NP-MRD: Showing NP-Card for (2-{[(2r)-3-{[10-(2-hexylcyclopropyl)decanoyl]oxy}-2-hydroxypropyl phosphonato]oxy}ethyl)trimethylazanium (NP0189388)

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Record Information

Version

2.0

Created at

2022-09-04 05:51:50 UTC

Updated at

2022-09-04 05:51:50 UTC

NP-MRD ID

NP0189388

Secondary Accession Numbers

None

Natural Product Identification

Common Name

(2-{[(2r)-3-{[10-(2-hexylcyclopropyl)decanoyl]oxy}-2-hydroxypropyl phosphonato]oxy}ethyl)trimethylazanium

Description

Pc(18:0(11Cp)/0:0) Belongs to the class of organic compounds known as 1-acyl-sn-glycero-3-phosphocholines. These are glycerophosphocholines in which the glycerol is esterified with a fatty acid at O-1 position, and linked at position 3 to a phosphocholine. Thus, PC(18:0(11Cp)/0:0) Is considered to be a glycerophosphocholine. Based on a literature review very few articles have been published on Pc(18:0(11Cp)/0:0).

Structure

MOL 3D MOL SDF PDB SMILES InChI


  Mrv1652309042207512D          

 36 36  0  0  1  0            999 V2000
   -3.6829   -3.3000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9684   -2.8875    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
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  9 10  1  0  0  0  0
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 11 12  1  0  0  0  0
 12 13  1  0  0  0  0
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 15 16  1  0  0  0  0
 16 17  1  0  0  0  0
 17 18  1  0  0  0  0
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 19 20  2  0  0  0  0
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 23 24  1  1  0  0  0
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 25 26  1  0  0  0  0
 26 27  1  0  0  0  0
 27 28  2  0  0  0  0
 27 29  1  0  0  0  0
 27 30  1  0  0  0  0
 30 31  1  0  0  0  0
 31 32  1  0  0  0  0
 32 33  1  0  0  0  0
 33 34  1  0  0  0  0
 33 35  1  0  0  0  0
 33 36  1  0  0  0  0
M  CHG  2  29  -1  33   1
M  END

     RDKit          3D

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  1  2  1  0
  2  3  1  0
  3  4  1  0
  4  5  1  0
  5  6  1  0
  6  7  1  0
  7  8  1  0
  8  9  1  0
  9 10  1  0
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 11 12  1  0
 12 13  1  0
 13 14  1  0
 14 15  1  0
 15 16  1  0
 16 17  1  0
 17 18  1  0
 18 19  1  0
 19 20  2  0
 19 21  1  0
 21 22  1  0
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 23 25  1  0
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 31 32  1  0
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 33 35  1  0
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  9  7  1  0
  1 37  1  0
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 34 84  1  0
 35 85  1  0
 35 86  1  0
 35 87  1  0
 36 88  1  0
 36 89  1  0
 36 90  1  0
M  CHG  2  29  -1  33   1
M  END


  Mrv1652309042207512D          

 36 36  0  0  1  0            999 V2000
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    8.1612    1.5395    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    8.1612    2.3645    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    8.8756    1.1270    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    9.5901    1.5395    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   10.3046    1.1270    0.0000 P   0  0  0  0  0  0  0  0  0  0  0  0
    9.8921    0.4125    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   10.7171    1.8414    0.0000 O   0  5  0  0  0  0  0  0  0  0  0  0
   11.0190    0.7145    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   11.7335    1.1270    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   12.4480    0.7145    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   13.1624    1.1270    0.0000 N   0  3  0  0  0  0  0  0  0  0  0  0
   13.8769    1.5395    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   13.5749    0.4125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   12.7499    1.8414    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  1  0  0  0  0
  3  4  1  0  0  0  0
  4  5  1  0  0  0  0
  5  6  1  0  0  0  0
  6  7  1  0  0  0  0
  7  8  1  0  0  0  0
  8  9  1  0  0  0  0
  7  9  1  0  0  0  0
  9 10  1  0  0  0  0
 10 11  1  0  0  0  0
 11 12  1  0  0  0  0
 12 13  1  0  0  0  0
 13 14  1  0  0  0  0
 14 15  1  0  0  0  0
 15 16  1  0  0  0  0
 16 17  1  0  0  0  0
 17 18  1  0  0  0  0
 18 19  1  0  0  0  0
 19 20  2  0  0  0  0
 19 21  1  0  0  0  0
 21 22  1  0  0  0  0
 22 23  1  0  0  0  0
 23 24  1  1  0  0  0
 23 25  1  0  0  0  0
 25 26  1  0  0  0  0
 26 27  1  0  0  0  0
 27 28  2  0  0  0  0
 27 29  1  0  0  0  0
 27 30  1  0  0  0  0
 30 31  1  0  0  0  0
 31 32  1  0  0  0  0
 32 33  1  0  0  0  0
 33 34  1  0  0  0  0
 33 35  1  0  0  0  0
 33 36  1  0  0  0  0
M  CHG  2  29  -1  33   1
M  END
> <DATABASE_ID>
NP0189388

> <DATABASE_NAME>
NP-MRD

> <SMILES>
CCCCCCC1CC1CCCCCCCCCC(=O)OC[C@@H](O)COP([O-])(=O)OCC[N+](C)(C)C

> <INCHI_IDENTIFIER>
InChI=1S/C27H54NO7P/c1-5-6-7-13-16-24-21-25(24)17-14-11-9-8-10-12-15-18-27(30)33-22-26(29)23-35-36(31,32)34-20-19-28(2,3)4/h24-26,29H,5-23H2,1-4H3/t24?,25?,26-/m1/s1

> <INCHI_KEY>
JMNXFZCXVGEDAC-NRUKRLKBSA-N

> <FORMULA>
C27H54NO7P

> <MOLECULAR_WEIGHT>
535.703

> <EXACT_MASS>
535.363790081

> <JCHEM_ACCEPTOR_COUNT>
4

> <JCHEM_ATOM_COUNT>
90

> <JCHEM_AVERAGE_POLARIZABILITY>
63.063842098686315

> <JCHEM_BIOAVAILABILITY>
0

> <JCHEM_DONOR_COUNT>
1

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
(2-{[(2R)-3-{[10-(2-hexylcyclopropyl)decanoyl]oxy}-2-hydroxypropyl phosphono]oxy}ethyl)trimethylazanium

> <JCHEM_LOGP>
1.7476234318615889

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
1

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA>
13.655609236411614

> <JCHEM_PKA_STRONGEST_ACIDIC>
1.8553406136270887

> <JCHEM_PKA_STRONGEST_BASIC>
-3.4040033707844772

> <JCHEM_POLAR_SURFACE_AREA>
105.12000000000002

> <JCHEM_REFRACTIVITY>
154.16969999999995

> <JCHEM_ROTATABLE_BOND_COUNT>
25

> <JCHEM_RULE_OF_FIVE>
0

> <JCHEM_TRADITIONAL_IUPAC>
(2-{[(2R)-3-{[10-(2-hexylcyclopropyl)decanoyl]oxy}-2-hydroxypropyl phosphono]oxy}ethyl)trimethylazanium

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 04-SEP-22   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   04-SEP-22         0                                  
HETATM    1  C   UNK     0      -6.875  -6.160   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0      -5.541  -5.390   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0      -5.541  -3.850   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0      -4.207  -3.080   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0      -4.207  -1.540   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0      -2.874  -0.770   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0      -2.874   0.770   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0      -3.644   2.104   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0      -2.104   2.104   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0      -0.770   2.874   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0       0.564   2.104   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0       1.897   2.874   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0       3.231   2.104   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0       4.565   2.874   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0       5.898   2.104   0.000  0.00  0.00           C+0
HETATM   16  C   UNK     0       7.232   2.874   0.000  0.00  0.00           C+0
HETATM   17  C   UNK     0       8.566   2.104   0.000  0.00  0.00           C+0
HETATM   18  C   UNK     0       9.899   2.874   0.000  0.00  0.00           C+0
HETATM   19  C   UNK     0      11.233   2.104   0.000  0.00  0.00           C+0
HETATM   20  O   UNK     0      11.233   0.564   0.000  0.00  0.00           O+0
HETATM   21  O   UNK     0      12.567   2.874   0.000  0.00  0.00           O+0
HETATM   22  C   UNK     0      13.900   2.104   0.000  0.00  0.00           C+0
HETATM   23  C   UNK     0      15.234   2.874   0.000  0.00  0.00           C+0
HETATM   24  O   UNK     0      15.234   4.414   0.000  0.00  0.00           O+0
HETATM   25  C   UNK     0      16.568   2.104   0.000  0.00  0.00           C+0
HETATM   26  O   UNK     0      17.902   2.874   0.000  0.00  0.00           O+0
HETATM   27  P   UNK     0      19.235   2.104   0.000  0.00  0.00           P+0
HETATM   28  O   UNK     0      18.465   0.770   0.000  0.00  0.00           O+0
HETATM   29  O   UNK     0      20.005   3.437   0.000  0.00  0.00           O-1
HETATM   30  O   UNK     0      20.569   1.334   0.000  0.00  0.00           O+0
HETATM   31  C   UNK     0      21.903   2.104   0.000  0.00  0.00           C+0
HETATM   32  C   UNK     0      23.236   1.334   0.000  0.00  0.00           C+0
HETATM   33  N   UNK     0      24.570   2.104   0.000  0.00  0.00           N+1
HETATM   34  C   UNK     0      25.904   2.874   0.000  0.00  0.00           C+0
HETATM   35  C   UNK     0      25.340   0.770   0.000  0.00  0.00           C+0
HETATM   36  C   UNK     0      23.800   3.437   0.000  0.00  0.00           C+0
CONECT    1    2                                                            
CONECT    2    1    3                                                       
CONECT    3    2    4                                                       
CONECT    4    3    5                                                       
CONECT    5    4    6                                                       
CONECT    6    5    7                                                       
CONECT    7    6    8    9                                                  
CONECT    8    7    9                                                       
CONECT    9    8    7   10                                                  
CONECT   10    9   11                                                       
CONECT   11   10   12                                                       
CONECT   12   11   13                                                       
CONECT   13   12   14                                                       
CONECT   14   13   15                                                       
CONECT   15   14   16                                                       
CONECT   16   15   17                                                       
CONECT   17   16   18                                                       
CONECT   18   17   19                                                       
CONECT   19   18   20   21                                                  
CONECT   20   19                                                            
CONECT   21   19   22                                                       
CONECT   22   21   23                                                       
CONECT   23   22   24   25                                                  
CONECT   24   23                                                            
CONECT   25   23   26                                                       
CONECT   26   25   27                                                       
CONECT   27   26   28   29   30                                             
CONECT   28   27                                                            
CONECT   29   27                                                            
CONECT   30   27   31                                                       
CONECT   31   30   32                                                       
CONECT   32   31   33                                                       
CONECT   33   32   34   35   36                                             
CONECT   34   33                                                            
CONECT   35   33                                                            
CONECT   36   33                                                            
MASTER        0    0    0    0    0    0    0    0   36    0   72    0
END

View in JSmol

Synonyms

Not Available

Chemical Formula

C₂₇H₅₄NO₇P

Average Mass

535.7030 Da

Monoisotopic Mass

535.36379 Da

IUPAC Name

(2-{[(2R)-3-{[10-(2-hexylcyclopropyl)decanoyl]oxy}-2-hydroxypropyl phosphono]oxy}ethyl)trimethylazanium

Traditional Name

(2-{[(2R)-3-{[10-(2-hexylcyclopropyl)decanoyl]oxy}-2-hydroxypropyl phosphono]oxy}ethyl)trimethylazanium

CAS Registry Number

Not Available

SMILES

CCCCCCC1CC1CCCCCCCCCC(=O)OC[C@@H](O)COP([O-])(=O)OCC[N+](C)(C)C

InChI Identifier

InChI=1S/C27H54NO7P/c1-5-6-7-13-16-24-21-25(24)17-14-11-9-8-10-12-15-18-27(30)33-22-26(29)23-35-36(31,32)34-20-19-28(2,3)4/h24-26,29H,5-23H2,1-4H3/t24?,25?,26-/m1/s1

InChI Key

JMNXFZCXVGEDAC-NRUKRLKBSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Not Available

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as 1-acyl-sn-glycero-3-phosphocholines. These are glycerophosphocholines in which the glycerol is esterified with a fatty acid at O-1 position, and linked at position 3 to a phosphocholine.

Kingdom

Organic compounds

Super Class

Lipids and lipid-like molecules

Class

Glycerophospholipids

Sub Class

Glycerophosphocholines

Direct Parent

1-acyl-sn-glycero-3-phosphocholines

Alternative Parents

Substituents

1-acyl-sn-glycero-3-phosphocholine
Phosphocholine
Choline
Fatty acid ester
Dialkyl phosphate
Organic phosphoric acid derivative
Fatty acyl
Phosphoric acid ester
Alkyl phosphate
Tetraalkylammonium salt
Quaternary ammonium salt
Carboxylic acid ester
Secondary alcohol
Monocarboxylic acid or derivatives
Carboxylic acid derivative
Organic salt
Organooxygen compound
Organonitrogen compound
Hydrocarbon derivative
Organic oxide
Organic oxygen compound
Organic nitrogen compound
Carbonyl group
Amine
Alcohol
Organic cation
Aliphatic homomonocyclic compound

Molecular Framework

Aliphatic homomonocyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	1.75	ChemAxon
pKa (Strongest Acidic)	1.86	ChemAxon
pKa (Strongest Basic)	-3.4	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	4	ChemAxon
Hydrogen Donor Count	1	ChemAxon
Polar Surface Area	105.12 Å²	ChemAxon
Rotatable Bond Count	25	ChemAxon
Refractivity	154.17 m³·mol⁻¹	ChemAxon
Polarizability	63.06 Å³	ChemAxon
Number of Rings	1	ChemAxon
Bioavailability	No	ChemAxon
Rule of Five	No	ChemAxon
Ghose Filter	No	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

24699123

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

15515616

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

LOTUS database [Link]

Showing NP-Card for (2-{[(2r)-3-{[10-(2-hexylcyclopropyl)decanoyl]oxy}-2-hydroxypropyl phosphonato]oxy}ethyl)trimethylazanium (NP0189388)

MOL for NP0189388 ((2-{[(2r)-3-{[10-(2-hexylcyclopropyl)decanoyl]oxy}-2-hydroxypropyl phosphonato]oxy}ethyl)trimethylazanium)

3D MOL for NP0189388 ((2-{[(2r)-3-{[10-(2-hexylcyclopropyl)decanoyl]oxy}-2-hydroxypropyl phosphonato]oxy}ethyl)trimethylazanium)

3D SDF for NP0189388 ((2-{[(2r)-3-{[10-(2-hexylcyclopropyl)decanoyl]oxy}-2-hydroxypropyl phosphonato]oxy}ethyl)trimethylazanium)

3D-SDF for NP0189388 ((2-{[(2r)-3-{[10-(2-hexylcyclopropyl)decanoyl]oxy}-2-hydroxypropyl phosphonato]oxy}ethyl)trimethylazanium)

PDB for NP0189388 ((2-{[(2r)-3-{[10-(2-hexylcyclopropyl)decanoyl]oxy}-2-hydroxypropyl phosphonato]oxy}ethyl)trimethylazanium)

3D PDB for NP0189388 ((2-{[(2r)-3-{[10-(2-hexylcyclopropyl)decanoyl]oxy}-2-hydroxypropyl phosphonato]oxy}ethyl)trimethylazanium)

SMILES for NP0189388 ((2-{[(2r)-3-{[10-(2-hexylcyclopropyl)decanoyl]oxy}-2-hydroxypropyl phosphonato]oxy}ethyl)trimethylazanium)

INCHI for NP0189388 ((2-{[(2r)-3-{[10-(2-hexylcyclopropyl)decanoyl]oxy}-2-hydroxypropyl phosphonato]oxy}ethyl)trimethylazanium)

Structure for NP0189388 ((2-{[(2r)-3-{[10-(2-hexylcyclopropyl)decanoyl]oxy}-2-hydroxypropyl phosphonato]oxy}ethyl)trimethylazanium)

3D Structure for NP0189388 ((2-{[(2r)-3-{[10-(2-hexylcyclopropyl)decanoyl]oxy}-2-hydroxypropyl phosphonato]oxy}ethyl)trimethylazanium)