NP-MRD: Showing NP-Card for (5s)-5-[(1s,2s,5r,6s,9r,10r,15s)-15-hydroxy-9,10,14,14-tetramethyl-16-oxapentacyclo[13.2.2.0¹,¹³.0²,¹⁰.0⁵,⁹]nonadecan-6-yl]-5-methyloxolan-2-one (NP0189435)

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Record Information

Version

2.0

Created at

2022-09-04 05:54:59 UTC

Updated at

2022-09-04 05:54:59 UTC

NP-MRD ID

NP0189435

Secondary Accession Numbers

None

Natural Product Identification

Common Name

(5s)-5-[(1s,2s,5r,6s,9r,10r,15s)-15-hydroxy-9,10,14,14-tetramethyl-16-oxapentacyclo[13.2.2.0¹,¹³.0²,¹⁰.0⁵,⁹]nonadecan-6-yl]-5-methyloxolan-2-one

Description

Amblyone belongs to the class of organic compounds known as triterpenoids. These are terpene molecules containing six isoprene units. (5s)-5-[(1s,2s,5r,6s,9r,10r,15s)-15-hydroxy-9,10,14,14-tetramethyl-16-oxapentacyclo[13.2.2.0¹,¹³.0²,¹⁰.0⁵,⁹]nonadecan-6-yl]-5-methyloxolan-2-one is found in Cleome amblyocarpa and Salvia aspera. (5s)-5-[(1s,2s,5r,6s,9r,10r,15s)-15-hydroxy-9,10,14,14-tetramethyl-16-oxapentacyclo[13.2.2.0¹,¹³.0²,¹⁰.0⁵,⁹]nonadecan-6-yl]-5-methyloxolan-2-one was first documented in 2008 (PMID: 21264161). Based on a literature review very few articles have been published on Amblyone.

Structure

MOL 3D MOL SDF PDB SMILES InChI


  Mrv1652309042207552D          

 31 36  0  0  1  0            999 V2000
    1.6776    1.2914    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.2398    0.5921    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.6311    1.1490    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.0996    0.2510    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
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 28 30  1  0  0  0  0
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M  END

     RDKit          3D

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M  END


  Mrv1652309042207552D          

 31 36  0  0  1  0            999 V2000
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M  END
> <DATABASE_ID>
NP0189435

> <DATABASE_NAME>
NP-MRD

> <SMILES>
C[C@]1(CCC(=O)O1)[C@H]1CC[C@]2(C)[C@@H]1CC[C@H]1[C@@]2(C)CCC2C(C)(C)[C@]3(O)CC[C@]12CO3

> <INCHI_IDENTIFIER>
InChI=1S/C27H42O4/c1-22(2)19-9-12-24(4)20(26(19)14-15-27(22,29)30-16-26)7-6-17-18(8-11-23(17,24)3)25(5)13-10-21(28)31-25/h17-20,29H,6-16H2,1-5H3/t17-,18+,19?,20+,23-,24-,25+,26-,27+/m1/s1

> <INCHI_KEY>
IYHHZIXQJXKUSA-ZVKAKZBRSA-N

> <FORMULA>
C27H42O4

> <MOLECULAR_WEIGHT>
430.629

> <EXACT_MASS>
430.308309832

> <JCHEM_ACCEPTOR_COUNT>
3

> <JCHEM_ATOM_COUNT>
73

> <JCHEM_AVERAGE_POLARIZABILITY>
49.6503323433717

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
1

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
(5S)-5-[(1S,2S,5R,6S,9R,10R,15S)-15-hydroxy-9,10,14,14-tetramethyl-16-oxapentacyclo[13.2.2.0^{1,13}.0^{2,10}.0^{5,9}]nonadecan-6-yl]-5-methyloxolan-2-one

> <JCHEM_LOGP>
4.876901924666666

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
6

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA_STRONGEST_ACIDIC>
11.685010913937818

> <JCHEM_PKA_STRONGEST_BASIC>
-4.248776226243598

> <JCHEM_POLAR_SURFACE_AREA>
55.760000000000005

> <JCHEM_REFRACTIVITY>
119.05829999999999

> <JCHEM_ROTATABLE_BOND_COUNT>
1

> <JCHEM_RULE_OF_FIVE>
1

> <JCHEM_TRADITIONAL_IUPAC>
(5S)-5-[(1S,2S,5R,6S,9R,10R,15S)-15-hydroxy-9,10,14,14-tetramethyl-16-oxapentacyclo[13.2.2.0^{1,13}.0^{2,10}.0^{5,9}]nonadecan-6-yl]-5-methyloxolan-2-one

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 04-SEP-22   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   04-SEP-22         0                                  
HETATM    1  C   UNK     0       3.131   2.411   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0       2.314   1.105   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0       1.178   2.145   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0       3.919   0.469   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0       5.054   1.585   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0       6.623   1.346   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0       7.087  -0.169   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0       8.164   0.932   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0       5.983  -1.243   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0       6.362  -2.736   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0       7.844  -3.154   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0       8.947  -2.080   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0      10.484  -2.182   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0      11.305  -3.484   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0       9.923  -4.165   0.000  0.00  0.00           C+0
HETATM   16  C   UNK     0      12.515  -2.531   0.000  0.00  0.00           C+0
HETATM   17  C   UNK     0      13.795  -3.388   0.000  0.00  0.00           C+0
HETATM   18  C   UNK     0      13.376  -4.870   0.000  0.00  0.00           C+0
HETATM   19  O   UNK     0      14.329  -6.079   0.000  0.00  0.00           O+0
HETATM   20  O   UNK     0      11.837  -4.929   0.000  0.00  0.00           O+0
HETATM   21  C   UNK     0      11.055  -0.751   0.000  0.00  0.00           C+0
HETATM   22  C   UNK     0       9.871   0.234   0.000  0.00  0.00           C+0
HETATM   23  C   UNK     0       8.569  -0.587   0.000  0.00  0.00           C+0
HETATM   24  C   UNK     0       8.830   0.930   0.000  0.00  0.00           C+0
HETATM   25  C   UNK     0       4.369  -1.200   0.000  0.00  0.00           C+0
HETATM   26  C   UNK     0       2.990  -2.333   0.000  0.00  0.00           C+0
HETATM   27  C   UNK     0       1.424  -1.615   0.000  0.00  0.00           C+0
HETATM   28  C   UNK     0       0.917   0.047   0.000  0.00  0.00           C+0
HETATM   29  O   UNK     0      -0.549   0.521   0.000  0.00  0.00           O+0
HETATM   30  O   UNK     0       2.234  -0.097   0.000  0.00  0.00           O+0
HETATM   31  C   UNK     0       2.954  -1.242   0.000  0.00  0.00           C+0
CONECT    1    2                                                            
CONECT    2    1    3    4   28                                             
CONECT    3    2                                                            
CONECT    4    2    5   25                                                  
CONECT    5    4    6                                                       
CONECT    6    5    7                                                       
CONECT    7    6    8    9   23                                             
CONECT    8    7                                                            
CONECT    9    7   10   25                                                  
CONECT   10    9   11                                                       
CONECT   11   10   12                                                       
CONECT   12   11   13   23                                                  
CONECT   13   12   14   21                                                  
CONECT   14   13   15   16   20                                             
CONECT   15   14                                                            
CONECT   16   14   17                                                       
CONECT   17   16   18                                                       
CONECT   18   17   19   20                                                  
CONECT   19   18                                                            
CONECT   20   18   14                                                       
CONECT   21   13   22                                                       
CONECT   22   21   23                                                       
CONECT   23   22   12    7   24                                             
CONECT   24   23                                                            
CONECT   25    9    4   26   31                                             
CONECT   26   25   27                                                       
CONECT   27   26   28                                                       
CONECT   28   27    2   29   30                                             
CONECT   29   28                                                            
CONECT   30   28   31                                                       
CONECT   31   30   25                                                       
MASTER        0    0    0    0    0    0    0    0   31    0   72    0
END

View in JSmol

Synonyms

Not Available

Chemical Formula

C₂₇H₄₂O₄

Average Mass

430.6290 Da

Monoisotopic Mass

430.30831 Da

IUPAC Name

(5S)-5-[(1S,2S,5R,6S,9R,10R,15S)-15-hydroxy-9,10,14,14-tetramethyl-16-oxapentacyclo[13.2.2.0^{1,13}.0^{2,10}.0^{5,9}]nonadecan-6-yl]-5-methyloxolan-2-one

Traditional Name

(5S)-5-[(1S,2S,5R,6S,9R,10R,15S)-15-hydroxy-9,10,14,14-tetramethyl-16-oxapentacyclo[13.2.2.0^{1,13}.0^{2,10}.0^{5,9}]nonadecan-6-yl]-5-methyloxolan-2-one

CAS Registry Number

Not Available

SMILES

C[C@]1(CCC(=O)O1)[C@H]1CC[C@]2(C)[C@@H]1CC[C@H]1[C@@]2(C)CCC2C(C)(C)[C@]3(O)CC[C@]12CO3

InChI Identifier

InChI=1S/C27H42O4/c1-22(2)19-9-12-24(4)20(26(19)14-15-27(22,29)30-16-26)7-6-17-18(8-11-23(17,24)3)25(5)13-10-21(28)31-25/h17-20,29H,6-16H2,1-5H3/t17-,18+,19?,20+,23-,24-,25+,26-,27+/m1/s1

InChI Key

IYHHZIXQJXKUSA-ZVKAKZBRSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Cleome amblyocarpa	LOTUS Database	35616633
Salvia aspera	LOTUS Database	35616633

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as triterpenoids. These are terpene molecules containing six isoprene units.

Kingdom

Organic compounds

Super Class

Lipids and lipid-like molecules

Class

Prenol lipids

Sub Class

Triterpenoids

Direct Parent

Triterpenoids

Alternative Parents

Substituents

Triterpenoid
Naphthopyran
Naphthalene
Pyran
Oxane
Gamma butyrolactone
Tetrahydrofuran
Cyclic alcohol
Lactone
Hemiacetal
Carboxylic acid ester
Oxacycle
Organoheterocyclic compound
Monocarboxylic acid or derivatives
Carboxylic acid derivative
Organic oxygen compound
Organic oxide
Hydrocarbon derivative
Organooxygen compound
Carbonyl group
Aliphatic heteropolycyclic compound

Molecular Framework

Aliphatic heteropolycyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	4.88	ChemAxon
pKa (Strongest Acidic)	11.69	ChemAxon
pKa (Strongest Basic)	-4.2	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	3	ChemAxon
Hydrogen Donor Count	1	ChemAxon
Polar Surface Area	55.76 Å²	ChemAxon
Rotatable Bond Count	1	ChemAxon
Refractivity	119.06 m³·mol⁻¹	ChemAxon
Polarizability	49.65 Å³	ChemAxon
Number of Rings	6	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	No	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

Not Available

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

101921672

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

Khan A, Rahman M, Islam MS: Antibacterial, antifungal and cytotoxic activities of amblyone isolated from Amorphophallus campanulatus. Indian J Pharmacol. 2008 Jan;40(1):41-4. doi: 10.4103/0253-7613.40489. [PubMed:21264161 ]
LOTUS database [Link]

Showing NP-Card for (5s)-5-[(1s,2s,5r,6s,9r,10r,15s)-15-hydroxy-9,10,14,14-tetramethyl-16-oxapentacyclo[13.2.2.0¹,¹³.0²,¹⁰.0⁵,⁹]nonadecan-6-yl]-5-methyloxolan-2-one (NP0189435)

MOL for NP0189435 ((5s)-5-[(1s,2s,5r,6s,9r,10r,15s)-15-hydroxy-9,10,14,14-tetramethyl-16-oxapentacyclo[13.2.2.0¹,¹³.0²,¹⁰.0⁵,⁹]nonadecan-6-yl]-5-methyloxolan-2-one)

3D MOL for NP0189435 ((5s)-5-[(1s,2s,5r,6s,9r,10r,15s)-15-hydroxy-9,10,14,14-tetramethyl-16-oxapentacyclo[13.2.2.0¹,¹³.0²,¹⁰.0⁵,⁹]nonadecan-6-yl]-5-methyloxolan-2-one)

3D SDF for NP0189435 ((5s)-5-[(1s,2s,5r,6s,9r,10r,15s)-15-hydroxy-9,10,14,14-tetramethyl-16-oxapentacyclo[13.2.2.0¹,¹³.0²,¹⁰.0⁵,⁹]nonadecan-6-yl]-5-methyloxolan-2-one)

3D-SDF for NP0189435 ((5s)-5-[(1s,2s,5r,6s,9r,10r,15s)-15-hydroxy-9,10,14,14-tetramethyl-16-oxapentacyclo[13.2.2.0¹,¹³.0²,¹⁰.0⁵,⁹]nonadecan-6-yl]-5-methyloxolan-2-one)

PDB for NP0189435 ((5s)-5-[(1s,2s,5r,6s,9r,10r,15s)-15-hydroxy-9,10,14,14-tetramethyl-16-oxapentacyclo[13.2.2.0¹,¹³.0²,¹⁰.0⁵,⁹]nonadecan-6-yl]-5-methyloxolan-2-one)

3D PDB for NP0189435 ((5s)-5-[(1s,2s,5r,6s,9r,10r,15s)-15-hydroxy-9,10,14,14-tetramethyl-16-oxapentacyclo[13.2.2.0¹,¹³.0²,¹⁰.0⁵,⁹]nonadecan-6-yl]-5-methyloxolan-2-one)

SMILES for NP0189435 ((5s)-5-[(1s,2s,5r,6s,9r,10r,15s)-15-hydroxy-9,10,14,14-tetramethyl-16-oxapentacyclo[13.2.2.0¹,¹³.0²,¹⁰.0⁵,⁹]nonadecan-6-yl]-5-methyloxolan-2-one)

INCHI for NP0189435 ((5s)-5-[(1s,2s,5r,6s,9r,10r,15s)-15-hydroxy-9,10,14,14-tetramethyl-16-oxapentacyclo[13.2.2.0¹,¹³.0²,¹⁰.0⁵,⁹]nonadecan-6-yl]-5-methyloxolan-2-one)

Structure for NP0189435 ((5s)-5-[(1s,2s,5r,6s,9r,10r,15s)-15-hydroxy-9,10,14,14-tetramethyl-16-oxapentacyclo[13.2.2.0¹,¹³.0²,¹⁰.0⁵,⁹]nonadecan-6-yl]-5-methyloxolan-2-one)

3D Structure for NP0189435 ((5s)-5-[(1s,2s,5r,6s,9r,10r,15s)-15-hydroxy-9,10,14,14-tetramethyl-16-oxapentacyclo[13.2.2.0¹,¹³.0²,¹⁰.0⁵,⁹]nonadecan-6-yl]-5-methyloxolan-2-one)