1  0
 17 18  1  0
 18 19  1  0
 19 20  1  0
 20 21  2  0
 21 22  1  0
 22 23  1  0
 23 24  1  0
 24 25  2  0
 24 26  1  0
 17 15  1  0
 26 18  1  0
  1 27  1  0
  1 28  1  0
  1 29  1  0
  2 30  1  0
  2 31  1  0
  3 32  1  0
  3 33  1  0
  4 34  1  0
  4 35  1  0
  5 36  1  0
  5 37  1  0
  6 38  1  0
  7 39  1  0
  8 40  1  0
  8 41  1  0
  9 42  1  1
 10 43  1  0
 11 44  1  0
 12 45  1  0
 13 46  1  6
 14 47  1  0
 15 48  1  1
 16 49  1  0
 16 50  1  0
 17 51  1  6
 18 52  1  6
 19 53  1  0
 19 54  1  0
 20 55  1  0
 21 56  1  0
 22 57  1  0
 22 58  1  0
 23 59  1  0
 23 60  1  0
M  END


  Mrv1652309042209292D          

 26 27  0  0  1  0            999 V2000
    3.2799   -6.6374    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.9944   -7.0499    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.7089   -6.6374    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.4233   -7.0499    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.1378   -6.6374    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.8523   -7.0499    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.5668   -6.6374    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.5668   -5.8124    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.2812   -5.3999    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    8.9957   -5.8124    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    8.2812   -4.5749    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.9957   -4.1624    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.9957   -3.3374    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    8.2812   -2.9249    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    9.7102   -2.9249    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
   10.1227   -2.2105    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   10.5352   -2.9249    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   11.2496   -3.3374    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   11.9042   -2.8352    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   12.7221   -2.9429    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   13.2243   -3.5974    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   13.1166   -4.4154    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   12.4621   -4.9176    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   11.6442   -4.8099    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   11.2317   -5.5244    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   11.1420   -4.1554    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  1  0  0  0  0
  3  4  1  0  0  0  0
  4  5  1  0  0  0  0
  5  6  1  0  0  0  0
  6  7  2  0  0  0  0
  7  8  1  0  0  0  0
  8  9  1  0  0  0  0
  9 10  1  1  0  0  0
  9 11  1  0  0  0  0
 11 12  2  0  0  0  0
 12 13  1  0  0  0  0
 13 14  1  6  0  0  0
 15 13  1  6  0  0  0
 15 16  1  0  0  0  0
 16 17  1  0  0  0  0
 15 17  1  0  0  0  0
 17 18  1  1  0  0  0
 18 19  1  0  0  0  0
 19 20  1  0  0  0  0
 20 21  2  0  0  0  0
 21 22  1  0  0  0  0
 22 23  1  0  0  0  0
 23 24  1  0  0  0  0
 24 25  2  0  0  0  0
 24 26  1  0  0  0  0
 18 26  1  1  0  0  0
M  END
> <DATABASE_ID>
NP0190756

> <DATABASE_NAME>
NP-MRD

> <SMILES>
CCCCC\C=C/C[C@H](O)\C=C\[C@H](O)[C@@H]1C[C@H]1[C@H]1C\C=C/CCC(=O)O1

> <INCHI_IDENTIFIER>
InChI=1S/C22H34O4/c1-2-3-4-5-6-8-11-17(23)14-15-20(24)18-16-19(18)21-12-9-7-10-13-22(25)26-21/h6-9,14-15,17-21,23-24H,2-5,10-13,16H2,1H3/b8-6-,9-7-,15-14+/t17-,18+,19+,20-,21+/m0/s1

> <INCHI_KEY>
ZMCHHZFBGBLCJE-WCOPOLSCSA-N

> <FORMULA>
C22H34O4

> <MOLECULAR_WEIGHT>
362.51

> <EXACT_MASS>
362.245709575

> <JCHEM_ACCEPTOR_COUNT>
3

> <JCHEM_ATOM_COUNT>
60

> <JCHEM_AVERAGE_POLARIZABILITY>
42.681527847079124

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
2

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
1

> <JCHEM_IUPAC>
(8R)-8-[(1R,2R)-2-[(1S,2E,4S,6Z)-1,4-dihydroxydodeca-2,6-dien-1-yl]cyclopropyl]-3,4,7,8-tetrahydro-2H-oxocin-2-one

> <JCHEM_LOGP>
4.031442681333332

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
2

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA>
15.03529507509489

> <JCHEM_PKA_STRONGEST_ACIDIC>
14.374493205582922

> <JCHEM_PKA_STRONGEST_BASIC>
-2.8708353725102382

> <JCHEM_POLAR_SURFACE_AREA>
66.76

> <JCHEM_REFRACTIVITY>
107.18669999999999

> <JCHEM_ROTATABLE_BOND_COUNT>
10

> <JCHEM_RULE_OF_FIVE>
1

> <JCHEM_TRADITIONAL_IUPAC>
(8R)-8-[(1R,2R)-2-[(1S,2E,4S,6Z)-1,4-dihydroxydodeca-2,6-dien-1-yl]cyclopropyl]-3,4,7,8-tetrahydrooxocin-2-one

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 04-SEP-22   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   04-SEP-22         0                                  
HETATM    1  C   UNK     0       6.123 -12.390   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0       7.456 -13.160   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0       8.790 -12.390   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0      10.124 -13.160   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0      11.457 -12.390   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0      12.791 -13.160   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0      14.125 -12.390   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0      14.125 -10.850   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0      15.458 -10.080   0.000  0.00  0.00           C+0
HETATM   10  O   UNK     0      16.792 -10.850   0.000  0.00  0.00           O+0
HETATM   11  C   UNK     0      15.458  -8.540   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0      16.792  -7.770   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0      16.792  -6.230   0.000  0.00  0.00           C+0
HETATM   14  O   UNK     0      15.458  -5.460   0.000  0.00  0.00           O+0
HETATM   15  C   UNK     0      18.126  -5.460   0.000  0.00  0.00           C+0
HETATM   16  C   UNK     0      18.896  -4.126   0.000  0.00  0.00           C+0
HETATM   17  C   UNK     0      19.666  -5.460   0.000  0.00  0.00           C+0
HETATM   18  C   UNK     0      20.999  -6.230   0.000  0.00  0.00           C+0
HETATM   19  C   UNK     0      22.221  -5.292   0.000  0.00  0.00           C+0
HETATM   20  C   UNK     0      23.748  -5.493   0.000  0.00  0.00           C+0
HETATM   21  C   UNK     0      24.685  -6.715   0.000  0.00  0.00           C+0
HETATM   22  C   UNK     0      24.484  -8.242   0.000  0.00  0.00           C+0
HETATM   23  C   UNK     0      23.263  -9.179   0.000  0.00  0.00           C+0
HETATM   24  C   UNK     0      21.736  -8.978   0.000  0.00  0.00           C+0
HETATM   25  O   UNK     0      20.966 -10.312   0.000  0.00  0.00           O+0
HETATM   26  O   UNK     0      20.798  -7.757   0.000  0.00  0.00           O+0
CONECT    1    2                                                            
CONECT    2    1    3                                                       
CONECT    3    2    4                                                       
CONECT    4    3    5                                                       
CONECT    5    4    6                                                       
CONECT    6    5    7                                                       
CONECT    7    6    8                                                       
CONECT    8    7    9                                                       
CONECT    9    8   10   11                                                  
CONECT   10    9                                                            
CONECT   11    9   12                                                       
CONECT   12   11   13                                                       
CONECT   13   12   14   15                                                  
CONECT   14   13                                                            
CONECT   15   13   16   17                                                  
CONECT   16   15   17                                                       
CONECT   17   16   15   18                                                  
CONECT   18   17   19   26                                                  
CONECT   19   18   20                                                       
CONECT   20   19   21                                                       
CONECT   21   20   22                                                       
CONECT   22   21   23                                                       
CONECT   23   22   24                                                       
CONECT   24   23   25   26                                                  
CONECT   25   24                                                            
CONECT   26   24   18                                                       
MASTER        0    0    0    0    0    0    0    0   26    0   54    0
END

View in JSmol

Synonyms

Not Available

Chemical Formula

C₂₂H₃₄O₄

Average Mass

362.5100 Da

Monoisotopic Mass

362.24571 Da

IUPAC Name

(8R)-8-[(1R,2R)-2-[(1S,2E,4S,6Z)-1,4-dihydroxydodeca-2,6-dien-1-yl]cyclopropyl]-3,4,7,8-tetrahydro-2H-oxocin-2-one

Traditional Name

(8R)-8-[(1R,2R)-2-[(1S,2E,4S,6Z)-1,4-dihydroxydodeca-2,6-dien-1-yl]cyclopropyl]-3,4,7,8-tetrahydrooxocin-2-one

CAS Registry Number

Not Available

SMILES

CCCCC\C=C/C[C@H](O)\C=C\[C@H](O)[C@@H]1C[C@H]1[C@H]1C\C=C/CCC(=O)O1

InChI Identifier

InChI=1S/C22H34O4/c1-2-3-4-5-6-8-11-17(23)14-15-20(24)18-16-19(18)21-12-9-7-10-13-22(25)26-21/h6-9,14-15,17-21,23-24H,2-5,10-13,16H2,1H3/b8-6-,9-7-,15-14+/t17-,18+,19+,20-,21+/m0/s1

InChI Key

ZMCHHZFBGBLCJE-WCOPOLSCSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Solanderia secunda	LOTUS Database	35616633

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as fatty alcohols. These are aliphatic alcohols consisting of a chain of a least six carbon atoms.

Kingdom

Organic compounds

Super Class

Lipids and lipid-like molecules

Class

Fatty Acyls

Sub Class

Fatty alcohols

Direct Parent

Fatty alcohols

Alternative Parents

Substituents

Fatty alcohol
Oxocin
Carboxylic acid ester
Lactone
Secondary alcohol
Carboxylic acid derivative
Monocarboxylic acid or derivatives
Oxacycle
Organoheterocyclic compound
Hydrocarbon derivative
Organic oxide
Organic oxygen compound
Organooxygen compound
Carbonyl group
Alcohol
Aliphatic heteromonocyclic compound

Molecular Framework

Aliphatic heteromonocyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	4.03	ChemAxon
pKa (Strongest Acidic)	14.37	ChemAxon
pKa (Strongest Basic)	-2.9	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	3	ChemAxon
Hydrogen Donor Count	2	ChemAxon
Polar Surface Area	66.76 Å²	ChemAxon
Rotatable Bond Count	10	ChemAxon
Refractivity	107.19 m³·mol⁻¹	ChemAxon
Polarizability	42.68 Å³	ChemAxon
Number of Rings	2	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	Yes	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

C00048856

Chemspider ID

10232653

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

16007093

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

Yalla R, Raghavan S: Synthesis of solandelactone F, constanolactone A and an advanced intermediate towards solandelactone E from a common synthetic intermediate. Org Biomol Chem. 2019 May 8;17(18):4572-4592. doi: 10.1039/c9ob00623k. [PubMed:30997906 ]
Robinson A, Aggarwal VK: Stereocontrolled asymmetric synthesis of syn-E-1,4-diol-2-enes using allyl boronates and its application in the total synthesis of solandelactone F. Org Biomol Chem. 2012 Mar 7;10(9):1795-801. doi: 10.1039/c2ob06975j. Epub 2012 Jan 18. [PubMed:22258739 ]
Robinson A, Aggarwal VK: Asymmetric total synthesis of solandelactone E: stereocontrolled synthesis of the 2-ene-1,4-diol core through a lithiation-borylation-allylation sequence. Angew Chem Int Ed Engl. 2010 Sep 3;49(37):6673-5. doi: 10.1002/anie.201003236. [PubMed:20683835 ]
Davoren JE, Harcken C, Martin SF: Studies toward the enantioselective syntheses of oxylipins: total synthesis and structure revision of solandelactone E. J Org Chem. 2008 Jan 18;73(2):391-402. doi: 10.1021/jo701739v. Epub 2007 Dec 19. [PubMed:18088137 ]
Davoren JE, Martin SF: Enantioselective synthesis and structure revision of solandelactone E. J Am Chem Soc. 2007 Jan 24;129(3):510-1. doi: 10.1021/ja068270q. [PubMed:17227012 ]
LOTUS database [Link]

Showing NP-Card for (5z,8r)-8-[(1r,2r)-2-[(1s,2e,4s,6z)-1,4-dihydroxydodeca-2,6-dien-1-yl]cyclopropyl]-3,4,7,8-tetrahydrooxocin-2-one (NP0190756)

MOL for NP0190756 ((5z,8r)-8-[(1r,2r)-2-[(1s,2e,4s,6z)-1,4-dihydroxydodeca-2,6-dien-1-yl]cyclopropyl]-3,4,7,8-tetrahydrooxocin-2-one)

3D MOL for NP0190756 ((5z,8r)-8-[(1r,2r)-2-[(1s,2e,4s,6z)-1,4-dihydroxydodeca-2,6-dien-1-yl]cyclopropyl]-3,4,7,8-tetrahydrooxocin-2-one)

3D SDF for NP0190756 ((5z,8r)-8-[(1r,2r)-2-[(1s,2e,4s,6z)-1,4-dihydroxydodeca-2,6-dien-1-yl]cyclopropyl]-3,4,7,8-tetrahydrooxocin-2-one)

3D-SDF for NP0190756 ((5z,8r)-8-[(1r,2r)-2-[(1s,2e,4s,6z)-1,4-dihydroxydodeca-2,6-dien-1-yl]cyclopropyl]-3,4,7,8-tetrahydrooxocin-2-one)

PDB for NP0190756 ((5z,8r)-8-[(1r,2r)-2-[(1s,2e,4s,6z)-1,4-dihydroxydodeca-2,6-dien-1-yl]cyclopropyl]-3,4,7,8-tetrahydrooxocin-2-one)

3D PDB for NP0190756 ((5z,8r)-8-[(1r,2r)-2-[(1s,2e,4s,6z)-1,4-dihydroxydodeca-2,6-dien-1-yl]cyclopropyl]-3,4,7,8-tetrahydrooxocin-2-one)

SMILES for NP0190756 ((5z,8r)-8-[(1r,2r)-2-[(1s,2e,4s,6z)-1,4-dihydroxydodeca-2,6-dien-1-yl]cyclopropyl]-3,4,7,8-tetrahydrooxocin-2-one)

INCHI for NP0190756 ((5z,8r)-8-[(1r,2r)-2-[(1s,2e,4s,6z)-1,4-dihydroxydodeca-2,6-dien-1-yl]cyclopropyl]-3,4,7,8-tetrahydrooxocin-2-one)

Structure for NP0190756 ((5z,8r)-8-[(1r,2r)-2-[(1s,2e,4s,6z)-1,4-dihydroxydodeca-2,6-dien-1-yl]cyclopropyl]-3,4,7,8-tetrahydrooxocin-2-one)

3D Structure for NP0190756 ((5z,8r)-8-[(1r,2r)-2-[(1s,2e,4s,6z)-1,4-dihydroxydodeca-2,6-dien-1-yl]cyclopropyl]-3,4,7,8-tetrahydrooxocin-2-one)